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450 results for “Spatio-temporal”
Unlabeled Sentinel 2 time series dataset (validation): Self-supervised Spatio-Temporal Representation Learning of Satellite Image Time Series
<p>This is a part of the unlabeled Sentinel 2 (S2) L2A dataset composed of patch time series acquired over France used to pretrain U-BARN. For further details, see section IV.A of the pre-print article "Self-Supervised Spatio-Temporal Representation Learning Of Satellite Image Time Series" available <a href="https://hal.science/hal-04084839">here</a>. Each patch is constituted of the 10 bands [B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12] and the three masks ['CLM_R1', 'EDG_R1', 'SAT_R1']. The global dataset is composed of two disjoint datasets: training (9 tiles) and validation dataset (4 tiles).</p> <p>In this repo,<strong> only validation data</strong> are available. To download the full pretraining dataset, see <a href="https://doi.org/10.5281/zenodo.7891924">10.5281/zenodo.7891924</a></p> <table> <caption><strong>Global unlabeled dataset description</strong></caption> <tbody> <tr> <td>Dataset name</td> <td>S2 tiles</td> <td>ROI size</td> <td>Temporal extent</td> </tr> <tr> <td>Train</td> <td> <p>T30TXT,T30TYQ,T30TYS,T30UVU,</p> <p>T31TDJ,T31TDL,T31TFN,T31TGJ,T31UEP</p> </td> <td>1024*1024</td> <td>2018-2020</td> </tr> <tr> <td>Val</td> <td>T30TYR,T30UVU,T31TEK,T31UER</td> <td>256*256</td> <td>2016-2019</td> </tr> </tbody> </table> <p> </p>
Unlabeled Sentinel 2 time series dataset (training, T30TUVU): Self-Supervised Spatio-Temporal Representation Learning of Satellite Image Time Series
<p>This is a part of the unlabeled Sentinel 2 (S2) L2A dataset composed of patch time series acquired over France used to pretrain U-BARN. For further details, see section IV.A of the pre-print article "Self-Supervised Spatio-Temporal Representation Learning Of Satellite Image Time Series" available <a href="https://hal.science/hal-04084839">here</a>. Each patch is constituted of the 10 bands [B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12] and the three masks ['CLM_R1', 'EDG_R1', 'SAT_R1']. The global dataset is composed of two disjoint datasets: training (9 tiles) and validation dataset (4 tiles).</p> <p>In this repo,<strong> only data from the S2 tile T30UVU</strong> are available. To download the full pretraining dataset, see: <a href="https://doi.org/10.5281/zenodo.7891924">10.5281/zenodo.7891924</a></p> <table> <tbody> <tr> <td>Dataset name</td> <td>S2 tiles</td> <td>ROI size</td> <td>Temporal extent</td> </tr> <tr> <td>Train</td> <td> <p>T30TXT,T30TYQ,T30TYS,T30UVU,</p> <p>T31TDJ,T31TDL,T31TFN,T31TGJ,T31UEP</p> </td> <td>1024*1024</td> <td>2018-2020</td> </tr> <tr> <td>Val</td> <td>T30TYR,T30UWU,T31TEK,T31UER</td> <td>256*256</td> <td>2016-2019</td> </tr> </tbody> </table>
Unlabeled Sentinel 2 time series dataset (training, T30TYQ): Self-Supervised Spatio-Temporal Representation Learning of Satellite Image Time Series
<p>This is a part of the unlabeled Sentinel 2 (S2) L2A dataset composed of patch time series acquired over France used to pretrain U-BARN. For further details, see section IV.A of the pre-print article "Self-Supervised Spatio-Temporal Representation Learning Of Satellite Image Time Series" available <a href="https://hal.science/hal-04084839">here</a>. Each patch is constituted of the 10 bands [B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12] and the three masks ['CLM_R1', 'EDG_R1', 'SAT_R1']. The global dataset is composed of two disjoint datasets: training (9 tiles) and validation dataset (4 tiles).</p> <p>In this repo,<strong> only data from the S2 tile T30TYQ</strong> are available. To download the full pretraining dataset, see: <a href="https://doi.org/10.5281/zenodo.7891924">10.5281/zenodo.7891924</a></p> <table> <caption><strong>Global unlabeled dataset description</strong></caption> <tbody> <tr> <td>Dataset name</td> <td>S2 tiles</td> <td>ROI size</td> <td>Temporal extent</td> </tr> <tr> <td>Train</td> <td> <p>T30TXT,T30TYQ,T30TYS,T30UVU,</p> <p>T31TDJ,T31TDL,T31TFN,T31TGJ,T31UEP</p> </td> <td>1024*1024</td> <td>2018-2020</td> </tr> <tr> <td>Val</td> <td>T30TYR,T30UWU,T31TEK,T31UER</td> <td>256*256</td> <td>2016-2019</td> </tr> </tbody> </table>
Unlabeled Sentinel 2 time series dataset : Self-Supervised Spatio-Temporal Representation Learning of Satellite Image Time Series
<p>This repository list all the available repositories, to load the unlabeled Sentinel 2 (S2) L2A dataset used in the article<a href="https://ieeexplore.ieee.org/document/10414422/"> "Self-Supervised Spatio-Temporal Representation Learning Of Satellite Image Time Series"</a>. This dataset is composed of patch time series acquired over France. For further details, see section IV.A of the pre-print article, available <a href="https://hal.science/hal-04084839">here</a>. Each patch is constituted of the 10 bands [B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12] and the three masks ['CLM_R1', 'EDG_R1', 'SAT_R1']. The global dataset is composed of two disjoint datasets: training (9 tiles) and validation dataset (4 tiles).</p> <ul> <li>The validation dataset is available here : <a href="https://doi.org/10.5281/zenodo.7890452">10.5281/zenodo.7890452</a></li> <li>The training dataset is composed of 9 zenodo repositories, one for each S2 tiles. Here are the available repositories: <ul> <li>T31UEP<a href="http://https://doi.org/10.5281/zenodo.7899943"> 10.5281/zenodo.7899943</a></li> <li>T31TGJ <a href="https://doi.org/10.5281/zenodo.7899237">10.5281/zenodo.7899237</a></li> <li>T30TYS <a href="https://doi.org/10.5281/zenodo.7924193">10.5281/zenodo.7924193</a></li> <li>T31TFN <a href="https://doi.org/10.5281/zenodo.7896621">10.5281/zenodo.7896621</a></li> <li>T31TDL <a href="http://10.5281/zenodo.7896082">10.5281/zenodo.7896082</a></li> <li>T31TDJ <a href="https://doi.org/10.5281/zenodo.7895498">10.5281/zenodo.7895498</a></li> <li>T30UVU <a href="https://doi.org/10.5281/zenodo.7892410">10.5281/zenodo.7892410</a></li> <li>T30TYQ<a href="https://doi.org/10.5281/zenodo.7890542"> 10.5281/zenodo.7890542</a></li> <li>T30TXT <a href="https://doi.org/10.5281/zenodo.7875977">10.5281/zenodo.7875977</a></li> </ul> </li> </ul> <table> <tbody> <tr> <td>Dataset name</td> <td>S2 tiles</td> <td>ROI size</td> <td>Temporal extent</td> </tr> <tr> <td>Train</td> <td> <p>T30TXT,T30TYQ,T30TYS,T30UVU,</p> <p>T31TDJ,T31TDL,T31TFN,T31TGJ,T31UEP</p> </td> <td>1024*1024</td> <td>2018-2020</td> </tr> <tr> <td>Val</td> <td>T30TYR,T30UWU,T31TEK,T31UER</td> <td>256*256</td> <td>2016-2019</td> </tr> </tbody> </table>
Unlabeled Sentinel 2 time series dataset (training, T31TDJ): Self-Supervised Spatio-Temporal Representation Learning of Satellite Image Time Series
<p>This is a part of the unlabeled Sentinel 2 (S2) L2A dataset composed of patch time series acquired over France used to pretrain U-BARN. For further details, see section IV.A of the pre-print article "Self-Supervised Spatio-Temporal Representation Learning Of Satellite Image Time Series" available <a href="https://hal.science/hal-04084839">here</a>. Each patch is constituted of the 10 bands [B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12] and the three masks ['CLM_R1', 'EDG_R1', 'SAT_R1']. The global dataset is composed of two disjoint datasets: training (9 tiles) and validation dataset (4 tiles).</p> <p>In this repo,<strong> only data from the S2 tile T31TDJ</strong> are available. To download the full pretraining dataset, see: <a href="https://doi.org/10.5281/zenodo.7891924">10.5281/zenodo.7891924</a></p> <table> <caption><strong>Global unlabeled dataset description</strong></caption> <tbody> <tr> <td>Dataset name</td> <td>S2 tiles</td> <td>ROI size</td> <td>Temporal extent</td> </tr> <tr> <td>Train</td> <td> <p>T30TXT,T30TYQ,T30TYS,T30UVU,</p> <p>T31TDJ,T31TDL,T31TFN,T31TGJ,T31UEP</p> </td> <td>1024*1024</td> <td>2018-2020</td> </tr> <tr> <td>Val</td> <td>T30TYR,T30UWU,T31TEK,T31UER</td> <td>256*256</td> <td>2016-2019</td> </tr> </tbody> </table>
Unlabeled Sentinel 2 time series dataset (training, T31TFN): Self-Supervised Spatio-Temporal Representation Learning of Satellite Image Time Series
<p>This is a part of the unlabeled Sentinel 2 (S2) L2A dataset composed of patch time series acquired over France used to pretrain U-BARN. For further details, see section IV.A of the pre-print article "Self-Supervised Spatio-Temporal Representation Learning Of Satellite Image Time Series" available <a href="https://hal.science/hal-04084839">here</a>. Each patch is constituted of the 10 bands [B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12] and the three masks ['CLM_R1', 'EDG_R1', 'SAT_R1']. The global dataset is composed of two disjoint datasets: training (9 tiles) and validation dataset (4 tiles).</p> <p>In this repo,<strong> only data from the S2 tile T31TFN</strong> are available. To download the full pretraining dataset, see: <a href="https://doi.org/10.5281/zenodo.7891924">10.5281/zenodo.7891924</a></p> <table> <caption><strong>Global unlabeled dataset description</strong></caption> <tbody> <tr> <td>Dataset name</td> <td>S2 tiles</td> <td>ROI size</td> <td>Temporal extent</td> </tr> <tr> <td>Train</td> <td> <p>T30TXT,T30TYQ,T30TYS,T30UVU,</p> <p>T31TDJ,T31TDL,T31TFN,T31TGJ,T31UEP</p> </td> <td>1024*1024</td> <td>2018-2020</td> </tr> <tr> <td>Val</td> <td>T30TYR,T30UWU,T31TEK,T31UER</td> <td>256*256</td> <td>2016-2019</td> </tr> </tbody> </table>
Unlabeled Sentinel 2 time series dataset (training, T31TDL): Self-Supervised Spatio-Temporal Representation Learning of Satellite Image Time Series
<p>This is a part of the unlabeled Sentinel 2 (S2) L2A dataset composed of patch time series acquired over France used to pretrain U-BARN. For further details, see section IV.A of the pre-print article "Self-Supervised Spatio-Temporal Representation Learning Of Satellite Image Time Series" available <a href="https://hal.science/hal-04084839">here</a>. Each patch is constituted of the 10 bands [B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12] and the three masks ['CLM_R1', 'EDG_R1', 'SAT_R1']. The global dataset is composed of two disjoint datasets: training (9 tiles) and validation dataset (4 tiles).</p> <p>In this repo,<strong> only data from the S2 tile T31TDL</strong> are available. To download the full pretraining dataset, see: <a href="https://doi.org/10.5281/zenodo.7891924">10.5281/zenodo.7891924</a></p> <table> <caption><strong>Global unlabeled dataset description</strong></caption> <tbody> <tr> <td>Dataset name</td> <td>S2 tiles</td> <td>ROI size</td> <td>Temporal extent</td> </tr> <tr> <td>Train</td> <td> <p>T30TXT,T30TYQ,T30TYS,T30UVU,</p> <p>T31TDJ,T31TDL,T31TFN,T31TGJ,T31UEP</p> </td> <td>1024*1024</td> <td>2018-2020</td> </tr> <tr> <td>Val</td> <td>T30TYR,T30UWU,T31TEK,T31UER</td> <td>256*256</td> <td>2016-2019</td> </tr> </tbody> </table>
Unlabeled Sentinel 2 time series dataset (training, T31TGJ): Self-Supervised Spatio-Temporal Representation Learning of Satellite Image Time Series
<p>This is a part of the unlabeled Sentinel 2 (S2) L2A dataset composed of patch time series acquired over France used to pretrain U-BARN. For further details, see section IV.A of the pre-print article "Self-Supervised Spatio-Temporal Representation Learning Of Satellite Image Time Series" available <a href="https://hal.science/hal-04084839">here</a>. Each patch is constituted of the 10 bands [B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12] and the three masks ['CLM_R1', 'EDG_R1', 'SAT_R1']. The global dataset is composed of two disjoint datasets: training (9 tiles) and validation dataset (4 tiles).</p> <p>In this repo,<strong> only data from the S2 tile T31TGJ</strong> are available. To download the full pretraining dataset, see: <a href="https://doi.org/10.5281/zenodo.7891924">10.5281/zenodo.7891924</a></p> <table> <caption><strong>Global unlabeled dataset description</strong></caption> <tbody> <tr> <td>Dataset name</td> <td>S2 tiles</td> <td>ROI size</td> <td>Temporal extent</td> </tr> <tr> <td>Train</td> <td> <p>T30TXT,T30TYQ,T30TYS,T30UVU,</p> <p>T31TDJ,T31TDL,T31TFN,T31TGJ,T31UEP</p> </td> <td>1024*1024</td> <td>2018-2020</td> </tr> <tr> <td>Val</td> <td>T30TYR,T30UWU,T31TEK,T31UER</td> <td>256*256</td> <td>2016-2019</td> </tr> </tbody> </table>
Unlabeled Sentinel 2 time series dataset (training, T31UEP): Self-Supervised Spatio-Temporal Representation Learning of Satellite Image Time Series
<p>This is a part of the unlabeled Sentinel 2 (S2) L2A dataset composed of patch time series acquired over France used to pretrain U-BARN. For further details, see section IV.A of the pre-print article "Self-Supervised Spatio-Temporal Representation Learning Of Satellite Image Time Series" available <a href="https://hal.science/hal-04084839">here</a>. Each patch is constituted of the 10 bands [B2,B3,B4,B5,B6,B7,B8,B8A,B11,B12] and the three masks ['CLM_R1', 'EDG_R1', 'SAT_R1']. The global dataset is composed of two disjoint datasets: training (9 tiles) and validation dataset (4 tiles).</p> <p>In this repo,<strong> only data from the S2 tile T31UEP</strong> are available. To download the full pretraining dataset, see: <a href="https://doi.org/10.5281/zenodo.7891924">10.5281/zenodo.7891924</a></p> <table> <caption><strong>Global unlabeled dataset description</strong></caption> <tbody> <tr> <td>Dataset name</td> <td>S2 tiles</td> <td>ROI size</td> <td>Temporal extent</td> </tr> <tr> <td>Train</td> <td> <p>T30TXT,T30TYQ,T30TYS,T30UVU,</p> <p>T31TDJ,T31TDL,T31TFN,T31TGJ,T31UEP</p> </td> <td>1024*1024</td> <td>2018-2020</td> </tr> <tr> <td>Val</td> <td>T30TYR,T30UWU,T31TEK,T31UER</td> <td>256*256</td> <td>2016-2019</td> </tr> </tbody> </table>
Spatio-temporal Dynamics of Coworking Spaces Development: The Case of Selected Central European Capitals
<p>The dataset provides geolocation coordinates and years of activity of coworking spaces in the selected Central European capitals - Bratislava, Budapest, Prague, and Warsaw.</p>
The MALaria Spatio-temporal Wind-Outbreak Trajectories Simulation (MALSWOTS)
<p>A mechanistic-stochastic algorithm to identify clusters of super-spreader houses and their related stable hotspots by accounting for mosquito flight capabilities and the spatial configuration of malaria infections at the house level.</p>
Data from: Insect communities under skyglow: diffuse night-time illuminance induces spatio-temporal shifts in movement and predation
<p>We conducted our experiment at the iDiv Ecotron experimental facility, which is an indoor mesocosm facility consisting of independent, experimental chambers called “EcoUnits”. The Ecotron is located in Bad Lauchstädt, Saxony-Anhalt, Germany, at the Experimental Research Station of the Helmholtz Centre for Environmental Research (UFZ, 51.3917° N, 11.8762° E). Multiple environmental conditions in the EcoUnits can be fully controlled (e.g., nutrient supply and irrigation). Each EcoUnit has internal dimensions of 1.46 m × 1.46 m × 1.50 m (L × W × H, aboveground) and 1.24 m × 1.24 m × 0.80 m (L × W × H, belowground) with the soil surface area measuring 1.54 m².</p> <p>To assess the interactive effects of diffuse nighttime illuminance and landscape structure on animal movement patterns, we established a patch-grassland system which consisted of four meadow patches within each of the corners of an EcoUnit, separated by an area of bare ground. The EcoUnits were filled with 1.23 m<sup>3</sup> of unsterilised and homogenised soil from the vicinity of the iDiv Ecotron, and plant communities of 16 plant species were sown on February 4th 2020. We allowed for a settlement phase of roughly 5 months before starting our measurements.</p> <p> </p> <p>Each heading below describes columns in the two datasets that describe the movement activity (RFID sensor detections) and predation (bite marks left on artificial caterpillar prey dummies) by the experimental insect communities.</p> <p> </p> <p><strong>timestamp:</strong> Continuous value indicating the time and date (format: DD/MM/YYYY hh:mm:ss, timezone: UTC+2) at which a tagged individual was detected by an RFID sensor. We defined detections as distinct and only counted them when they (1) occurred on different sensors or when (2) at least 10 seconds had elapsed (without detection on the same sensor) between two consecutive detections on the same sensor. This prevented the repeated detection of resting or dead animals.</p> <p><strong>block_ID: </strong>Categorical value indicating whether an observation was made within the first or second temporal experimental block (b1, b2). Each block corresponded to a period of approximately one lunar cycle (i.e., 28 days: experimental block b1: 21.07.2020 - 18.08.2020, experimental block b2: 15.09.2020 - 13.10.2020).</p> <p><strong>rep_ID: </strong>Categorical value indicating the replicate prey dummy exposures (r2, r3, r4, r5) that took place within each 28-day temporal experimental block: r2 and r3 took place successively within block b1; r4 and r5 took place successively within block b2. NAs identify periods during each experimental block where prey dummies had not yet been deployed or were in the process of being collected/re-deployed. </p> <p><strong>unit_ID: </strong>Categorical value indicating the identity of each of the 12 EcoUnits at the iDiv Ecotron experimental facility.</p> <p><strong>patch_ID: </strong>Categorical value indicating the identify of each of the four meadow patches within each EcoUnit. Patch identities correspond to their coordinates within the EcoUnit.</p> <p><strong>x: </strong>Continuous value indicating the X-coordinate position of an RFID sensor or prey dummy within the Ecotron unit with respect to the position of each EcoUnit’s control panel.</p> <p><strong>y: </strong>Continuous value indicating the Y-coordinate position of an RFID sensor or prey dummy within the Ecotron unit with respect to the position of each EcoUnit’s control panel. </p> <p><strong>day_night: </strong>Categorical value indicating whether an individual was detected during the day (treatment lights off) or during the night (treatment lights on). Night includes the periods of dawn and dusk where daylight was gradually (i.e. linearly) brightened or dimmed over the course of two hours before sunrise and sunset, respectively.</p> <p><strong>habitat: </strong>Categorical value indicating whether a tagged individual was detected within a meadow patch (Patch) or within the area of bare ground (Matrix) which separates individual patches.</p> <p><strong>tag: </strong>Categorical value indicating the unique serial number associated with an RFID-tagged individual. This column is used to estimate local densities (sum of unique tag IDs detected).</p> <p><strong>species: </strong>Categorical value indicating the scientific name of the species according to the taxonomy of the Global Biodiversity Information Facility (accessed via GBIF.org during 2020). Note that <em>Harpalus rufipes </em>(De Geer) is referred to in the database by its synonym <em>Pseudoophonus rufipes</em> (De Geer). Poecilus includes the species <em>Poecilus cupreus</em> and<em> Poecilus versicolor</em>. , <em>Harpalus affinis</em>, <em>Harpalus latus</em>) are pooled together at the genus level. </p> <p><strong>bodymass_mg: </strong>Continuous value indicating the live body mass of each tagged individual, excluding the added mass of the RFID tag.</p> <p><strong>detection: </strong>Integer with a fixed value of 1 representing the detection of a unique RFID tag. This column is used to estimate movement activity (sum of detections).</p> <p><strong>bite_count: </strong>Integer value indicating the number of bite marks recorded on an individual prey dummy during a 14-day exposure. Two independent observers scored the prey dummies by identifying and counting the bite marks left by carabid predators.</p> <p><strong>treatment_lux: </strong>Continuous value indicating the treatment of diffuse nighttime illuminance in Lux.</p>
Spatio-temporal, optogenetic control of gene expression in organoids
<p>Organoids derived from stem cells become increasingly important to study human development and to model disease. However, methods are needed to control and study spatio-temporal patterns of gene expression in organoids. To this aim, we combined optogenetics and gene perturbation technologies to activate or knock-down RNA of target genes, at single-cell resolution and in programmable spatio-temporal patterns. To illustrate the usefulness of our approach, we locally activated Sonic Hedgehog (<em>SHH</em>) signaling in an organoid model for human neurodevelopment. High-resolution spatial transcriptomic and single-cell analyses showed that this local induction was sufficient to generate stereotypically patterned organoids in three dimensions and revealed new insights into <em>SHH</em>’s contribution to gene regulation in neurodevelopment.</p> <p>With this study, we propose optogenetic perturbations in combination with spatial transcriptomics as a powerful technology to reprogram and study cell fates and tissue patterning in organoids.</p>
Data and code for: A quantitative model for spatio-temporal dynamics of root gravitropism
<p>This repository contains the experimental data presented in "A quantitative model for spatio-temporal dynamics of root gravitropism" and Python scripts for the presented root model.</p>
Niche expansion of capuchin monkeys to forest floor on guild-reduced islands increases interspecific spatio-temporal overlap
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Transformed crane data from: Balancing structural complexity with ecological insight in spatio-temporal species distribution models
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Data from: Toward spatio-temporal models to support national-scale forest carbon monitoring and reporting
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Long- and short-read metabarcoding technologies reveal similar spatio-temporal structures in fungal communities
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Spatio-temporal variation in diet among age and sex cohorts of a model generalist bird species, the Great Tit Parus major: new insights revealed by DNA metabarcoding
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Resources for: Spatio-temporal integrated Bayesian species distribution models reveal lack of broad relationships between traits and range shifts
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ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.