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123
datasets available to search
ShareScore release 0.9.0
Dataset results
123 results for “SNP genotyping”
Genotyping of Single Nucleotide Polymorphisms (SNP) in photosynthetic genes of Sorghum bicolor
GEO Series GSE102452. Sorghum bicolor. 359 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
SNP genotype data from induced Pluripotent Stem cells from Parkinson's Disease patients harboring mutations in the GBA1 gene, and from healthy control donors
GEO Series GSE99471. Homo sapiens. 13 samples. Type: SNP genotyping by SNP array; Genome variation profiling by SNP array.
Dataset with SNP genotypes for local goat breeds of Mongolia (PLINK format)
<p>SNP genotyping was performed with Goat 50K BeadChip (Illumina Inc., USA) containing ~60 000 SNP. Quality control was performed by setting a cutoff of 0.5 for the GenCall and GenTrain scores. SNP dataset was filtered to remove poorly genotyped individuals, loci genotyped in <90% of individuals and rare alleles using PLINK 1.9 (Chang et al. 2015) with geno 0.1 --mind 0.1 --maf 0.05 plink parameters. To ensure that our analysis would not be affected by the presence of SNP in strong linkage disequilibrium we also filtered data with --indep-pairwaise 50 5 0.2 PLINK filter. </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.