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1,492 results for “species delimitation”
Figure 7 from: Singh G, Aptroot A, Rico VJ, Otte J, Divakar PK, Crespo A, Cáceres ME da S, Lumbsch HT, Schmitt I (2018) Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters. MycoKeys 44: 19-50. https://doi.org/10.3897/mycokeys.44.29904
Figure 7 Neoprotoparmeliacapensis, holotype Crespo, Divakar, Hawksworth, Amo & Lumbsch 63f (MAF-Lich. 19584). a Habit b Section through centre of apothecium, showing cupular proper exciple (arrow) c Ascus d Spores, showing setae (arrow). Scale bars: 2 mm (a), 100 µm (b), 10 µm (c), 5 µm (d).
Figure 8 from: Singh G, Aptroot A, Rico VJ, Otte J, Divakar PK, Crespo A, Cáceres ME da S, Lumbsch HT, Schmitt I (2018) Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters. MycoKeys 44: 19-50. https://doi.org/10.3897/mycokeys.44.29904
Figure 8 Neoprotoparmeliacorallifera (type species Neoprotoparmelia), sample Papong 7100. Scale bar: 1 mm.
Figure 12 from: Singh G, Aptroot A, Rico VJ, Otte J, Divakar PK, Crespo A, Cáceres ME da S, Lumbsch HT, Schmitt I (2018) Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters. MycoKeys 44: 19-50. https://doi.org/10.3897/mycokeys.44.29904
Figure 12 Neoprotoparmeliaplurisporibadia, holotype Cáceres & Aproot 22130 (ABL). a Habitus b ascus with ascospores. Scale bars: 1 mm (a), 10 micron (b).
Figure 6 from: Singh G, Aptroot A, Rico VJ, Otte J, Divakar PK, Crespo A, Cáceres ME da S, Lumbsch HT, Schmitt I (2018) Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters. MycoKeys 44: 19-50. https://doi.org/10.3897/mycokeys.44.29904
Figure 6 Neoprotoparmeliabrasilisidiata, holotype Cáceres & Aproot 21684 (ISE). Scale bar: 1 mm.
Figure 3 from: Singh G, Aptroot A, Rico VJ, Otte J, Divakar PK, Crespo A, Cáceres ME da S, Lumbsch HT, Schmitt I (2018) Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters. MycoKeys 44: 19-50. https://doi.org/10.3897/mycokeys.44.29904
Figure 3 Maroninaaustraliensis (type species of Maronina), holotype Hafellner 17823 & Rogers (GZU). Scale bar: 1 mm.
Figure 11 from: Singh G, Aptroot A, Rico VJ, Otte J, Divakar PK, Crespo A, Cáceres ME da S, Lumbsch HT, Schmitt I (2018) Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters. MycoKeys 44: 19-50. https://doi.org/10.3897/mycokeys.44.29904
Figure 11 Neoprotoparmeliapauli, holotype Kirika & Lumbsch 3821 (EA) a Habit b Centre of apothecia section, showing cupular proper exciple (arrow). Scale bars: 1 mm (a), 20 µm (b).
Figure 1 from: Singh G, Aptroot A, Rico VJ, Otte J, Divakar PK, Crespo A, Cáceres ME da S, Lumbsch HT, Schmitt I (2018) Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters. MycoKeys 44: 19-50. https://doi.org/10.3897/mycokeys.44.29904
Figure 1 Phylogeny of Protoparmelioideae based on maximum likelihood analysis of ITS rDNA sequences of Protoparmelia and Neoprotoparmelia (Maronina s.l.). Numbers above branches indicate bootstrap support. Terminal clades were collapsed at the species level for clarity of presentation. The length of the triangle corresponds to branch lengths. Numbers in parentheses indicate number of specimens included in collapsed clade. Voucher information of each specimen in a clade is given in Table 1; New Neoprotoparmelia species are marked in red and bold.
Figure 2 from: Singh G, Aptroot A, Rico VJ, Otte J, Divakar PK, Crespo A, Cáceres ME da S, Lumbsch HT, Schmitt I (2018) Neoprotoparmelia gen. nov. and Maronina (Lecanorales, Protoparmelioideae): species description and generic delimitation using DNA barcodes and phenotypical characters. MycoKeys 44: 19-50. https://doi.org/10.3897/mycokeys.44.29904
Figure 2 Boxplot showing the intra- and interspecific genetic distances of Neoprotoparmelia species and the overall intraspecific distances from all species and pairwise interspecific distances. New species described in this study are marked in red.
FIGURE 1 in Phylogenetic analyses and species delimitation of Aconurella Ribaut (Hemiptera Cicadellidae: Deltocephalinae: Chiasmini) in China based on molecular data
FIGURE 1. Distribution of sampled specimens of Aconurella in China.
Supplementary material 2 from: Zhou LY, Zhan ZH, Zhu XL, Wan X (2022) Multilocus phylogeny and species delimitation suggest synonymies of two Lucanus Scopoli, 1763 (Coleoptera, Lucanidae) species names. ZooKeys 1135: 139-155. https://doi.org/10.3897/zookeys.1135.89257
Morphological comparisons between phylogenetic clades
Supplementary material 3 from: Zhou LY, Zhan ZH, Zhu XL, Wan X (2022) Multilocus phylogeny and species delimitation suggest synonymies of two Lucanus Scopoli, 1763 (Coleoptera, Lucanidae) species names. ZooKeys 1135: 139-155. https://doi.org/10.3897/zookeys.1135.89257
The mean genetic distance among populations in each collection area (K2P-distances)
Supplementary material 1 from: Zhou LY, Zhan ZH, Zhu XL, Wan X (2022) Multilocus phylogeny and species delimitation suggest synonymies of two Lucanus Scopoli, 1763 (Coleoptera, Lucanidae) species names. ZooKeys 1135: 139-155. https://doi.org/10.3897/zookeys.1135.89257
A list of specimens' voucher information and GenBank accession numbers used in this study
Supplementary material 4 from: Souza CS, Mattox GMT, Vita G, Ochoa LE, Melo BF, Oliveira C (2023) Molecular species delimitation and description of a new species of Phenacogaster (Teleostei, Characidae) from the southern Amazon basin. ZooKeys 1164: 1-21. https://doi.org/10.3897/zookeys.1164.102436
List of the specimens included in the species delimitation analyses
Supplementary material 3 from: Souza CS, Mattox GMT, Vita G, Ochoa LE, Melo BF, Oliveira C (2023) Molecular species delimitation and description of a new species of Phenacogaster (Teleostei, Characidae) from the southern Amazon basin. ZooKeys 1164: 1-21. https://doi.org/10.3897/zookeys.1164.102436
Poisson Tree Processes (PTP) delimitation of species of Phenacogaster
Supplementary material 1 from: Souza CS, Mattox GMT, Vita G, Ochoa LE, Melo BF, Oliveira C (2023) Molecular species delimitation and description of a new species of Phenacogaster (Teleostei, Characidae) from the southern Amazon basin. ZooKeys 1164: 1-21. https://doi.org/10.3897/zookeys.1164.102436
NJ tree of species of Phenacogaster
Supplementary material 5 from: Monjaraz-Ruedas R, Mendez RW, Hedin M (2023) Species delimitation, biogeography, and natural history of dwarf funnel web spiders (Mygalomorphae, Hexurellidae, Hexurella) from the United States / Mexico borderlands. ZooKeys 1167: 109-157. https://doi.org/10.3897/zookeys.1167.103463
Ingroup-only mitochondrial ML gene tree. Specimen numbers correspond to those in Suppl. material 1.
Supplementary material 1 from: Monjaraz-Ruedas R, Mendez RW, Hedin M (2023) Species delimitation, biogeography, and natural history of dwarf funnel web spiders (Mygalomorphae, Hexurellidae, Hexurella) from the United States / Mexico borderlands. ZooKeys 1167: 109-157. https://doi.org/10.3897/zookeys.1167.103463
Molecular and morphological voucher information
Supplementary material 3 from: Monjaraz-Ruedas R, Mendez RW, Hedin M (2023) Species delimitation, biogeography, and natural history of dwarf funnel web spiders (Mygalomorphae, Hexurellidae, Hexurella) from the United States / Mexico borderlands. ZooKeys 1167: 109-157. https://doi.org/10.3897/zookeys.1167.103463
Input matrices, analysis log files, and output tree files for nuclear and mitochondrial analyses
Supplementary material 2 from: Monjaraz-Ruedas R, Mendez RW, Hedin M (2023) Species delimitation, biogeography, and natural history of dwarf funnel web spiders (Mygalomorphae, Hexurellidae, Hexurella) from the United States / Mexico borderlands. ZooKeys 1167: 109-157. https://doi.org/10.3897/zookeys.1167.103463
Custom scripts for bioinformatic analyses
Supplementary material 1 from: Wang Y, Wang Z-Q, Thanarut C, Dao V-M, Wang Y-B, Yu H (2023) Phylogeny and species delimitations in the economically, medically, and ecologically important genus Samsoniella (Cordycipitaceae, Hypocreales). MycoKeys 99: 227-250. https://doi.org/10.3897/mycokeys.99.106474
Specimen information and GenBank accession numbers
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.