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145 results for “cryptic lineage”
Figure 4 from: Pieńkowska JR, Manganelli G, Giusti F, Hallgass A, Lesicki A (2018) Exploring Monacha cantiana (Montagu, 1803) phylogeography: cryptic lineages and new insights into the origin of the English populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 765: 1-41. https://doi.org/10.3897/zookeys.765.24386
Figure 4 Bayesian 50% majority-rule consensus tree obtained from analysis of the combined data set of COI, 16SrDNA, and H3 sequences (see: Table 2). Posterior probabilities (left) and bootstrap support above 50% from Maximum Likelihood analysis (right) are marked at the nodes. Bootstrap analysis was run with 1000 replicates (Felsenstein 1985). The tree was rooted with M. cartusiana combined sequences KM247376, KM247391 and MG209072.
Figures 31-35 from: Pieńkowska JR, Manganelli G, Giusti F, Hallgass A, Lesicki A (2018) Exploring Monacha cantiana (Montagu, 1803) phylogeography: cryptic lineages and new insights into the origin of the English populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 765: 1-41. https://doi.org/10.3897/zookeys.765.24386
Figures 31-35 Genitalia (proximal parts excluded) (31), internal structure of distal genitalia (32–32) and transverse sections of medial epiphallus (34) and penial papilla (35) of Monacha cantiana. CAN-2 from Rezzato (ex. 1: 31–32, 34–35; ex. 2: 33) (FGC 42976).
Figure 3 from: Pieńkowska JR, Manganelli G, Giusti F, Hallgass A, Lesicki A (2018) Exploring Monacha cantiana (Montagu, 1803) phylogeography: cryptic lineages and new insights into the origin of the English populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 765: 1-41. https://doi.org/10.3897/zookeys.765.24386
Figure 3 Maximum Likelihood (ML) tree of combined COI and 16SrDNA haplotypes of Monacha cantiana group (see: Table 2). Bootstrap support above 50% from maximum likelihood analysis is marked at the nodes. Bootstrap analysis was run with 1000 replicates (Felsenstein 1985). The tree was rooted with M. cartusiana combined sequences obtained from GenBank: KM247376 and KM247391.
Figures 20-25 from: Pieńkowska JR, Manganelli G, Giusti F, Hallgass A, Lesicki A (2018) Exploring Monacha cantiana (Montagu, 1803) phylogeography: cryptic lineages and new insights into the origin of the English populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 765: 1-41. https://doi.org/10.3897/zookeys.765.24386
Figures 20-25 Genitalia (proximal parts excluded) (20, 22), internal structure of distal genitalia (21) and transverse sections of medial epiphallus (23) and penial papilla (24–25) of Monacha cantiana. CAN-1 from Barrow near Barnsley (FGC 40329) (20, 22–23, 25) and East Acton near London (DCBC) (21, 24).
Figures 17-18 from: Pieńkowska JR, Manganelli G, Giusti F, Hallgass A, Lesicki A (2018) Exploring Monacha cantiana (Montagu, 1803) phylogeography: cryptic lineages and new insights into the origin of the English populations (Eupulmonata, Stylommatophora, Hygromiidae). ZooKeys 765: 1-41. https://doi.org/10.3897/zookeys.765.24386
Figures 17-18 Principal component analysis (PCA) and Redundancy analysis (RDA) with clade constraint applied to the original shell matrix (17) and Z-matrix (shape-related)(18). Ellipses show the 95% confidence intervals associated with each group.
Figure 1 in Molecular data reveal cryptic lineages within the northeastern Atlantic and Mediterranean small mussel drills of the Ocinebrina edwardsii complex (Mollusca: Gastropoda: Muricidae)
Figure 1. Location map of the sampling sites. Numbers of the sites as in Table 1.
Figure 1 from: Wesener T, Voigtländer K, Decker P, Oeyen JF, Spelda J, Lindner N (2015) First results of the German Barcode of Life (GBOL) – Myriapoda project: Cryptic lineages in German Stenotaenia linearis (Koch, 1835) (Chilopoda, Geophilomorpha). In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 15-29. https://doi.org/10.3897/zookeys.510.8852
Figure 1 - Maximum likelihood tree, 1000 bootstrap replicates. L1–L3 = Stenotaenia linearis lineages 1–3; NRW = North Rhine-Westphalia; Baden-W = Baden-Württemberg. Stenotaenia 'sorrentina' comes from GenBank and might refer to Stenotaenia forficularis. For exact locality data, see Table 1.
Figure 3 from: Wesener T, Voigtländer K, Decker P, Oeyen JF, Spelda J, Lindner N (2015) First results of the German Barcode of Life (GBOL) – Myriapoda project: Cryptic lineages in German Stenotaenia linearis (Koch, 1835) (Chilopoda, Geophilomorpha). In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 15-29. https://doi.org/10.3897/zookeys.510.8852
Figure 3 - Map of Stenotaenia linearis samples studied during GBOL (large dots), as well as other Stenotaenia linearis records from Edaphobase, the ZSM and ZFMK collection (small dots, status 10.2014). Yellow = Stenotaenia linearis L1; Blue = Stenotaenia linearis L2; Green = Stenotaenia linearis L3. (A) Stenotaenia linearis in the field, photo: J. Spelda, specimen from Stuttgart-Hofen, Zuckerberg.
Figure 2 from: Wesener T, Voigtländer K, Decker P, Oeyen JF, Spelda J, Lindner N (2015) First results of the German Barcode of Life (GBOL) – Myriapoda project: Cryptic lineages in German Stenotaenia linearis (Koch, 1835) (Chilopoda, Geophilomorpha). In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 15-29. https://doi.org/10.3897/zookeys.510.8852
Figure 2 - Frequency distribution of pairwise intraspecific (blue) and interspecific (red) distances. Blue circle = intraspecific distances of Geophilus alpinus and among Stenotaenia linearis L3; Red circle = interspecific distances and distances between Stenotaenia linearis lineages. Basic table see Suppl. material 1.
Data from: Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia
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A cell-type specific surveillance complex represses cryptic promoters during differentiation in an adult stem cell lineage [CAGE]
GEO Series GSE301637. Drosophila melanogaster. 4 samples. Type: Expression profiling by high throughput sequencing.
A cell-type specific surveillance complex represses cryptic promoters during differentiation in an adult stem cell lineage [RNA-seq]
GEO Series GSE301641. Drosophila melanogaster. 18 samples. Type: Expression profiling by high throughput sequencing.
A cell-type specific surveillance complex represses cryptic promoters during differentiation in an adult stem cell lineage [3'-seq]
GEO Series GSE301635. Drosophila melanogaster. 4 samples. Type: Other.
Cryptic endogenous retrovirus subfamilies in the primate lineage
GEO Series GSE245662. Homo sapiens. 12 samples. Type: Other.
Figure 22 from: Rodrigues HR, Rivera J, Reid N, Svenson GJ (2017) An elusive Neotropical giant, Hondurantemna chespiritoi gen. n. & sp. n. (Antemninae, Mantidae): a new lineage of mantises exhibiting an ontogenetic change in cryptic strategy. ZooKeys 680: 73-104. https://doi.org/10.3897/zookeys.680.11162
Figure 22 - Lateral habitus of the egg case of Antemna rapax. Scale bar = 10mm.
Figure 19 from: Rodrigues HR, Rivera J, Reid N, Svenson GJ (2017) An elusive Neotropical giant, Hondurantemna chespiritoi gen. n. & sp. n. (Antemninae, Mantidae): a new lineage of mantises exhibiting an ontogenetic change in cryptic strategy. ZooKeys 680: 73-104. https://doi.org/10.3897/zookeys.680.11162
Figure 19 - Posterior view of the forefemur of a male Antemna rapax. Scale bar = 5mm.
Data from: Origin of a cryptic lineage in a threatened reptile through isolation and historical hybridization
Identifying phylogenetically distinct lineages and understanding the evolutionary processes by which they have arisen are important goals of phylogeography. This information can also help define conservation units in endangered species. Such analyses are being transformed by the availability of genomic-scale data sets and novel analytical approaches for statistically comparing different historical scenarios as causes of phylogeographic patterns. Here, we use genomic-scale restriction-site-associated DNA sequencing (RADseq) data to test for distinct lineages in the endangered Eastern Massasauga Rattlesnake (Sistrurus catenatus). We then use coalescent-based modeling techniques to identify the evolutionary mechanisms responsible for the origin of the lineages in this species. We find equivocal evidence for distinct phylogenetic lineages within S. catenatus east of the Mississippi River, but strong support for a previously unrecognized lineage on the western edge of the range of this snake, represented by populations from Iowa, USA. Snakes from these populations show patterns of genetic admixture with a nearby non-threatened sister species (Sistrurus tergeminus). Tests of historical demographic models support the hypothesis that the genetic distinctiveness of Iowa snakes is due to a combination of isolation and historical introgression between S. catenatus and S. tergeminus. Our work provides an example of how model-based analysis of genomic-scale data can help identify conservation units in rare species.
Data from: Origin of a cryptic lineage in a threatened reptile through isolation and historical hybridization
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A cell-type specific surveillance complex represses cryptic promoters during differentiation in an adult stem cell lineage [ATAC-seq]
GEO Series GSE301549. Drosophila melanogaster. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A cell-type specific surveillance complex represses cryptic promoters during differentiation in an adult stem cell lineage [ChIP-seq]
GEO Series GSE301639. Drosophila melanogaster. 26 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
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OpenNeuro
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