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150
datasets available to search
ShareScore release 0.9.0
Dataset results
150 results for “5hmC”
Genome-wide 5mC and 5hmC patterns determine unique transcriptional signatures,regulators and exon inclusion of neural cell types in mouse brain
GEO Series GSE244256. Mus musculus. 24 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Brain methylome remodeling sustains neuronal activity gene expression in mice exposed to maternal immune activation [5hmc]
GEO Series GSE240415. Mus musculus. 16 samples. Type: Methylation profiling by high throughput sequencing.
Stable 5-Hydroxymethylcytosine (5hmC) Acquisition Marks Gene Activation During Chondrogenic Differentiation [array]
GEO Series GSE64141. Mus musculus. 4 samples. Type: Expression profiling by array.
Nitric oxide inhibits Ten-eleven translocation DNA demethylase activity to regulate 5mC and 5hmC across the genome
GEO Series GSE248151. Homo sapiens. 28 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Nitric oxide inhibits Ten-eleven translocation DNA demethylase activity to regulate 5mC and 5hmC across the genome [oxRRBS]
GEO Series GSE248149. Homo sapiens. 16 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide 5-hydroxymethylcytosine (5hmC) emerges at early stage of in vitro hepatocyte differentiation [Expression]
GEO Series GSE130848. Homo sapiens. 4 samples. Type: Expression profiling by array.
5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (Bisulfite-Seq)
GEO Series GSE97991. Homo sapiens. 4 samples. Type: Methylation profiling by high throughput sequencing.
A study of alterations in DNA epigenetic modifications (5mC and 5hmC) influenced by simulated microgravity in human lymphoblastoid cells
Here in this study we systematically examined the patterns of DNA methylation and hydroxy-methylation with its functional implications in gene regulation for the cultured TK6 lymphoblastoid cells upon exposure to micro-gravity conditions. The results reported here indicate that simulated microgravity alters methylation patterns in a limited way and subsequently the expression of genes involved in stress response like ATF3 FBXO17 MAP3K13 and VCL in TK6 cells. Overall design: Examination of RNA-seq with 2 replicates each for 1 cell type
DNA methylation (5mC) and DNA 5-hydroxy methylation (5hmC) analysis in WT murine ES cells
GEO Series GSE51473. Mus musculus. 3 samples. Type: Methylation profiling by genome tiling array.
DIP-seq analysis of 5mC and 5hmC distributions in hESCs and day 12 neural cells
GEO Series GSE68330. Homo sapiens. 6 samples. Type: Methylation profiling by high throughput sequencing.
Discovery of circulating cell-free DNA 5hmC biomarkers for peritoneal metastasis in colorectal and appendiceal cancer
GEO Series GSE290667. Homo sapiens. 185 samples. Type: Other.
Genome-wide maps of 5hmC state in pluripotent and (T-)iPS induction cells.
GEO Series GSE33781. Mus musculus. 5 samples. Type: Methylation profiling by high throughput sequencing.
Role of TET1 Mediatd 5hmC in Osteoarthritis [RRHP]
GEO Series GSE143575. Mus musculus. 13 samples. Type: Methylation profiling by high throughput sequencing.
Sequencing analysis for 5hmC pull-down DNA
GEO Series GSE87165. Mus musculus. 12 samples. Type: Methylation profiling by high throughput sequencing.
Role of TET1 Mediated 5hmC in Osteoarthritis [RNA-seq]
GEO Series GSE143447. Mus musculus. 23 samples. Type: Expression profiling by high throughput sequencing.
Jump-seq: Capture and amplify 5hmC Sites Whole Genome-Wide
GEO Series GSE127906. Mus musculus. 39 samples. Type: Methylation profiling by high throughput sequencing.
Regualtion of 5hMC during Twist-indced EMT
GEO Series GSE227135. Homo sapiens. 3 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Epigenetic safeguards are coordinately removed to reverse cell identity [5hmC Enrichment]
GEO Series GSE119076. Mus musculus. 19 samples. Type: Methylation profiling by high throughput sequencing.
Opioid receptor signaling suppresses leukemia by inducing TET-dependent DNA demethylation [5hmC-seq]
GEO Series GSE147509. Homo sapiens. 4 samples. Type: Methylation profiling by high throughput sequencing.
RNA-seq and 5hmC-seq in acute myeloid leukemia (AML) cells with and without knockdown of Tet1
GEO Series GSE116551. Mus musculus; Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.