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FIGURE 3 in Tracking the evolutionary pathways among Brazilian Lebiasina species (Teleostei: Lebiasinidae): a chromosomal and genomic comparative investigation
FIGURE 3 | Metaphase chromosomes of Lebiasina minuta hybridized with microsatellite probes (A, B and C) and telomeric probes (D), using red signals. Scale bar = 5 µm.
FIGURE 2 in Tracking the evolutionary pathways among Brazilian Lebiasina species (Teleostei: Lebiasinidae): a chromosomal and genomic comparative investigation
FIGURE 2 | Male and female karyotypes of Lebiasina minuta after A. Giemsa staining, B. C-banding, and C. "double-FISH" with 5S (red) and 18S (green) rDNA probes. Scale bar = 5 µm.
FIGURE 1 in Tracking the evolutionary pathways among Brazilian Lebiasina species (Teleostei: Lebiasinidae): a chromosomal and genomic comparative investigation
FIGURE 1 | Distribution of Lebiasina species with available cytogenetic data, highlighting the Brazilian state of Pará (orange) and Ecuadorian (purple) territories A. 1. L. bimaculata, 2. L. melanoguttata (Sassi et al., 2019), and 3. L. minuta (this study). B. Highlights the position of A in South America, and C. indicates that, although close, species 2 and 3 does not share an overlapped distribution.
FIGURE 4 in Chromosome analysis in Saccodon wagneri (Characiformes) and insights into the karyotype evolution of Parodontidae
FIGURE 4 | Saccodon wagneri metaphase plates after A. Double FISH with 5S rDNA (green-thin arrows) and 18S rDNA (red-thick arrows) probes; B. FISH using telomeric probes showing positive signals in the terminal positions of all chromosomes.
FIGURE 3 in Chromosome analysis in Saccodon wagneri (Characiformes) and insights into the karyotype evolution of Parodontidae
FIGURE 3 | Saccodon wagneri C-banded metaphases. A. Female; B. Male. The arrows indicate the sex chromosomes.
FIGURE 2 in Chromosome analysis in Saccodon wagneri (Characiformes) and insights into the karyotype evolution of Parodontidae
FIGURE 2 | Saccodon wagneri Giemsa karyotypes. A. Female; B. Male. Sex chromosomes are indicated. The NOR-carrying chromosomes, after silver staining, are boxed.
GenVarLoader Tutorial: Geuvadis Chromosome 22
<p>Chromosome 22 genotypes and BigWigs for the Geuvadis subset of the 1000 Genomes Project. The 451 BigWigs come from recount3 using GRCh38 and GENCODE v29, with samples deduplicated to one per individual by choosing the samples with highest library size. The genotypes are 451 individuals from the 100 Genomes that are represented in the Geuvadis study.</p>
Similarity of ORF genes grouped by chromosome without chromosome arm correction
Open the record for dataset details and reuse information.
Frequency maps of Y-chromosomal haplogroups in Finland - out of all samples
<p>Y-chromosomal regional enrichment maps for all haplogroups with at least 1% frequency in Finland out of all samples. A star (*) within the map and gray color in the forest plot indicates the frequency is inferred by combining samples from geographically closest regions due to low coverage of samples in the region.</p>
Data from: A de novo chromosome-level genome assembly of Coregonus sp. "Balchen": one representative of the Swiss Alpine whitefish radiation
<p>Salmonids are of particular interest to evolutionary biologists due to their incredible diversity of life-history strategies and the speed at which many salmonid species have diversified. In Switzerland alone, over 30 species of Alpine whitefish from the subfamily Coregoninae have evolved since the last glacial maximum, with species exhibiting a diverse range of morphological and behavioural phenotypes. This, combined with the whole genome duplication which occurred in the ancestor of all salmonids, makes the Alpine whitefish radiation a particularly interesting system in which to study the genetic basis of adaptation and speciation and the impacts of ploidy changes and subsequent rediploidization on genome evolution. Although well curated genome assemblies exist for many species within Salmonidae, genomic resources for the subfamily Coregoninae are lacking. To assemble a whitefish reference genome, we carried out PacBio sequencing from one wild-caught <i>Coregonus sp. "Balchen" </i>from Lake Thun to ~90x coverage. PacBio reads were assembled independently using three different assemblers, Falcon, Canu and wtdbg2 and subsequently scaffolded with additional Hi-C data. All three assemblies were highly contiguous, had strong synteny to a previously published <i>Coregonus</i>linkage map, and when mapping additional short-read data to each of the assemblies, coverage was fairly even across most chromosome-scale scaffolds. Here, we present the first <i>de novo</i>genome assembly for the Salmonid subfamily Coregoninae. The final 2.2 Gb wtdbg2 assembly included 40 scaffolds, an N50 of 51.9 Mb, and was 93.3% complete for BUSCOs. The assembly consisted of ~52% TEs and contained 44,525 genes.</p>
FIGURE 20 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 20. Morphological details of male Mecopoda angusta (CH3697). A pronotum dorsal view, B pronotum, lateral view, C cercus. Scale 1 mm.
FIGURE 23 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 23. Mecopoda paucidens sp. nov.: habitus (A, D), mirror area of right tegmen (B, E), stridulatory file of left tegmen (C, F).—A–C: male from Gunung Lawu, Java; D–F: holotype male from Timor. The thin lines mark the measuring tracks (A–E) or the borders between bulks of five teeth (C, F).
FIGURE 17 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 17. Male subgenital plate, ventral view, in Mecopoda species. A M angusta (CH3697), B M. dilatata, type, C M. divergens, NHW.
FIGURE 11 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 11. Stridulatory files in Mecopoda and Eumecopoda. A M. niponensis niponensis, lectotype, B M. niponensis vietnamica subsp. nov., holotype, C M. himalaya, CH3737 (Malaysia), D M. himalaya (=M. ampla malayensis, holotype), E M. himalaya (=M. ampla javaensis, holotype), F M. himalaya (=M. fallax aequatorialis, holotype), G M. macassariensis, holotype, H M. fallax, Thailand, I M. stridulata stridulata, CRTmeceloM02 (Borneo), J M. stridulata stridulata, holotype, K M. paucidens sp. nov., (Java), L M. sismondoi sp. nov., holotype, M M. javana, neotype, N M. javana, Sri Lanka, O M. mahindai sp. nov., holotype, P M. angusta, CH3697, Q M. dilatata, ORT 2005/413 (Borneo), R E. cyrtoscelis zhantievi subsp. nov., holotype, S M. prominens, holotype, T M. ampla ampla, holotype. Scale 1 mm.
FIGURE 7 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 7. Oscillograms of the calling songs of species of the Mecopoda niponensis subgroup. Details (1 s sections). In M. himalaya synchronous registration of movement of left tegmen and sound (upper line: upward deflection indicating opening, downward closing; lower line: sound).
FIGURE 10 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 10. Oscillograms of the calling songs of Mecopoda angusta and Eumecopoda cyrtoscelis. Overview (12 s sections) and details (1 s sections). Figures of Eumecopoda c. cyrtoscelis based on figures in Helfert & Sänger (2007), all sound recordings the figures are made from seem to be lost (Römer, email 2019/10/23).
FIGURE 5 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 5. Male tegmina in selected Mecopoda species. A M. niponensis niponensis, lectotype, B M. macassariensis, lectotype, C M. javana, neotype, D–H: Species from Borneo: D M. s. stridulata, CRTmeceloM02, E M. himalaya, CRTmeceloM01, F M. himalaya, OTRmeceloS11, G M. himalaya (from Gorochov 2020: fallax aequatorialis syn. nov.), H M. stridulata stridulata (from Gorochov 2020). Right tegmen (A, B, E); left tegmen in mirror-inverted position (C–D, F–H). Scale 10 mm (for A–C only).
FIGURE 14 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 14. Power spectra of the calling songs of Mecopoda species. In A, red line trill, green line chirp; in B–D, grey area opening and closing hemisyllable together, blue line opening hemisyllable only, yellow line closing hemisyllable only (for Eumecopoda opening/closing assumed).
FIGURE 4 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 4. Apical area of male cerci of specimens from Thailand. A–D: M. fallax (A–B 3254538 NamNao left and right cercus; C 3261689 Khao Lak; D 3261441 Sok); E: M. himalaya (3254539 Monkrating); F–I: confracta subgroup (F 3261445 Chiang Mai in town; G 3261455 do. near Huei Khaeo Waterfall, H 3261456 do. Doi Suthep in mountain; I 3261452 Phrao district; J 3261444 Khao Yai); K–N: unknown subgroup (K 3261447 Khao Chong; L 3261449 Nan not voucher for song; M–N 3261442 Khao Sok right and left cercus).
FIGURE 3 in Bioacoustics and systematics of Mecopoda (and related forms) from South East Asia and adjacent areas (Orthoptera, Tettigonioidea, Mecopodinae) including some chromosome data
FIGURE 3. Apical area of male cerci of specimens from Java (A–G, J–K) and Borneo (H–I, M–P). A–D: M. javana from Palabuan Ratu (A 3261437 neotype; B 3261432; C 3261435; D 3261436); E–I: M. himalaya group (E 3261440 Gunung Salak; F 3261448 Bogor; G, 3254643 P. Ratu; H, 3261454 Sarawak near Batu Niah, I 3261461 Nanga Ngungun); J: unknown group from Palabuan Ratu forest (3261434 large species); K–L: M. paucidens (K 3261458 Gunung Lawu, L type from Timor); M: M. himalaya from Sabah (CRTmeceloM01); N–P: M. s. stridulata from Sabah (N CRTmeceloM02 from Poring; O OTRmeceloS15 and P OTRmeceloS16 from Matunggong).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.