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452 results for “Mitogenomics”
FIGURE 3 in Complete mitochondrial genomes of three crickets (Orthoptera: Gryllidae) and comparative analyses within Ensifera mitogenomes
FIGURE 3. Mitogenome organization across sequenced Ensifera. Genome organization of (A) most sequenced ensiferans and proposed insect ancestor; (B) Gryllinae species; (C) the two Sinochlora species; (D) Phyllomimus detersus of Pseudophyllinae; (E) Ruidocollaris obscura of Phaneropterinae. The circular mitogenomes are linearized to do better presentation. The translocated regions are highlighted in color. Gene lengths are not to scale.
FIGURE 2 in Complete mitochondrial genomes of three crickets (Orthoptera: Gryllidae) and comparative analyses within Ensifera mitogenomes
FIGURE 2. Potential stem-loop structures and their location of Gryllidea. (A) the location of the predicted stem-loop in the mitogenome of Gryllidea, (B) potential stem-loop structures of cricket mitogenomes from Gryllidea
Figure 2 in Mitogenomics and the genetic differentiation of contemporary Balaena mysticetus (Cetacea) from Svalbard
Figure 2. Bayesian skyline plot illustrating the temporal changes in the genetic diversity of mitogenomes in Svalbard population bowhead whales. The top of the figure illustrates the time in years before present when using the 95% HPD interval of the estimated divergence time for the calculation of µ.
FIGURE 2 in Mitogenome of Xya pfaendleri (Orthoptera: Caelifera): Its comparative description and phylogenetic position within Tridactylidea
FIGURE 2. The chronogram of Tridactylidea, with the bootstrap support of ML (lower cell of the box) and posterior probability of BEAST (upper cell of the box) analyses (ages in mya are shown on the right of each node; the node calibrated by 202.67 ± 40 mya based on Song et al. (2015) is denoted by a black circle; X. japonica-Xj1 refers to MK903575 and X. japonica-Xj2 KC555032 GenBank sequences).
FIGURE 1 in Mitogenome of Xya pfaendleri (Orthoptera: Caelifera): Its comparative description and phylogenetic position within Tridactylidea
FIGURE 1. The map of the mitochondrial genome of Xya pfaendleri (Photo credit: Dimitǎr Boevski, https://www.inaturalist. org/observations/127539974)
FIGURE 4 in The third opinion on fern phylogenetics with novel insights into their mitogenome evolution
FIGURE 4. Molecular evolutionary patterns in the mitogenome and plastome markers. Mean values for each metric are represented by black points.
FIGURE 3 in The third opinion on fern phylogenetics with novel insights into their mitogenome evolution
FIGURE 3. Lineages with conspicuous evolutionary rates discussed in the text (high rate indicated in red and low rate in blue). A. Maximum likelihood mitogenome phylogram. B. Maximum likelihood plastome phylogram.
FIGURE 2 in The third opinion on fern phylogenetics with novel insights into their mitogenome evolution
FIGURE 2. Time calibrated plastome tree based on 51 fern species and 31 markers. Blue horizontal bars show the 95% HPD ranges of estimated node ages. For the calibrated nodes both effective prior and posterior distributions are shown. Green curves represent the effective prior and magenta curves posterior distributions. Posterior Probability values are shown only for those nodes that were not fully supported.
FIGURE 1. A in The third opinion on fern phylogenetics with novel insights into their mitogenome evolution
FIGURE 1. A. Time calibrated mitogenome tree based on 51 fern species and 33 markers. Blue horizontal bars show the 95% HPD ranges of estimated node ages. For the calibrated nodes both effective prior and posterior distributions are shown. Green curves represent the effective prior and magenta curves posterior distributions. Posterior Probability values are shown only for those nodes that were not fully supported. B. Lineages through time (LTT) plots for mitogenome shown in pale blue and plastome trees shown in grey. For LTT plots 100 trees were randomly picked from the posterior of both genomes.
Comparison of mitogenomes of three Petalocephala species (Hemiptera: Cicadellidae: Ledrinae) and their phylogenetic analysis
<p>Ledrinae is an ancient group of leafhoppers with a unique appearance. <em>Petalocephala</em> is the largest Ledrinae genus that is difficult to identify except by dissecting the male genitals. To date, research on Ledrinae is relatively less compared with other leafhoppers. Therefore, to better understand this group, we sequenced and analyzed three complete <em>Petalocephala</em> mitochondrial genomes. We comparatively analyzed these general <em>Petalocephala</em> genomic features (including size, AT content, AT/GC skew, 13 protein-coding gene nucleotide compositions, etc.), and predicted <span>22 tRNA</span> secondary structures. </p>
Supplementary material 1 from: Luo J, Zhang R, Deng W (2024) First mitogenomic characterization of Macromotettixoides (Orthoptera, Tetrigidae), with the descriptions of two new species. ZooKeys 1195: 95-120. https://doi.org/10.3897/zookeys.1195.112623
Mitochondrial genome comparison of 37 species in Tetrigidae, the initiation and termination codons of PCGs of mitogenomes in Tetrigidae
Figure 4 in Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)
Figure 4. Phylogenetic tree of the Unionidae+Margaritiferidae estimated from 28 concatenated individual mtDNA gene sequences, i.e. 14 from female-type (12 protein-coding and 2 rRNA genes) and 14 (12 protein-coding and 2 rRNA genes) from male-type mitochondria. Values for branch support above each node represent Bayesian posterior probabilities percentage/ maximum likelihood bootstrap.
Figure 3 in Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)
Figure 3. Phylogenetic tree of the Unionidae+Margaritiferidae estimated from 14 concatenated individual mtDNA gene sequences (12 protein-coding and 2 rRNA genes). Values for branch support above each node represent Bayesian posterior probabilities percentage/maximum likelihood bootstrap support. *Supported values ≥ 95 are represented by an asterisk.
Figure 1 in Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)
Figure 1. Recent multi-locus phylogenetic hypotheses on Gonideinae sensu Pfeiffer et al. (2019). Vertical bars indicate subfamilies recognized in respective publications. Note that Froufe et al. (2020) adopted a new systematic framework with three instead of two family-group levels, and thus, traditional tribes (ending -ini) are considered subtribes (ending -ina) in that study.
Figure 6 in Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)
Figure 6. Relationship between (A) mean Ka/Ks and substitution rate (μ) per female-type (full circles) and male-type (empty circles) mtDNA protein-coding gene; and (B) differences between male- and female-type K a /K s and μ per proteincoding mtDNA gene.
Figure 2 in Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)
Figure 2. Gene maps of the F- and M-type mitochondrial genomes of Lens contradens, Physunio superbus, Hyriopsis bialata and Rectidens sumatrensis. Genes positioned inside the circle are encoded on the heavy strand, and genes outside the circle are encoded on the light strand. Colour codes: small and large ribosomal RNAs (red); transfer RNAs (purple); M-orf, F-specific open reading frame (yellow); M-orf, M-specific open reading frame (yellow); protein-coding genes (green).
Figure 5 in Mitogenomic phylogeny and fossil-calibrated mutation rates for all F- and M-type mtDNA genes of the largest freshwater mussel family, the Unionidae (Bivalvia)
Figure 5. Fossil-calibrated ultrametric chronogram of the Unionidae calculated under a lognormal relaxed clock model and a Yule process speciation implemented in BEAST v.1.10.1 and obtained for the complete F-type mitogenome data set. The newly sequenced tribe-level taxa are coloured red. An outgroup sample (Margaritiferidae) has been removed for better visualization (but see original BEAST tree in Supporting Information, Fig. S1A). Bars indicate 95% confidence intervals of the estimated divergence times between lineages (Mya). Black numbers near nodes are mean ages (Mya). Colour labels indicate the F-mtDNA gene order (UF1, UF2, and UF3). Stratigraphic chart according to the International Commission on Stratigraphy v.2018/08 (www.stratigraphy.org). Abbreviations: J, Jurassic; K, Cretaceous; N, Neogene; Pg, Palaeogene; Q, Quaternary.
FIGURE 16 in Contribution to the Chinese subfamily Rhaphidophorinae Walker, 1869 (Orthoptera: Rhaphidophoridae: Rhaphidophorinae) IV: Seven new species of Rhaphidophora and one new mitogenome
FIGURE 16. Rhaphidophora spinita sp. nov. Male: A. head in frontal view; B–C. head and thoraces: B. dorsal view, C. lateral view; D–G. apex of abdomen: D. lateral view, E. apical view, F. apical and slightly dorsal view, G. ventral and slightly lateral view; H. tarsus of hind leg in lateral view.
FIGURE 15 in Contribution to the Chinese subfamily Rhaphidophorinae Walker, 1869 (Orthoptera: Rhaphidophoridae: Rhaphidophorinae) IV: Seven new species of Rhaphidophora and one new mitogenome
FIGURE 15. Rhaphidophora shii sp. nov. Female: A. head in frontal view; B–C. head and thoraces: B. lateral view, C. dorsal view; D–G. apex of abdomen: D. dorsal view, E. dorsal and slightly apical view, F. lateral view, G. ventral view; H. tarsus of hind leg in lateral view.
FIGURE 18. Rhaphidophora xishuang Gorochov, 2012 in Contribution to the Chinese subfamily Rhaphidophorinae Walker, 1869 (Orthoptera: Rhaphidophoridae: Rhaphidophorinae) IV: Seven new species of Rhaphidophora and one new mitogenome
FIGURE 18. Rhaphidophora xishuang Gorochov, 2012. Female: A. head in frontal view; B–C. head and thoraces: B. lateral view, C. dorsal view; D–G. apex of abdomen: D. apico-dorsal view, E. dorsal view, F. lateral view, G. ventral view; H. tarsus of hind leg in lateral view.
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.