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266
datasets available to search
ShareScore release 0.7.1
Dataset results
266 results for “Interactome”
Symbiont-host interactome mapping reveals effector-targeted modulation of hormone networks and activation of host benefits
GEO Series GSE222356. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing.
Rewiring of the promoter-enhancer interactome and regulatory landscape in glioblastoma orchestrates gene expression underlying the neurogliomal synaptic communication [H3K27Me3.ChIPseq]
GEO Series GSE217035. Homo sapiens. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ [ITS OMAP ChIP]
GEO Series GSE217562. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin tolerant Staphylococcus aureus [RNase III-CLASH]
GEO Series GSE254532. Staphylococcus aureus subsp. aureus str. JKD6008. 10 samples. Type: Other.
The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin tolerant Staphylococcus aureus [RNA-seq]
GEO Series GSE254530. Staphylococcus aureus subsp. aureus str. JKD6008. 6 samples. Type: Expression profiling by high throughput sequencing.
RNA interactome profiling in hypervirulent Klebsiella pneumoniae reveals small RNA ArcZ as an inhibitor of mucoviscosity and virulence
GEO Series GSE260738. Klebsiella pneumoniae subsp. pneumoniae ATCC 43816. 14 samples. Type: Expression profiling by high throughput sequencing.
The miRNA-mRNA Interactome of murine iPSC-derived Chondrocytes in Response to Inflammatory Cytokines
GEO Series GSE147833. Mus musculus. 78 samples. Type: Expression profiling by high throughput sequencing; Other.
Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling
GEO Series GSE36902. Homo sapiens. 13 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing.
Capture and identification of the eIF4E:mRNA interactome in human cells
GEO Series GSE138473. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
The endogenous HBZ interactome in ATL leukemic cells reveals an unprecedented complexity of host interacting partners involved in RNA splicing
GEO Series GSE206085. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
Studying RNA-DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics
GEO Series GSE136141. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing; Other.
Rewiring of the promoter-enhancer interactome and regulatory landscape in glioblastoma orchestrates gene expression underlying the neurogliomal synaptic communication
GEO Series GSE217349. Homo sapiens. 159 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other.
Rewiring of the promoter-enhancer interactome and regulatory landscape in glioblastoma orchestrates gene expression underlying the neurogliomal synaptic communication [H3K27Ac.ChIP]
GEO Series GSE217031. Homo sapiens. 20 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Rewiring of the promoter-enhancer interactome and regulatory landscape in glioblastoma orchestrates gene expression underlying the neurogliomal synaptic communication [HiChIP]
GEO Series GSE217346. Homo sapiens. 15 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Autism-Related Transcription Factors Underlying the Sex-Specific Effects of Prenatal Bisphenol A Exposure on Transcriptome-Interactome Profiles in the Offspring Prefrontal Cortex
GEO Series GSE229073. Rattus norvegicus. 4 samples. Type: Expression profiling by high throughput sequencing.
Capturing the Interactome of Newly Transcribed RNA (PAR-CLIP)
GEO Series GSE100754. Homo sapiens. 4 samples. Type: Other.
Data from: Charting the NF-κB pathway interactome map
Inflammation is part of a complex physiological response to harmful stimuli and pathogenic stress. The five components of the Nuclear Factor κB (NF-κB) family are prominent mediators of inflammation, acting as key transcriptional regulators of hundreds of genes. Several signaling pathways activated by diverse stimuli converge on NF-κB activation, resulting in a regulatory system characterized by high complexity. It is increasingly recognized that the number of components that impinges upon phenotypic outcomes of signal transduction pathways may be higher than those taken into consideration from canonical pathway representations. Scope of the present analysis is to provide a wider, systemic picture of the NF-κB signaling system. Data from different sources such as literature, functional enrichment web resources, protein-protein interaction and pathway databases have been gathered, curated, integrated and analyzed in order to reconstruct a single, comprehensive picture of the proteins that interact with, and participate to the NF-κB activation system. Such a reconstruction shows that the NF-κB interactome is substantially different in quantity and quality of components with respect to canonical representations. The analysis highlights that several neglected but topologically central proteins may play a role in the activation of NF-κB mediated responses. Moreover the interactome structure fits with the characteristics of a bow tie architecture. This interactome is intended as an open network resource available for further development, refinement and analysis.
Mapping of RNA Interactomes in Adenoma-carcinoma Sequence of Human Colorectal cancer
GEO Series GSE221551. Homo sapiens. 9 samples. Type: Other.
ESR1 and p53 Interactome Defines Mechanisms of Therapeutic Response to Tamoxifen Therapy in Luminal Breast Cancer Patients
GEO Series GSE263089. Homo sapiens. 35 samples. Type: Expression profiling by high throughput sequencing.
Capturing the Interactome of Newly Transcribed RNA
GEO Series GSE100756. Homo sapiens. 11 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.