Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
ETMR stem-like state and chemo-resistance are supported by perivascular cells at single-cell resolution (spatial transcriptomics subset)
GEO Series GSE224477. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial transcriptomics reveals a low extent of transcriptionally active hepatitis B virus integration in patients with HBsAg loss
GEO Series GSE243367. Homo sapiens. 9 samples. Type: Expression profiling by high throughput sequencing.
Spatially preserved multi-region transcriptomic subtyping and biomarkers of outcome with chemoimmunotherapy in extensive-stage small cell lung cancer [IMfirst_DSP cohort]
GEO Series GSE261348. Homo sapiens. 175 samples. Type: Other.
Effects of inhibiting stearoyl-CoA desaturase (SCD) on the spatial transcriptome in a mouse model of Alzheimer's disease (AD)
GEO Series GSE275131. Mus musculus. 4 samples. Type: Other.
Protecting RNA Integrity for Spatial Transcriptomics While Improving Immunofluorescent Staining Quality
GEO Series GSE228891. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatially resolved transcriptome of brain white matter brain lesions of a patient with progressive multiple sclerosis
GEO Series GSE231586. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Astrocyte Elevated Gene-1/Metadherin (AEG-1/MTDH) in Myeloid Cells Regulates Metabolic Dysfunction-Associated Steatohepatitis (MASH) [Spatial Transcriptomics]
GEO Series GSE302842. Mus musculus. 2 samples. Type: Other.
Inducible CD147 up-regulation boosts persistent SARS-CoV-2 infection triggering severe COVID-19 independent of ACE2 [Spatial Transcriptomics]
GEO Series GSE298098. Macaca mulatta; Mus musculus. 24 samples. Type: Other.
Single-nucleus RNA-Seq and spatial transcriptomics characterization of Alzheimer’s Disease and Down Syndrome
GEO Series GSE233208. Homo sapiens; Mus musculus. 185 samples. Type: Expression profiling by high throughput sequencing; Other.
Intercellular signaling and synaptic deconstruction uncovered by single-cell and spatial transcriptomics in an AD tauopathy model
GEO Series GSE305314. Rattus norvegicus. 28 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples [CosMx]
GEO Series GSE299786. Homo sapiens. 4 samples. Type: Other.
Spatiotemporally Deciphering the Unknown Role of Persistent HPV Infection in Precancer to Cervical Cancer Progression: Integrating Single-Cell RNA-Sequencing Landscape and Spatial Transcriptomics Atla
GEO Series GSE208654. Homo sapiens. 4 samples. Type: Other.
Spatiotemporal heterogeneity of inflammatory changes in Alzheimer's disease analyzed spatially resolved transcriptome
GEO Series GSE174321. Mus musculus. 4 samples. Type: Other.
Genetically Engineered Brain Organoids Recapitulate Spatial and Developmental States of Glioblastoma Progression [Xenium Spatial Transcriptomics]
GEO Series GSE283497. Homo sapiens. 6 samples. Type: Other.
Spatial transcriptomics on Zika virus infected fetal brains of nonhuman primates
GEO Series GSE227533. Macaca nemestrina. 141 samples. Type: Other; Expression profiling by high throughput sequencing.
Single-nucleus and spatial transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD)
GEO Series GSE313090. Homo sapiens. 153 samples. Type: Expression profiling by high throughput sequencing; Other.
Temporal and Spatial Transcriptomic Dynamics across Brain Development in Xenopus laevis tadpoles
GEO Series GSE183193. Xenopus laevis. 30 samples. Type: Expression profiling by high throughput sequencing.
Clonal cell states link gastroesophageal junction tissues, metaplasia, and cancer [Spatial transcriptomics]
GEO Series GSE288235. Homo sapiens. 3 samples. Type: Other.
Investigation of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution
GEO Series GSE178537. Homo sapiens. 65 samples. Type: Expression profiling by high throughput sequencing.
Nova-ST: Nano-Patterned Ultra-Dense platform for spatial transcriptomics [Stereo-Seq]
GEO Series GSE256319. Mus musculus. 1 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.