Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
2,556
datasets available to search
ShareScore release 0.7.1
Dataset results
2,556 results for “RNAseq”
RNAseq expression data FADD/BID gene in MM patients
Open the record for dataset details and reuse information.
RNAseq of Apple Flower Stigma wash-off
<p>RNAseq of apple flower stigma wash-off. HiSeq 2x 150bp. </p>
BovReg_eqTL RNAseq demo input data as counts and aligned bam files
Open the record for dataset details and reuse information.
RNAseq workshop dataset
<p>archive containing subsets of rawreads, genomes and environment files</p>
RNAseq dataset
<p>dataset, genome and transcriptome to be used in a RNAseq workshop</p>
RNASeq de novo - toy dataset - 2 conditions 3 replicates paired-end 100bp 10000 reads
<p>Transcriptomes of duck livers (Anas platyrhynchos) with 2 diets: force-feeding (A) or not (B)</p>
Trinity assembly of thrips RNAseq data -THR-D
<p>de novo trinity assembly of Thrips RNAseq from Italy</p>
Trinity assembly of thrips RNAseq data -THR-B
<p>De novo Trinity assembly of RNAseq from Thrips</p>
RNAseq from normal human epidermal keratinocytes treated with C. acnes 6919 conditioned media and propionic acid
<p>Lipid synthesis is necessary for formation of epithelial barriers and homeostasis with external microbes. An analysis of the response of human keratinocytes to several different commensal bacteria on the skin revealed that <em>Cutibacterium acnes</em> induced a large increase in essential lipids including triglycerides, ceramides, cholesterol, and free fatty acids. A similar response occurred in mouse epidermis and in human skin affected with acne. Further analysis showed that this increase in lipids was mediated by short-chain fatty acids produced by <em>Cutibacterium acnes</em> and was dependent on increased expression of several lipid synthesis genes including glycerol3-phosphate-acyltransferase-3. Inhibition or RNA silencing of peroxisome proliferator–activated receptor–α (PPARα), but not PPARβ and PPARγ, blocked this response. The increase in keratinocyte lipid content improved innate barrier functions including antimicrobial activity, paracellular diffusion, and transepidermal water loss. These results reveal that metabolites from a common commensal bacterium have a previously unappreciated influence on the composition of epidermal lipids.</p>
Chickpea RNASeq dataset
<p>Chickpea dataset with metadata</p>
A single-cell RNAseq atlas of Schistosoma mansoni identifies a key regulator of blood feeding
Open the record for dataset details and reuse information.
Good vs poor responder RNAseq transcriptome profiles in DBA/2J mice
Open the record for dataset details and reuse information.
RNAseq from normal human epidermal keratinocytes treated with C. acnes 6919 conditioned media and propionic acid
Open the record for dataset details and reuse information.
Data from: Evaluation of TagSeq, a reliable low-cost alternative for RNAseq
Open the record for dataset details and reuse information.
RNAseq analysis of the response of Arabidopsis thaliana to fractional gravity under blue-light stimulation during spaceflight
Traveling to nearby extraterrestrial objects having a reduced gravity level (partial gravity) compared to Earth's gravity is becoming a realistic objective for space agencies. The use of plants as part of life support systems will require a better understanding of the interactions among plant growth responses including tropisms, under partial gravity conditions. Here, we present results from our latest space experiments on the ISS, in which seeds of Arabidopsis thaliana were germinated, and seedlings grew for six days under different gravity levels, namely micro-g, several intermediate partial-g levels, and 1g, and were subjected to irradiation with blue light for the last 48 hours. RNA was extracted from 20 samples for subsequent RNAseq analysis. Transcriptomic analysis was performed using the HISAT2-Stringtie-DESeq pipeline. Differentially expressed genes were further characterized for global responses using the GEDI tool, gene networks and for Gene Ontology (GO) enrichment.
RNAseq analysis of the response of Arabidopsis thaliana phytochrome mutants (PhyA PhyB) to fractional gravity under blue-light stimulation during spaceflight
Traveling to nearby extraterrestrial objects having a reduced gravity level (partial gravity) compared to Earth s gravity is becoming a realistic objective for space agencies. The use of plants as part of life support systems will require a better understanding of the interactions among plant growth responses including tropisms under partial gravity conditions. Here we present results from the Seedling Growth space experiments on the ISS to complement the previously released GLDS-251 dataset including seeds of Arabidopsis thaliana wildtype plants. Seeds were germinated and seedlings grew for six days under different gravity levels namely micro-g several intermediate partial-g levels and 1g and were subjected to irradiation with blue light for the last 48 hours. RNA was extracted was obtained for 20 wildtype samples for subsequent RNAseq analysis in GLDS-251 here we add 36 samples from similarly exposed PhyA and PhyB mutants.
RNAseq of ISP CD28+ cells stimulated with ImmunoCult
GEO Series GSE151080. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Characterization by RNAseq of malignant pleural mesothelioma cell lines and their response to palbociclib
GEO Series GSE195568. Homo sapiens. 33 samples. Type: Expression profiling by high throughput sequencing.
RNAseq comparison of fadR deletion mutant and the wild type strain
GEO Series GSE108018. Sulfolobus acidocaldarius DSM 639. 4 samples. Type: Expression profiling by high throughput sequencing.
RNAseq on Dengue specific mice immunoglobulin repertoires
GEO Series GSE139225. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.