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152
datasets available to search
ShareScore release 0.9.0
Dataset results
152 results for “Single-cell multiome”
Integrated Single-Cell Multiomic Profiling of Caudate Nucleus Suggests Key Mechanisms in Alcohol Use Disorder
GEO Series GSE277313. Homo sapiens. 485 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Integrated single-cell multiomics uncovers foundational regulatory mechanisms of lens development and pathology [CUT&RUN]
GEO Series GSE236904. Gallus gallus. 20 samples. Type: Other.
Mapping disease-associated regulatory circuits by cell type from single-cell multiomics data (S. aureus scRNA-seq)
GEO Series GSE220189. Homo sapiens. 44 samples. Type: Expression profiling by high throughput sequencing.
Integrated single-cell multiomics uncovers foundational regulatory mechanisms of lens development and pathology.
GEO Series GSE236905. Gallus gallus. 37 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Improving stem cell-derived pancreatic islets using single-cell multiome-inferred regulomes [Childhool snRNA-seq]
GEO Series GSE202496. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Single-Cell Multiomics Reveals Distinct Cell States at the Top of the Human Hematopoietic Hierarchy [CITE-seq]
GEO Series GSE173076. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in Desmoplastic Small Round Cell Tumors [ATAC-seq]
GEO Series GSE267807. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Single-Cell Multiomics Reveals Distinct Cell States at the Top of the Human Hematopoietic Hierarchy
GEO Series GSE173077. Homo sapiens. 23 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Single-cell multiomics of human fetal hematopoiesis defines a developmental specific population and a fetal signature
GEO Series GSE192966. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing; Other.
Single-cell multiomics of CD4+ T cell clones in HIV-1 infected individuals
GEO Series GSE187515. Homo sapiens. 104 samples. Type: Expression profiling by high throughput sequencing; Other.
BiCCA: Bi-order multiomics integration of single-cell data
GEO Series GSE201491. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Single-cell multiome uncovers differences in glycogen metabolism underlying species-specific speed of development [mTORi]
GEO Series GSE275571. Homo sapiens; Mus musculus; Macaca fascicularis. 15 samples. Type: Expression profiling by high throughput sequencing.
Single-cell multiome uncovers differences in glycogen metabolism underlying species-specific speed of development
GEO Series GSE275572. Homo sapiens; Macaca fascicularis; Mus musculus. 23 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single nuclei chromatin accessibility and transcriptomic map of breast tissues of women of diverse genetic ancestry [10X single-cell multiome]
GEO Series GSE244585. Homo sapiens. 32 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Single-cell multiome uncovers differences in glycogen metabolism underlying species-specific speed of development [UGP2 KO]
GEO Series GSE275566. Homo sapiens; Macaca fascicularis. 2 samples. Type: Expression profiling by high throughput sequencing.
Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency [multiome]
GEO Series GSE242419. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Integrated single-cell multiomic analysis of HIV latency reversal reveals novel regulators of viral reactivation
GEO Series GSE242997. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-cell multiomics of neuronal activation reveals context dependent genetic controls of brain disorders
GEO Series GSE312445. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Single-Cell Multiomic Atlas of Human Cortical Development in Down Syndrome - Neural Cells in vitro Basic Characterisation Bulk RNA-seq Dataset
GEO Series GSE305135. Homo sapiens. 45 samples. Type: Expression profiling by high throughput sequencing.
Data for "A unified model-based framework for doublet/multiplet detection in single-cell multiomics data"
<p>This repository contains all the data necessary for replicating the COMPOSITE multiplet detection results featured in our manuscript, 'A Unified Model-Based Framework for Doublet/Multiplet Detection in Single-Cell Multiomics Data'. The data are ready to be directly used as input for the COMPOSITE cloud-based application or the Python package 'sccomposite' to replicate the results.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.