Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
29,145
datasets available to search
ShareScore release 0.7.1
Dataset results
29,145 results for “Association”
PIE LTER measurements of water column depth at 15 minute intervals in the Parker River near Rt 1A bridge, Newbury, MA, year 2001. Water depths are relative to the sonde pressure transducer and not associated with a datum.
PIE LTER, year 2001,15 minute readings of water column depth in the lower Parker River Estuary at Fernalds Marina bulkhead off Rt. 1A., Newbury, MA. Water depths are relative to the sonde pressure transducer and not associated with a datum.
PIE LTER measurements of water column depth at 15 minute intervals in the Parker River near Rt 1A bridge, Newbury, MA, year 2002. Water depths are relative to the sonde pressure transducer and not associated with a datum.
PIE LTER, year 2002, 15 minute readings of water column depth in the lower Parker River Estuary at Fernalds Marina bulkhead off Rt. 1A., Newbury, MA. Water depths are relative to the sonde pressure transducer and not associated with a datum.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Atascadero Creek, Puente St (AT07)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Atascadero Creek, Puente St in the Santa Barbara coastal area (site ID: AT07). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Carpinteria Creek, 8th St Foot Bridge (CP00)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Carpinteria Creek, 8th St Foot Bridge in the Santa Barbara coastal area (site ID: CP00). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Devereaux Creek at Slough inflow (DV01)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Devereaux Creek at Slough inflow in the Santa Barbara coastal area (site ID: DV01). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Franklin Creek, Carpinteria Ave (FK00)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Franklin Creek, Carpinteria Ave in the Santa Barbara coastal area (site ID: FK00). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at San Onofre Creek at Highway 101 (ON02)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at San Onofre Creek at Highway 101 in the Santa Barbara coastal area (site ID: ON02). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Rincon Creek, Hwy 101 Culvert, North (RN01)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Rincon Creek, Hwy 101 Culvert, North in the Santa Barbara coastal area (site ID: RN01). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Santa Monica Creek, Via Real (SM01)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Santa Monica Creek, Via Real in the Santa Barbara coastal area (site ID: SM01). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Santa Monica at Scoop (SM04)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Santa Monica at Scoop in the Santa Barbara coastal area (site ID: SM04). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Tecolotito Creek, Hollister Road (TE03)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Tecolotito Creek, Hollister Road in the Santa Barbara coastal area (site ID: TE03). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at Mission Creek at Rocky Nook, USGS 11119745 (MC06)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at Mission Creek at Rocky Nook, USGS 11119745 in the Santa Barbara coastal area (site ID: MC06). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
SBC LTER: Land: Hydrology: Stream discharge and associated parameters at San Pedro Creek at Stow Canyon Park, , USGS 11120520 (SP02)
Stream Discharge and water temperature were collected with a Solinst Model 3001 LT Levelogger at San Pedro Creek at Stow Canyon Park, , USGS 11120520 in the Santa Barbara coastal area (site ID: SP02). Data are reported hourly. Stage values were converted to discharge using a rating curve developed with stream channel cross-sections, roughness estimates and the HEC-RAS model.
Root-associated fungal communities exposed to experimental drought
Plant-associated fungi can ameliorate abiotic stress in their hosts, and changes in these fungal communities can alter plant productivity, species interactions, community structure and ecosystem processes. We investigated the response of root-associated fungi to experimental drought (66% reduction in growing season precipitation) across six North American grassland ecosystem types to determine how extreme drought alters root-associated fungi, and understand what abiotic factors influence root fungal community composition across grassland ecosystems. Next generation sequencing of the fungal ITS2 region demonstrated that drought primarily re-ordered fungal species’ relative abundances within host plant species, with different fungal responses depending on host identity. Grass species that declined more under drought trended toward less community re-ordering of root fungi than species less sensitive to drought. Host identity and grassland ecosystem type defined the magnitude of drought effects on community composition, diversity, and root colonization, and the most important factor affecting fungal composition was plant species identity.
Periwinkle snail association with cordgrass on the York River
This dataset includes tables used in a study of periwinkle snail (Littoraria irrorata) association with big cordgrass (Spartina cynosuroides) and smooth cordgrass (Spartina alterniflora) in a salt marsh along the York River. The overarching goal of this study was to assess if and how plant palatability, predation pressure, and environmental characteristics of each Spartina species influenced the densities and grazing of periwinkle snails. The data were collected in support of a study authored by Failon, Wittyngham, and Johnson in 2020 titled Ecological Associations of Littoraria irrorata with Spartina cynosuroides and Spartina alterniflora. It was published in the journal Wetlands. Data Table 1: Benthic Chlorophyll Data Table 2: Carbon and Nitrogen Data Table 3: Grazing Scars Data Table 4: Light and Temperature Data Table 5: Penetrometer Data Table 6: Plant Heights Data Table 7: Plant Stem Densities and Invertebrate Survey Data Table 8: Predation Assays Data Table 9: Snail Measurements Data Table 10: Total Phenolic Concentrations Data Table 11: Total Soluble Protein Object for Data Table 8: Failon_Predation_field_notes.pdf
Record of storm events and associated water levels for the Virginia Coast Reserve, 1980-2013
This empirical storm record for the Virginia Coast Reserve was created using a 34-year record of hourly wave hindcast data - including wave height (Hs) and wave period (Tp) - from the USACE's Wave Information Studies buoy offshore Hog Island in the Virginia Coast Reserve (Station 63183, 22 m water depth) and hourly records of water level from the nearest NOAA tide gauge (Station 8631044, Wachapreague, VA). The record includes wave and water level statistics for each event relevant for coastal modeling applications: storm start and end times, duration, total water level, still water level, as well as concurrent tidal amplitude, non-tidal residual, Hs, and Tp. The raw data is processed by first removing the 1 yr running median, which accounts for non-stationarity in wave and water level parameters due to inter-annual and decadal variability while maintaining seasonality. The median of the last 3 years is then applied to the entire time series such that the new time series is representative of the current climate. A year-by-year tidal analysis is performed to obtain the tidal amplitude and non-tidal residual. Lastly, water elevations are calculated following the run-up equations of Stockdon et al. (2006). Storm events are then extracted from the corrected time series by conditioning on Hs: events are identified as periods of 8 or more consecutive hours with deep-water significant wave heights greater than 2.1 m, which is the minimum monthly averaged wave height for periods in which waters levels exceeded the measured average dune toe elevation (1.9 m NAVD88) of barriers in the Virginia Coast Reserve. In total, we identify 282 independent sea-storm events over the 34-year record, resulting in an average of 8.3 events per year. See Reeves et al. (2021; https://doi.org/10.1029/2021GL092958) and supplementary information therein for complete details of the methodology.
Associative Prediction of Visual Shape in the Hippocampus
Open the record for dataset details and reuse information.
Conditional Visual Associative Learning Task
Open the record for dataset details and reuse information.
Data for "Gut microbial genes are associated with neurocognition and brain development in healthy children"
<p><strong>Datasets accompanying<em> Gut microbial genes are associated with neurocognition and brain development in healthy children</em>, submitted to Nature Microbiology.</strong></p> <p><strong>Contents:</strong></p> <ul> <li> fecal_samples_master.csv <ul> <li>Metadata for all fecal samples processed by the Klepac-Ceraj Lab at Wellesley College</li> </ul> </li> <li>filemakerdb.csv <ul> <li>Initial export and parsing (long form) of deidentified patient metadata from internal filemnaker pro database</li> </ul> </li> <li>gbm.txt <ul> <li>Info about potentially neuroactive gene sets</li> <li>This was acquired as Supplementary Dataset 1 from <a href="https://doi.org/10.1038/s41564-018-0337-x">https://doi.org/10.1038/s41564-018-0337-x</a></li> </ul> </li> <li>batchXXX_analysis_noknead.tar.gz <ul> <li>Sequencing batches 001-012 (see fecal_samples_master.csv for metadata about samples contained in each batch)</li> <li>Each tarball contains: <ul> <li><strong>cluster.yaml</strong>: configuration file for snakemake pipeline (<a href="https://github.com/Klepac-Ceraj-Lab/snakemake_workflows">repo link</a>)</li> <li><strong>config.yaml</strong>: run configuration for snakemake pipeline</li> <li><strong>.snakemake/</strong>: metadata about snakemake pipeline runs on engaging cluster at MIT</li> <li><strong>output/</strong>: outputs from metaphlan2 and humann2 analysis runs. Note: kneaddata sequence files were not included, but will be uploaded to SRA (link to come)</li> </ul> </li> </ul> </li> <li>All <a href="https://www.uniprot.org/">uniprot</a> searches were performed 2019-09-19 <ul> <li>uniprot-abxr.tsv <ul> <li>search term: "keyword:\"Antibiotic resistance [KW-0046]\" AND reviewed:yes"</li> </ul> </li> <li>uniprot-carbohydrate.tsv <ul> <li>search term: "keyword:\"Carbohydrate metabolism [KW-0119]\" AND reviewed:yes"</li> </ul> </li> <li>uniprot-fa.tsv <ul> <li>search term: (keyword:\"Fatty acid biosynthesis [KW-0275]\" OR keyword:\"Fatty acid metabolism [KW-0276]\") AND reviewed:yes"</li> </ul> </li> </ul> </li> </ul>
Genome-wide association summary statistics of chronic musculoskeletal pain at four anatomic sites and their genetically independent components
<p>The dataset contains results of a genome-wide association study of distinct chronic musculoskeletal pain conditions: back pain, knee pain, neck pain, and hip pain. Additionally, there are genome-wide association summary statistics for four genetically independent components of pain conditions, listed above. For more details, please, read the paper XXX.</p> <p>All files contain association summary statistics for genome-wide association meta-analysis of the 265,000 white British individuals from the UK Biobank and additional 191,580 individuals of European Ancestry from the UK biobank (total N = 456,580). Cases and controls were defined based on questionnaire responses. First, participants responded to “Pain type(s) experienced in the last months” followed by questions inquiring if the specific pain had been present for more than 3 months. Those who reported back, neck or shoulder, hip, or knee pain lasting more than 3 months were considered chronic back, neck/shoulder, hip, and knee pain cases, respectively. Participants reporting no such pain lasting longer than 3 months were considered controls (regardless of whether they had another regional chronic pain, such as abdominal pain, or not). Individuals who preferred not to answer were excluded from the study. Besides this, we excluded individuals who reported more than 3 months of pain all over the body.</p> <p>The data are provided on an "AS-IS" basis, without warranty of any type, expressed or implied, including but not limited to any warranty as to their performance, merchantability, or fitness for any particular purpose. If investigators use these data, any and all consequences are entirely their responsibility. By downloading and using these data, you agree that you will cite the appropriate publication in any communications or publications arising directly or indirectly from these data; for utilization of data available prior to publication, you agree to respect the requested responsibilities of resource users under 2003 Fort Lauderdale principles; you agree that you will never attempt to identify any participant. This research has been conducted using the UK Biobank Resource and the use of the data is guided by the principles formulated by the UK Biobank.</p> <p><strong>When using downloaded data, please cite the corresponding paper and this repository:</strong></p> <ol> <li>Tsepilov et al 2020</li> </ol> <p><strong>Funding:</strong></p> <p>The work of YSA and SZS was supported by the Russian Ministry of Education and Science under the 5-100 Excellence Programme and by the Federal Agency of Scientific Organizations via the Institute of Cytology and Genetics (project 0324-2019-0040). The work of YAT, ASSh, and EEE was supported by the Russian Foundation for Basic Research (project 19-015-00151). The contribution of LСK was funded by PolyOmica. Dr. Suri was supported by VA Career Development Award # 1IK2RX001515 from the United States (U.S.) Department of Veterans Affairs Rehabilitation Research and Development (RR&D) Service. Dr. Suri is a Staff Physician at the VA Puget Sound Health Care System. The contents of this work do not represent the views of the U.S. Department of Veterans Affairs or the United States Government.</p> <p><strong>List of files:</strong></p> <ol> <li>Back_output_done.csv: GWAS summary statistics for the chronic back pain</li> <li>gpc1_output_done.csv: GWAS summary statistics for the GIP1</li> <li>gpc2_output_done.csv: GWAS summary statistics for the GIP2</li> <li>gpc3_output_done.csv: GWAS summary statistics for the GIP3</li> <li>gpc4_output_done.csv: GWAS summary statistics for the GIP4</li> <li>Hip_output_done.csv: GWAS summary statistics for the chronic hip pain</li> <li>Knee_output_done.csv: GWAS summary statistics for the chronic knee pain</li> <li>Neck_output_done.csv: GWAS summary statistics for the chronic neck pain</li> </ol> <p><strong>Column headers:</strong></p> <ol> <li>gwas_id: uninformative field</li> <li>rs_id: dbSNP rsID (GRCh37 build) </li> <li>snp_num: uninformative field</li> <li>chr: chromosome (GRCh37 build) </li> <li>bp: position (GRCh37 build) </li> <li>ea: effect allele (coded as "1")</li> <li>ra: reference allele (coded as "0")</li> <li>eaf: effect allele frequency</li> <li>af_ref: uninformative field</li> <li>beta: effect size of effect allele</li> <li>se: standard error of effect size</li> <li>p: P-value of association (without GC correction)</li> <li>n:Total sample size</li> <li>z: Z-statistic of association</li> <li>info: uninformative field</li> <li>af_outlier: uninformative field</li> <li>pz_outlier: uninformative field</li> </ol>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.