Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
1,249
datasets available to search
ShareScore release 0.9.0
Dataset results
1,249 results for “R data”
FIG. 1 in New data on the distribution of the genus Roeseliana Zeuner, 1941 (Orthoptera, Tettigoniidae, Tettigoniinae) in the southwestern Balkans, with description of R. epirotica n. sp.
FIG. 1. — Map of known localities of Roeseliana Zeuner, 1941 genus. Symbols: triangle, Roeseliana bispina (Bolivar, 1899);circle, Roeseliana ambitiosa (Uvarov, 1924); crossed out circle, former localities of R. ambitiosa to be checked; concentric circles, Roeseliana epirotica n. sp.
FIG. 4 in New data on the distribution of the genus Roeseliana Zeuner, 1941 (Orthoptera, Tettigoniidae, Tettigoniinae) in the southwestern Balkans, with description of R. epirotica n. sp.
FIG. 4. — Comparison of the titillators of the two geographically close species: A, Roeseliana epirotica n. sp. ♂; B, Roeseliana ambitiosa (Uvarov, 1924) ♂.
Data and R scripts associated with Clark, Moles, Fazlioglu, Brandenburger & Hartley, "Rapid loss of phenotypic plasticity in the introduced range of the beach daisy, Arctotheca populifolia."
<p>Data to accompany article accepted for publication in Journal of Ecology.</p> <p><strong>"Rapid loss of phenotypic plasticity in the introduced range of the beach daisy, <em>Arctotheca populifolia"</em></strong></p> <p>By Charlie D. Clark, Angela T. Moles, Fatih Fazlioglu, Claire R. Brandenburger, & Stephen Hartley</p> <p>1 zip file that contains the following:</p> <p> 2 datasets (xlsx format)</p> <p> 9 R scripts to run the analyses and produce figures</p>
Data and R-scripts for estimating carbon dioxide emissions from drained peatland forest soils for the greenhouse gas inventory of Finland
<p><strong> Introduction</strong></p> <p>A new method for estimating carbon dioxide emissions from rained peatland forest soils was developed for the Greenhouse Gas Inventory of Finland (GHG inventory). The method is based on a set of models (Ojanen et al. 2014, Tuomi et al., 2009) that dynamically compile all relevant carbon inputs and outputs into a time series of soil CO<sub>2</sub> emission. A complete description of the method is described in Alm et al. (2023). Here we present the input data and R-scripts (R Core Team, 2020) for computing the time series from year 1990 to 2022 of CO<sub>2</sub> emission from soil in forest land on drained organic soil, like it was reported by the Finnish GHG inventory (Statistics Finland, 2023).</p> <p><strong>Time series data </strong></p> <p>The source of forest and area data is the Finnish National Forest Inventory (NFI) as a part of Luke Statutory Services. The NFI standing forest data in the data files includes annual country-wide estimates of mean basal area and standing biomass of Scots pine (<em>Pinus sylvestris</em> L.), Norway spruce (Picea abies (L.) H. Karst) and all the broadleaved forest trees combined. The data concerns forest land on drained organic soil only (class FRA 1 according to the FAO forest land definition).</p> <p>The NFI data for each year has been averaged by different drained peatland forest site types (FTYPE) and by inventory regions of southern and northern Finland. The areas and proportions of FTYPEs of all drained peatland “forests remaining forests” (i.e., forests that have not undergone another change in land use in the past 20 years) in southern and northern Finland (Alm et al., 2023), derived from NFI12 (2014–2018).</p> <p>Annual litter input from harvest residues was estimated using statistics of harvested stem volumes by species, collected and published by Luke (Luke statistics). The stem volumes were converted to whole trees and further to litter fractions and further to The share of residues remaining in forest is estimated by subtracting the amount of the logging residues collected for energy use, the data obtained from Luke statistics/energy. The biomass of live trees, annual litterfall from live trees aboveground and root litter belowground are derived from the National Forest Inventory of Finland (inventory rounds NFI8 to NFI13). The R-code also includes calculation of annual litter production from the harvesting residues.</p> <p>The regression-based transfer models, implemented in the R-code, also need meteorological time series inputs: The soil organic matter decomposition model (Ojanen et al. 2014) uses May-October mean temperature. Decomposition model yasso07 (Tuomi et al., 2009), applied for estimating the CO<sub>2</sub> release by decomposition of harvesting residues and above ground litter from natural mortality, is constrained by annual temperature, annual temperature amplitude and annual precipitation. Starting from the original country-wide grid produced by the Finnish Meteorological Institute (FMI) the weather time series were spatially averaged so that the FMI weather grid values were collected from those locations where peatlands representing each FTYPE in southern and northern Finland were observed by the NFI, respectively.</p> <p>The pre-prepared input data are given in files, see Table 1 for descriptions.</p> <p> </p> <p> </p> <p>Table 1. Description of input data files.</p> <table> <tbody> <tr> <td> <p><strong>File</strong></p> </td> <td> <p><strong>Description of data</strong></p> </td> </tr> <tr> <td> <p>basal.areas.csv</p> </td> <td> <p>Time series of years 1990-2022 for annual average basal area (m<sup>2</sup> ha<sup>-1</sup>) by year, by peatland forest site type (peat_type) and by tree species or group (tree_type).</p> <p> </p> <p>Values of peat_type correspond to FTYPE:</p> <p>1 Herb-rich type</p> <p>2 <em>Vaccinium myrtillus</em> type</p> <p>4 <em>Vaccinium vitis-idaea</em> type</p> <p>6 Dwarf shrub type</p> <p>7 <em>Cladina</em> type</p> <p> </p> <p>Values of tree species or group correspond to:</p> <p>1 Scots pine</p> <p>2 Norway spruce</p> <p>3 Broadleaved species</p> </td> </tr> <tr> <td> <p>biomass.csv</p> </td> <td> <p>Time series of years 1990-2022 for annual biomass (biomass, t ha<sup>-1</sup> of dry mass) by year, by biomass component, by tree species and by peatland forest site type (tkg).</p> <p> </p> <p>Values of peat_type correspond to FTYPE:</p> <p>1 Herb-rich type</p> <p>2 <em>Vaccinium myrtillus</em> type</p> <p>4 <em>Vaccinium vitis-idaea</em> type</p> <p>6 Dwarf shrub type</p> <p>7 <em>Cladina</em> type</p> <p> </p> </td> </tr> <tr> <td> <p>dead_litter.csv</p> </td> <td> <p>Time series of years 1990-2022 of annual aboveground litter from dead wood: Harvesting residues and natural mortality combined (C, t ha<sup>-1</sup> of dry mass; lognat_litter).</p> <p> </p> <p>Values of region correspond to GHG inventory region:</p> <p>south South Finland</p> <p>north North Finland</p> </td> </tr> <tr> <td> <p>ghgi_litter.csv</p> </td> <td> <p>Time series of years 1990-2022 for litter AWEN-fractions (A=acid soluble, W=water soluble, E=ethanol soluble, N=non-soluble; C, t ha<sup>-1</sup>) by different litter types: Above-ground coarse woody litter (coarse_woody_litter), fine woody litter (fine_woody_litter), non-woody litter (non_woody_litter) by litter source and deposition type by region. “org” denotes organic soil.</p> <p> </p> <p>Values of region correspond to GHG inventory region:</p> <p>south South Finland</p> <p>north North Finland</p> <p> </p> <p>Values of ground correspond to litter deposition environment:</p> <p>above Above-ground litter</p> <p>below Below-ground litter</p> </td> </tr> <tr> <td> <p>lognat_decomp.csv</p> </td> <td> <p>Time series of years 1990-2022 for C, t ha<sup>-1</sup> of dry mass, decomposed from logging residues and natural mortality by region.</p> <p> </p> <p>Values of variable “region” correspond to GHG inventory region:</p> <p>south South Finland</p> <p>north North Finland</p> </td> </tr> <tr> <td> <p>logyasso_weather_data.csv</p> </td> <td> <p>Time series of years 1990-2022 for regional (region) precipitation sum (mm, sum_P), average annual temperature (°C, mean_T) and amplitude of the annual temperature (°C , ampli_T).</p> <p> </p> <p>Values of region correspond to GHG inventory region:</p> <p>south South Finland</p> <p>north North Finland</p> <p> </p> </td> </tr> <tr> <td> <p>total_area.csv</p> </td> <td> <p>Areas (ha) of drained peatland forests remaining forest land by region and peat_type.</p> <p> </p> <p>Values of variable “region” correspond to GHG inventory region:</p> <p>south South Finland</p> <p>north North Finland</p> <p> </p> <p>Values of peat_type correspond to FTYPE:</p> <p>1 Herb-rich type</p> <p>2 <em>Vaccinium myrtillus</em> type</p> <p>4 <em>Vaccinium vitis-idaea</em> type</p> <p>6 Dwarf shrub type</p> <p>7 <em>Cladina</em> type</p> <p> </p> </td> </tr> <tr> <td> <p>weather_data.csv</p> </td> <td> <p>Time series of years 1990-2022 for 30-year rolling mean temperature for the May-October period (roll_T) used by the soil decomposition models. The values are calculated for each FTYPE (peat_type) using their spatial distributions (see details in Alm et al., 2023).</p> <p> </p> <p>Values of variable “region” correspond to GHG inventory region:</p> <p>south South Finland</p> <p>north North Finland</p> <p> </p> <p>Values of peat_type correspond to FTYPE:</p> <p>1 Herb-rich type</p> <p>2 <em>Vaccinium myrtillus</em> type</p> <p>4 <em>Vaccinium vitis-idaea</em> type</p> <p>6 Dwarf shrub type</p> <p>7 <em>Cladina</em> type</p> <p> </p> </td> </tr> </tbody> </table> <p> </p> <p><strong>The R-scripts</strong></p> <p>The scripts are an excerpt from the Finnish greenhouse gas inventory code set, applying the necessary pre-processed input data and producing the soil CO<sub>2</sub> emissions for each FTYPE separately. The necessary R-packages (R Core Team, 2020) are managed in the script LIBRARIES.R.</p> <p>Guidance for running the R-scripts is given in the README.txt.</p> <p><strong>References</strong></p> <p>Alm, J., Wall, A., Myllykangas, J-P., Ojanen, P., Heikkinen, J., Henttonen, H. M., Laiho, R., Minkkinen, K., Tuomainen, T. and Mikola, J. A new method for estimating carbon dioxide emissions from drained peatland forest soils for the greenhouse gas inventory of Finland. Biogeosciences https://doi.org/10.5194/bg-20-1-2023, 2023.</p> <p>LUKE Statistics</p> <ul> <li>https://www.luke.fi/en/statistics/total-roundwood-removals-and-drain, last access 8.12.2022.</li> </ul> <ul> <li>https://www.luke.fi/en/statistics/commercial-fellings/commercial-fellings-72023. last access 8.12.2022.</li> </ul> <p>Statistics Finland 2023. URL: https://unfccc.int/documents/627718 (last access 13.9.2023).</p> <p>Ojanen, P., Lehtonen, A., Heikkinen, J., Penttilä, T., and Minkkinen, K.: Soil CO2 balance and its uncertainty in forestry drained peatlands in Finland, Forest Ecol. Manage., 325, 60–73, 2014.</p> <p>R Core Team: R: A language and environment for statistical computing. R Foundation forStatistical Computing, Vienna, Austria, URL https://www.R-project.org, 2020.</p> <p>Tuomi, M., Thum, T., Järvinen, H., Fronzek, S., Berg, B., Harmon, M., Trofymow, J.A., Sevanto, S. and Liski, J.: Leaf litter decomposition - Estimates of global variability based on Yasso07 model, Ecol. Modell. 220 (23):3362-3371, 2009.</p>
Data for: rtrees: An R package to assemble phylogenetic trees from megatrees
Open the record for dataset details and reuse information.
Data from: Ppgm: an R package for integrating neontological, palaeontological, and climate data in a phylogenetic comparative framework
Open the record for dataset details and reuse information.
R scripts, input and output data for: Season of death, pathogen persistence and wildlife behaviour alter number of anthrax secondary infections from environmental reservoirs
Open the record for dataset details and reuse information.
Area and Timing data and R script for: 3D scanning as a tool to measure growth rates of live coral microfragments used for coral reef restoration
Open the record for dataset details and reuse information.
Data and R code used for the GLMM and NBDA analyses in 'Captive Asian short-clawed otters (Aonyx cinereus) learn to exploit unfamiliar natural prey'
Open the record for dataset details and reuse information.
Data and R code used in: Plant geographic distribution influences chemical defenses in native and introduced Plantago lanceolata populations
Open the record for dataset details and reuse information.
specleanr: An R package for automated flagging of environmental outliers in ecological data for modeling workflows
Open the record for dataset details and reuse information.
Extended data tables to Haering and Habermann, F1000Res, RNfuzzyApp: an R shiny RNA-seq data analysis app for visualisation, differential expression analysis, time-series clustering and enrichment analysis
Open the record for dataset details and reuse information.
Data and R script for: Shoaling behaviour in response to turbidity in three-spined sticklebacks
Open the record for dataset details and reuse information.
Data and R code from: Relics of beavers past: time and population density drive scale-dependent patterns of ecosystem engineering
Open the record for dataset details and reuse information.
Data and R script from: Females prioritize future over current offspring in wild seasonally breeding Assamese macaques
Open the record for dataset details and reuse information.
Data and R-scripts from: Multiple stressors: negative effects of nest predation on the viability of a threatened gull in different environmental conditions
Open the record for dataset details and reuse information.
Data and R code from: Fin whale song evolution in the North Atlantic
Open the record for dataset details and reuse information.
spectre: An R package to estimate spatially-explicit community composition using sparse data
Open the record for dataset details and reuse information.
Data from: hespdiv: an R package for spatially constrained, hierarchical and contiguous regionalization in palaeobiogeography
Open the record for dataset details and reuse information.
Data from: The article Euclimatch: An R package for climate matching with Euclidean distance metrics
Open the record for dataset details and reuse information.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.