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Dataset results
123 results for “bottom-up”
Disease-specific antibody databases for bottom-up proteomics
<p>Heavy chains of antibody sequences were collected from the <a href="https://opig.stats.ox.ac.uk/webapps/oas/">OAS database</a>, and then digested into trypic peptides (enzym: tryptic, miscleavage: 2).</p> <p>Tryptic peptides that were exclusive to each disease and not available in public protein databases (e.g., UniProt and NCBI-RefSeq) were retained to form the final data files.</p> <p> </p> <p> </p>
Energy Consumption Reduction in Historic Urban Residential Sectors: A Case Study of Kyoto City Using Bottom-Up Modeling and Future Climate Scenarios
<p>This dataset is a detailed simulation result of 21 scenarios in the paper. The results include:</p> <ol> <li>Annual daily energy consumption data divided by energy source and residential type.</li> <li>Photovoltaic power generation data, direct photovoltaic use, battery use, and photovoltaic power generation consumed by apartment houses and Kyomachiya through P2C systems. </li> <li>Annual daily net energy consumption data divided by energy source and residential type.</li> </ol>
Vascular access and clinical competency: Which elements matter? The development of three bottom-up and evidence-grounded self-assessment tools
<p>Dataset from Rigo C, Grazioli M, Caravella G, Ursino F, Zerla P, Magon A, Dellafiore F, Caruso R. Vascular access and clinical competency: Which elements matter? The development of three bottom-up and evidence-grounded self-assessment tools. J Vasc Access. 2021 Jun 18:11297298211026447. doi: 10.1177/11297298211026447. Epub ahead of print. PMID: 34148385.</p> <p>Abstract</p> <p><strong>Background: </strong>Assessing competency in the speciality of vascular access is still limited, and few valid and reliable tools are available. Therefore, this study aimed to develop and validate three different tools for assessing competency in managing the care of short peripheral cannulas (SPCs), midlines, peripherally inserted central catheters (PICCs), centrally inserted central catheters (CICCs), and arterial catheters (ACs) (tool one), placing SPCs (tool two), placing PICCs and midlines (tool three).</p> <p><strong>Methods: </strong>A two-phase and multi-method design was adopted. Phase one was implemented to develop the initial pool of items for each tool, starting from a literature overview. Panel discussions were adopted for developing the items. In phase two, the developed items were tested for content and face validity, involving a panel of 10 experts. Once obtained adequate content validity, a cross-sectional data collection was implemented to enroll three samples of healthcare workers who had to assess their competency through the developed tools. Dimensionality was assessed by performing a principal component analysis (PCA) and assessing internal consistency (Cronbach's α).</p> <p><strong>Results: </strong>Tool one had 26 items, and the dimensionality was given by placement, risk assessment, procedure conformity and traceability, and patient education to self-care. Tool two had 35 items; its principal components were: risk evaluation, identification, clinical assessment and orientation to self-care, placement, and procedure registration shaped the competency of placing SPCs. Tool three had 31 items; its principal components were: risk assessment, placement, conformity to standards and procedure traceability, education, and orientation to self-care were the essential elements for adequately placing midlines and PICCs. Cronbach's α values ranged between 0.806 and 0.959.</p> <p><strong>Conclusions: </strong>The three developed tools reflected the core elements of competency in each application area, representing an initial framework that could be useful in future research and educational projects. Cross-national investigations are required to corroborate the described results.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.