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2,489
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ShareScore release 0.7.1
Dataset results
2,489 results for “SARS-CoV-2”
CORONASTEP: Monitoring of SARS-CoV-2 in Luxembourg wastewater
<p>This dataset presents the results of national-wide wastewater monitoring efforts in Luxembourg through the sampling of 13 different wastewater treatment plants across the country from March 2020 to 2023.</p>
Simulated reads for benchmarking SARS-CoV-2 lineage abundance estimation
<p>To evaluate the accuracy of lineage abundance estimates from amplicon-based and whole genome-based sequencing, we simulated paired-end reads from amplicons determined by AmpliDiff, and reads spanning full genomes. Abundances of lineages are based on the relative abundance of a lineage within the dataset. The data consists of the following 8 independent datasets:</p> <ul> <li>200 bp reads from the Netherlands based on AmpliDiff amplicons (1, 2, 5 or 10 amplicons) at 1000x coverage,</li> <li>400 bp reads from the Netherlands based on AmpliDiff amplicons (1, 2, 5 or 10 amplicons) at 1000x coverage,</li> <li>200 bp reads from the Netherlands based on whole genome sequencing at 100x coverage,</li> <li>400 bp reads from the Netherlands based on whole genome sequencing at 100x coverage,</li> <li>200 bp reads from Texas based on AmpliDiff amplicons (1, 2, 5 or 10 amplicons) at 1000x coverage,</li> <li>400 bp reads from Texas based on AmpliDiff amplicons (1, 2, 5 or 10 amplicons) at 1000x coverage,</li> <li>200 bp reads from Texas based on whole genome sequencing at 100x coverage,</li> <li>400 bp reads from Texas based on whole genome sequencing at 100x coverage.</li> </ul> <p>Every independent dataset contains 20 sets of reads (generated with different random seeds). The genomes used for the Netherlands-based simulations can be obtained via GISAID through accession id <a href="https://doi.org/10.55876/gis8.230825fe">EPI_SET_230825fe</a>, and the genomes used for the Texas-based simulations can be obtained via GISAID through accession id <a href="https://doi.org/10.55876/gis8.230825pe">EPI_SET_230825pe</a>.</p>
Dataset SeBluCo study: SARS-CoV-2-antibodies among German blood donors 2020 – 2022, a repetitive cross-sectional study
<p>The dataset is the result of a repetitive cross-sectional study in 28 regions in Germany on SARS-CoV-2 antibodies in residual samples of blood donors from April 2020 to April 2021, September 2021 and April/May 2022. These data were used to aide in monitoring the pandemic in Germany. Data were completely anonymised at the site of sample collection. Serological test results are accompanied by demographic data including sex, age and area of residence (assigned a level two Nomenclature des Unités Territoriales Statistiques (NUTS2)). </p><p>The file contains data (sheet "data") as well as the description of variable content and coding (sheet "variables").</p>
Exploring the Immune Response to SARS-CoV-2 modRNA Vaccines in Patients With Secondary Progressive Multiple Sclerosis (AMA-VACC)
ClinicalTrials.gov study NCT04792567. IPD Sharing: YES. Countries: 1. Publications: 1.
SARS-CoV-2 Immune Responses After COVID-19 Therapy and Subsequent Vaccine
ClinicalTrials.gov study NCT04952402. IPD Sharing: YES. Countries: 1. Publications: 0.
COVID-19 Study Assessing the Virologic Efficacy of REGN10933+REGN10987 Across Different Dose Regimens in Adult Outpatients With SARS-CoV-2 Infection
ClinicalTrials.gov study NCT04666441. IPD Sharing: YES. Countries: 1. Publications: 3.
Data from: Live imaging of SARS-CoV-2 infected airway epithelium cultures
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The benefit of augmenting open data with clinical data-warehouse EHR for forecasting SARS-CoV-2 hospitalizations in Bordeaux area, France
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Dataset for: Ultrarapid detection of SARS-CoV-2 RNA using a reverse transcription-free exponential amplification reaction, RTF-EXPAR
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Alternative Covid-19 mitigation measures in school classrooms: Analysis using an agent-based model of SARS-CoV-2 transmission
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PI3Kg inhibition circumvents inflammation and mortality in SARS-CoV-2 and other infections
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Online phylogenetics with matOptimize for SARS-CoV-2
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Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102974 (ID: mpro-x1458 / PDB: 5RFY)
Raw diffraction data for mpro-x1458 / PDB ID 5RFY (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFY) - SARS-CoV-2 main protease in complex with PCM-0102974 (SMILES:CC(C)N(C)C(=O)C1CCN(CC1)C(=O)CCl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102254 (ID: mpro-x1425 / PDB: 5RFX)
Raw diffraction data for mpro-x1425 / PDB ID 5RFX (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFX) - SARS-CoV-2 main protease in complex with PCM-0102254 (SMILES:COc1ccc(cc1)N2CCN(CC2)C(=O)CCl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102121 (ID: mpro-x1402 / PDB: 5RFU)
Raw diffraction data for mpro-x1402 / PDB ID 5RFU (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFU) - SARS-CoV-2 main protease in complex with PCM-0102121 (SMILES:ClCC(=O)N1CCN(CC1)S(=O)(=O)c2ccc(Cl)s2) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102432 (ID: mpro-x1392 / PDB: 5RFT)
Raw diffraction data for mpro-x1392 / PDB ID 5RFT (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFT) - SARS-CoV-2 main protease in complex with PCM-0102432 (SMILES:ClCC(=O)N1CC(c2ccccc2)c3ccccc3C1) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102169 (ID: mpro-x1385 / PDB: 5RFR)
Raw diffraction data for mpro-x1385 / PDB ID 5RFR (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFR) - SARS-CoV-2 main protease in complex with PCM-0102169 (SMILES:ClCC(=O)N1CCN(Cc2ccc(Br)s2)CC1) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102868 (ID: mpro-x1375 / PDB: 5RFN)
Raw diffraction data for mpro-x1375 / PDB ID 5RFN (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFN) - SARS-CoV-2 main protease in complex with PCM-0102868 (SMILES:Fc1ccc(cc1)N(C2CS(=O)(=O)C=C2)C(=O)CCl) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102190 (ID: mpro-x1382 / PDB: 5RFP)
Raw diffraction data for mpro-x1382 / PDB ID 5RFP (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFP) - SARS-CoV-2 main protease in complex with PCM-0102190 (SMILES:CC(NC(=O)CCl)c1cccc(Cl)c1) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
Raw diffraction data for structure of SARS-CoV-2 main protease with PCM-0102179 (ID: mpro-x1384 / PDB: 5RFQ)
Raw diffraction data for mpro-x1384 / PDB ID 5RFQ (see: https://www.ebi.ac.uk/pdbe/entry/pdb/5RFQ) - SARS-CoV-2 main protease in complex with PCM-0102179 (SMILES:ClCC(=O)Nc1cccc(c1)N2CCCC2=O) collected as part of an XChem crystallographic fragment screening campaign on beamline i04-1 at Diamond Light Source. The deposited structure was automatically processed with standard Diamond tools and PanDDA, however the raw data are being made available to allow reanalysis by any interested party. For more details see: https://www.diamond.ac.uk/covid-19/for-scientists/Main-protease-structure-and-XChem.html
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.