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datasets available to search
ShareScore release 0.9.0
Dataset results
149 results for “R package”
Figure 2 from: Sonet G, Jordaens K, Nagy Z, Breman F, de Meyer M, Backeljau T, Virgilio M (2013) Adhoc: an R package to calculate ad hoc distance thresholds for DNA barcoding identification. ZooKeys 365: 329-336. https://doi.org/10.3897/zookeys.365.6034
Figure 2 - Estimation of the ad hoc distance threshold. Example of output obtained using the function adhocTHR with default settings (30 arbitrary distance thresholds, linear fit and an estimated relative identification error (RE) of 5%). The following message was given by the function: "for a RE of 0.05 use a threshold of 0.0334".
Data and R Code from "PAT-GEOM: A Software Package for the Analysis of Animal Patterns" (published in Methods in Ecology and Evolution)
<p>Datasets for Figures 2 and 4 in the article "PAT-GEOM: A Software Package for the Analysis of Animal Patterns" (published in Methods in Ecology and Evolution) and the R code used to perform the analysis described in the article.</p>
Supporting data for "onlineFDR: an R package to control the false discovery rate for growing data repositories"
<p>Supporting data for the manuscript "onlineFDR: an R package to control the false discovery rate for growing data repositories"</p>
Cloeon dipterum annotation R package (org.Cdipterum.eg.db) and respective files for the custom built
<p>### Updates will come soon ....</p>
Fig. 3 in A new R package and web application for detecting bilateral asymmetry in parasitic infections
Fig. 3. Volcano plot: statistical significance (-log (p-value)) of 10 G-tests for asymmetry of parasite distributions in individual hosts plotted against fold difference (log2 ratio) in parasite abundance between right and left eyes. Each point in the scatterplot represents the parasite distribution between eyes (excluding lenses) in an individual host. The G-test p-values were adjusted using the Benjamini and Hochberg (1995) procedure before -log10 transformation. The dashed horizontal line represents the p-value threshold for a 5% false discovery rate. Parasite distributions deviating significantly from symmetry are shown as red squares, whereas those not differing significantly from a 1: 1 ratio are represented by blue circles.
Data from: phenotools: an R package for visualizing and analyzing phenomic datasets
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Data from: pavo: an R package for the analysis, visualization and organization of spectral data
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Data from: TipDatingBeast: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST
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Data from: PrimerMiner: an R package for development and in silico validation of DNA metabarcoding primers
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Data from: strap: an R package for plotting phylogenies against stratigraphy and assessing their stratigraphic congruence
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Data from: incR: a new R package to analyse incubation behaviour
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Data from: pcadapt: an R package to perform genome scans for selection based on principal component analysis
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Data from: RClone: a package to identify MultiLocus Clonal Lineages and handle clonal datasets in R
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Data from: Posterior predictive checks of coalescent models: P2C2M, an R package
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Individual-based simulations of genome evolution and ancestry: the GENOMEADMIXR R package
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phyloregion: R package for biogeographic regionalization and spatial conservation
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Data from: ggtree: an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
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GOES-R PLT Lightning Instrument Package (LIP)
The GOES-R PLT Lightning Instrument Package (LIP) dataset consists of electrical field measurements of lightning and navigation data collected by the Lightning Instrument Package (LIP) flown aboard a NASA ER-2 high-altitude aircraft during the GOES-R Post Launch Test (PLT) airborne science field campaign. The GOES-R PLT airborne science field campaign took place between March 21 and May 17, 2017 in support of the post-launch product validation of the Advanced Baseline Imager (ABI) and the Geostationary Lightning Mapper (GLM). These data files are available in ASCII format with browse imagery available in PDF format.
Figure 2b from: Briz-Redón Á (2019) SpNetPrep: An R package using Shiny to facilitate spatial statistics on road networks. Research Ideas and Outcomes 5: e33521. https://doi.org/10.3897/rio.5.e33521
Figure 2b "Network Edition" features. - Example of a road network uploaded into the application
Figure 1 from: Sonet G, Jordaens K, Nagy Z, Breman F, de Meyer M, Backeljau T, Virgilio M (2013) Adhoc: an R package to calculate ad hoc distance thresholds for DNA barcoding identification. ZooKeys 365: 329-336. https://doi.org/10.3897/zookeys.365.6034
Figure 1 - DNA barcoding identification using the best close match method.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.