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521 results for “DNA sequence data”
FIGURES 6–13. Servaea incana. 6–9 in Revision of Australian jumping spider genus Servaea Simon 1887 (Aranaea: Salticidae) including use of DNA sequence data and predicted distributions
FIGURES 6–13. Servaea incana. 6–9 dorsal view (6 'light' female and 7 'dark' female; 8 'light' male and 9 'dark' male); 10– 14 female genitalia (10 dorsal view of cleared holotype of S. incana, 11 ventral view of external characteristics of holotype of S. incana; 12 dorsal view of cleared lectotype of S. vestita, 13 ventral view of external characteristics of lectotype of S. vestita). Scale: total body 1 mm; remainder 0.2 mm.
FIGURE 3 in Revision of Australian jumping spider genus Servaea Simon 1887 (Aranaea: Salticidae) including use of DNA sequence data and predicted distributions
FIGURE 3 General anatomy of the female reproductive tract showing the two patterns observed. A. Servaea incana, S. vestita, S. villosa and S. zabkai. B. S. melaina, S. narraweena and S. spinibarbis.
FIGURE 4 in Revision of Australian jumping spider genus Servaea Simon 1887 (Aranaea: Salticidae) including use of DNA sequence data and predicted distributions
FIGURE 4. Spinning biplot for the males of S. spinibarbis (X), S. narraweena (Z) and S. melaina (Y) based on eight morphological characters showing the second and fourth dimensions.
FIGURES 31–38. Servaea narraweena n in Revision of Australian jumping spider genus Servaea Simon 1887 (Aranaea: Salticidae) including use of DNA sequence data and predicted distributions
FIGURES 31–38. Servaea narraweena n. sp. 31–32 dorsal view (31 female, 32 male); 33–34 female genitalia (33 dorsal view of cleared specimen, 34 ventral view of external characteristics); 35–37 male palp (35 ventral view, 36 anterior lateral view, 37 posterior lateral view); 38 known and predicted distribution. Scale: total body 1 mm; remainder 0.2 mm.
FIGURE 2 in Revision of Australian jumping spider genus Servaea Simon 1887 (Aranaea: Salticidae) including use of DNA sequence data and predicted distributions
FIGURE 2. Observed and BIOCLIM predicted distributions of the genus Servaea based on all available specimens.
FIGURE 1 in Revision of Australian jumping spider genus Servaea Simon 1887 (Aranaea: Salticidae) including use of DNA sequence data and predicted distributions
FIGURE 1. Examples of intraspecific variation in abdomen patterning. A–D four specimens of S. villosa collected at the same location and showing similar COI sequences (Fig. 5); E–F dark and light forms of S. incana.
FIGURES 55–58. Servaea zabkai n in Revision of Australian jumping spider genus Servaea Simon 1887 (Aranaea: Salticidae) including use of DNA sequence data and predicted distributions
FIGURES 55–58. Servaea zabkai n. sp. 55 dorsal view (female); 55–57 female genitalia (56 dorsal view of cleared specimen, 57 ventral view of external characteristics); 58 known distribution. Scale: total body 1 mm; remainder 0.2 mm.
FIGURE 1 in A revised classification of the Icteridae (Aves) based on DNA sequence data
FIGURE 1. Phylogeny of the New World blackbirds (Icteridae) inferred from mitochondrial and nuclear DNA sequences of 118 taxa (outgroups not shown)—topology taken from the best tree found under maximum likelihood by Powell et al. (2014; fig. 4); branch lengths estimated in BEAST 1.7.4 (lognormal uncorrelated relaxed clock model for mtDNA, strict clock for nDNA; Drummond et al. 2012) using the same data and mitochondrial partitioning as Powell et al. (2014), but nuclear sequences partitioned by locus. Dashed line marks the threshold used to assign subfamily ranks. Species are listed in the order given by this tree topology and (starting from the deepest node) following the conventions of listing the taxon in the leastdiverse clade first, or for equally diverse clades, the northwestern-most lineage first. However, the ordering of Cacicus haemorrhous, C. oseryi, and C. latirostris was altered to list the two oropendola-like caciques together and last among Cacicus, a sequence that is consistent with the better-supported resolution of relationships among these three taxa inferred from a larger mitochondrial dataset (unpublished).
FIGURE 10 in Taxonomy of the African army ant Dorylus gribodoi Emery, 1892 (Hymenoptera, Formicidae) — new insights from DNA sequence data and morphology
FIGURE 10. Dorsal view of the petiole of a large D. emeryi worker (HW 3.74 mm) from Taï, Ivory Coast.
FIGURE 9 in Taxonomy of the African army ant Dorylus gribodoi Emery, 1892 (Hymenoptera, Formicidae) — new insights from DNA sequence data and morphology
FIGURE 9. Dorsal view of the petiole of a large D. gribodoi worker (HW 2.85 mm) from Taï, Ivory Coast.
scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution - Supplementary data and code
<p>Data and code to reproduce the analyses from the study: "scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution". </p>
FIGURE 2. Phylogenetic results. A, Maximum likelihood tree from COI dataset rooted with Ophelia limacina. B, Maximum likelihood tree from ITS1 in Validation of three sympatric Thoracophelia species (Annelida: Opheliidae) from Dillon Beach, California using mitochondrial and nuclear DNA sequence data
FIGURE 2. Phylogenetic results. A, Maximum likelihood tree from COI dataset rooted with Ophelia limacina. B, Maximum likelihood tree from ITS1 dataset rooted according to the result for the COI dataset. Support values are shown as jackknife from parsimony analysis and bootstrap from maximum likelihood respectively separated by /. * indicates 100% values for each support measure.
FIGURE 1. The three sympatric Thoracophelia spp. from Dillon Beach. A, Thoracophelia dillonensis. B in Validation of three sympatric Thoracophelia species (Annelida: Opheliidae) from Dillon Beach, California using mitochondrial and nuclear DNA sequence data
FIGURE 1. The three sympatric Thoracophelia spp. from Dillon Beach. A, Thoracophelia dillonensis. B, Pectinate branchiae of T. dillonensis. C, Thoracophelia williamsi. D, Bifurcated branchiae with pinnules of T. williamsi. E, Thoracophelia mucronata. F, Bifurcated branchiae of T. mucronata. Scale bars all 1 mm.
Data from: Estimating bloodstain age in the short term based on DNA fragment length using nanopore sequencer
<p>We used a nanopore sequencer to quantify DNA fragments > 10,000 bp in size and then evaluated their relationship with short-term bloodstain age. Moreover, DNA degradation was investigated after bloodstains were wetted once with water. Bloodstain samples on cotton gauze were stored at room temperature and low humidity for up to 6 months. Bloodstains stored for 1 day were wetted with nuclease-free water, allowed to dry, and stored at room temperature and low humidity for up to 1 week. The proportion of fragments > 20,000 bp in dry bloodstains tended to decrease over time, particularly for fragments > 50,000 bp in size. This trend was modeled using a power approximation curve, with the highest R2 value (0.6475) noted for fragments > 50,000 bp in size; lower values were recorded for shorter fragments. The proportion of longer fragments was significantly reduced in bloodstains that were dried after being wetted once, and there was significant difference in fragments > 50,000 bp between dry conditions and once-wetted. This result suggests that even temporary exposure to water causes significant DNA fragmentation, but not extensive degradation. Thus, bloodstains that appear fresh but have a low proportion of long DNA fragments may have been wetted previously. Our results indicate that evaluating the proportion of long DNA fragments yields information on both bloodstain age and the environment in which they were stored.</p>
FIGURE 3 in Two new species of Hypoxylon (Hypoxylaceae) from China based on morphological and DNA sequence data analyses
FIGURE 3. Hypoxylon jianfengense (Holotype FACATAS 845). A. Stromata on wood. B. Stromatal surface and ostioles. C, D. Stroma in vertical section showing the perithecia and tissue below the perithecial layer. E. KOH-extractable pigments. F. Stromatal granules in water. G. Mature and immature asci in water. H. Asci in Melzer's reagent. I. Immature asci in water. J, K. Mature asci in water. L. Apical apparatus in Melzer' s reagent. M. Ascospore in water showing germ slit. N. Ascospores in water. O. Ascospores in 10% KOH. P. Ascospore under SEM. Bars: A = 5 mm; B = 0.3 mm; C = 0.5 mm; D = 0.1 mm; G, I–K = 20 µm; H, L–O = 10 µm; P = 2.5 µm.
FIGURE 1 in Two new species of Hypoxylon (Hypoxylaceae) from China based on morphological and DNA sequence data analyses
FIGURE 1. Phylogenetic tree of Hypoxylon based on the multigene alignment of ITS-LSU-RPB2-TUB2 in the Maximum Likelihood analyses (RaxML). Support values of Maximum Likelihood (ML), Maximum Parsimony (MP) and Bayesian (B) analyses (bootstrap support above 50%, posterior probability value above 0.95) are displayed above or below the respective branches (ML/MP/BA).
FIGURE 2 in Two new species of Hypoxylon (Hypoxylaceae) from China based on morphological and DNA sequence data analyses
FIGURE 2. Hypoxylon larissae (Holotype FACATAS 844). A. Stromata on wood. B, C. Stromatal surface and ostioles. D, E. Stroma in vertical section showing the perithecia and tissue below the perithecial layer. F. KOH-extractable pigments. G. Stromatal granules in water. H. Mature and immature asci in Melzer's reagent. I. Asci in Melzer's reagent. J. Immature asci in water. K. Mature asci in water. L. Ascospores in water. M. Ascospores in 10% KOH. N. Ascospores in water showing germ slit. O. Apical apparatus in Melzer's reagent. P. Ascospore under SEM. Bars: A = 5 mm;B, C, E = 0.4 mm; D = 1 mm; H–K = 20 µm; L–O = 10 µm; P = 5 µm.
Raw data of sequencing results of our study: Bovine milk microbiota: Evaluation of different DNA extraction protocols in challenging samples
<p>Clean reads of the repeated milk samples with used Primer Pairs V1V2 and V3V4</p> <p>Raw data of sequencing results (amplicon single variants)</p>
Data for for Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing
<p>Datasets accompanying the paper https://doi.org/10.1101/2021.10.18.464684</p>
FIGURE 22 in Taxonomy of European Damaeidae (Acari, Oribatida) XI. European species of the genus Piribelba Miko 2021: redescriptions of P. rossica (Bulanova-Zachvatkina 1957) and P. piriformis (Mihelčič, 1964) using morphology and DNA sequence data
FIGURE 22. Piribelba piriformis (Mihelčič, 1964), paralectotypes (originally syntypes of author). A—solenidion φ1; B— setation of genu III (GeIII), genu and tibia IV (GeIII, TiIV); C—aggenital seta and genital setae, lateral view; D—details of selected setae (all in same scale); E—details of leg setation of another specimen, genu III and IV (GeIII, GeIV), tibia and proximal part of tarsus I (TiI, TsI); F—deutonymph in lateral view (dashed area represents crack in medium where observation is more difficult). Scale bar 100 μm.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.