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Dataset results
150 results for “Evolutionary modelling”
Data from: Adding ecological and evolutionary processes to restoration biodiversity offset models using neutral theory
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Data from: Evolutionary history inferred from the de novo assembly of a non-model organism, the blue-eyed black lemur
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Data from: Modelling the two-locus architecture of divergent pollinator adaptation: how variation in SAD paralogues affects fitness and evolutionary divergence in sexually deceptive orchids
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Data from: A test of genetic models for the evolutionary maintenance of same-sex sexual behaviour
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Fossil-informed models reveal a Boreotropical origin and divergent evolutionary trajectories in the walnut family (Juglandaceae)
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Data from: Mechanistic model of evolutionary rate variation en route to a nonphotosynthetic lifestyle in plants
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Data from: Selection, genome-wide fitness effects and evolutionary rates in the model legume Medicago truncatula
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A quantitative model for characterizing the evolutionary history of mammalian gene expression
GEO Series GSE106077. Monodelphis domestica; Dasypus novemcinctus; Canis lupus familiaris; Mustela putorius furo; Oryctolagus cuniculus. 33 samples. Type: Expression profiling by high throughput sequencing.
A biophysical DNA binding model for the LEAFY transcription factor reveals the evolutionary fluidity of its binding sites
GEO Series GSE24568. Arabidopsis thaliana. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Evolutionary and functional analysis of DNA methyltransferases in micro-eukaryotes: Insights from the model diatom Phaeodactylum tricornutum [RNA-seq]
GEO Series GSE186856. Phaeodactylum tricornutum. 6 samples. Type: Expression profiling by high throughput sequencing.
Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart
GEO Series GSE229821. Danio rerio. 4 samples. Type: Expression profiling by high throughput sequencing.
Supplement to Inferring the evolutionary history of the Sino-Himalayan biodiversity hotspot using a Bayesian birth-death skyline model
<p>This repository contains the supplementary files for:</p> <p>Allen BJ, Vaughan TG, du Plessis L, Schouten TLA, Yuan Z, Willett SD, Stadler T. 2024. Inferring the evolutionary history of the Sino-Himalayan biodiversity hotspot using a Bayesian birth-death skyline model. Geological Society of London Special Publications, 549.</p> <p><strong>Description of files</strong></p> <p>This repository contains the cleaned tree file, raw log files, simulated trees, XML files for running the analyses in BEAST2, and R code to process the datasets.</p> <p>Liu_et_al_SinoHimalayan.nex - the phylogeny inferred by Liu et al. (2021), trimmed to only include the 8864 tips associated with genetic data</p> <p>Skyline_logs.zip - skyline logs produced by BEAST2 analyses (see below for naming convention)</p> <p>Regression_results.zip - results of the linear modelling between global palaeotemperature and diversification estimates</p> <p>Sim_trees.trees - the phylogenies simulated by ReMASTER</p> <p>Adequacy_logs.zip - skyline logs produced from the analyses using the simulated phylogenies</p> <p> </p> <p><strong>Description of BEAST2 XMLs</strong></p> <p>The XML files contain the BEAST2 configurations for:</p> <p>Liu_et_al_bd.xml, Liu_et_al_bd_high.xml, Liu_et_al_bd_mid.xml, Liu_et_al_bd_low.xml - skyline analyses using equal length time bins, with beta sampling prior, high fixed sampling, mid fixed sampling, and low fixed sampling respectively</p> <p>Liu_et_al_bd_geol.xml, Liu_et_al_bd_geol_high.xml, Liu_et_al_bd_geol_mid.xml, Liu_et_al_bd_geol_low.xml - skyline analyses using geological time bins, with beta sampling prior, high fixed sampling, mid fixed sampling, and low fixed sampling respectively</p> <p>Remaster_simulation.xml - simulating new phylogenies based on the inferred skylines using ReMASTER</p> <p>Sim_trees.xml - skyline analyses conducted on the simulated phylogenies</p> <p> </p> <p><strong>Description of R code</strong></p> <p>The R code is subdivided into the following files:</p> <p>BDSKY_skylines.R - code for processing and plotting skyline data from the BEAST2 log files</p> <p>BDSKY_adjacent_bins.R - code for the analyses examining the increase or decrease in evolutionary rates between adjacent skyline bins</p> <p>Plot_palaeotemp_comparison.R - code for plotting the diversification estimates against global palaeotemperature, as taken from Scotese et al. (2021)</p> <p>Palaeotemperature_regressions.R - code for linear modelling between global palaeotemperature and diversification estimates</p> <p>Remaster_processing.R - code for processing and plotting inferred skylines from the simulated datasets</p>
Sequential Therapies Modeled on Evolutionary Dynamics for Breast Cancer
ClinicalTrials.gov study NCT06409390. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart
GEO Series GSE195548. Danio rerio. 12 samples. Type: Expression profiling by high throughput sequencing.
Evolutionary and functional analysis of DNA methyltransferases in micro-eukaryotes: Insights from the model diatom Phaeodactylum tricornutum
GEO Series GSE186857. Phaeodactylum tricornutum. 9 samples. Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart
GEO Series GSE195549. Ciona robusta. 6 samples. Type: Expression profiling by high throughput sequencing.
Evolutionary and functional analysis of DNA methyltransferases in micro-eukaryotes: Insights from the model diatom Phaeodactylum tricornutum [Bisulfite-Seq]
GEO Series GSE186855. Phaeodactylum tricornutum. 3 samples. Type: Methylation profiling by high throughput sequencing.
Modeling Phenotypic Heterogeneity Towards Evolutionary Inspired Osteosarcoma Therapy
GEO Series GSE240278. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Fig. 7 Typosyllis antoni n in Description of a new syllid species as a model for evolutionary research of reproduction and regeneration in annelids
Fig. 7 Typosyllis antoni n. sp. a Male stolon, dorsal view. b Female stolon, dorsal view. c Male stolon still attached to the parental body, dorsal view. d Female stolon still attached to the parental body, dorsal view. e Detail of anterior appendages of male stolon, dicerous kind, dorsal view. f Ovaries within posterior segments of parental body and female stolon still attached. g Posterior segments with ovaries of a female that has not developed a stolon yet
Fig. 3 in Description of a new syllid species as a model for evolutionary research of reproduction and regeneration in annelids
Fig. 3 SEM images of Typosyllis antoni n. sp. a Chaetae fascicle, anterior parapodium. b, c Most dorsal chaetae, anterior parapodium. d, e Most dorsal chaetae, posterior parapodium. f Medially located chaetae, posterior parapodium. g Most ventral chaetae, posterior parapodium. h
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.