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155
datasets available to search
ShareScore release 0.9.0
Dataset results
155 results for “interaction scale”
Data from: Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis
Open the record for dataset details and reuse information.
Data from: Differential female sociality is linked with the fine-scale structure of sexual interactions in replicate groups of red junglefowl, Gallus gallus
Open the record for dataset details and reuse information.
Mapping cell structure across scales by fusing protein images and interactions
GEO Series GSE171553. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Large-Scale CRISPR Screening in Primary Human 3D Gastric Organoids Enables Comprehensive Dissection of Gene-Drug Interactions
GEO Series GSE280506. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Hyperosmotic stress induces a large-scale rewiring of 3D chromatin interactions [Cut & Tag]
GEO Series GSE310047. Homo sapiens. 16 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
DeepC: Predicting chromatin interactions using megabase scaled deep neural networks and transfer learning (NG Capture-C)
GEO Series GSE137435. Homo sapiens. 4 samples. Type: Other.
DeepC: Predicting chromatin interactions using megabase scaled deep neural networks and transfer learning (Tiled-C)
GEO Series GSE137436. Homo sapiens. 2 samples. Type: Other.
Atlantic salmon scale explants in bacteria-host interaction studies: in vitro challenge model.
GEO Series GSE292873. Salmo salar. 86 samples. Type: Expression profiling by array.
Inter- and intra- chromosomal interactions change on a global scale according to the metabolic regime employed by Saccharomyces cerevisiae
GEO Series GSE33074. Saccharomyces cerevisiae. 2 samples. Type: Other.
Large-Scale CRISPR Screening in Primary Human 3D Gastric Organoids Enables Comprehensive Dissection of Gene-Drug Interactions [RNA-seq]
GEO Series GSE280257. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
Genome-scale chromatin interaction dynamic measurements for key components of the RNA Pol II general transcription machinery [ChIP-seq]
GEO Series GSE235000. Saccharomyces cerevisiae. 95 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF
GEO Series GSE181694. Mus musculus. 25 samples. Type: Other.
A Genome-Scale TF-DNA Interaction Network for Transcriptional Regulation of Arabidopsis Primary and Specialized Metabolism
GEO Series GSE137623. Arabidopsis thaliana. 64 samples. Type: Expression profiling by high throughput sequencing.
Hyperosmotic stress induces a large-scale rewiring of 3D chromatin interactions [Hi-C]
GEO Series GSE310051. Homo sapiens. 32 samples. Type: Other.
Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes
GEO Series GSE56869. Homo sapiens. 8 samples. Type: Other.
Large-scale analyses provide no evidence for gene-gene interactions influencing type 2 diabetes risk
<p>Summary statistics for "Large-scale analyses provide no evidence for gene-gene interactions influencing type 2 diabetes risk"</p> <p> </p>
Using Galaxy to Perform Large-Scale Interactive Data Analyses - An update
<p>Datasets and workflows supporting the protocols described in the article "Using Galaxy to Perform Large‐Scale Interactive Data Analyses - An update".</p>
Data from: Cophylogenetic signal is detectable in pollination interactions across ecological scales
That evolutionary history can influence the way that species interact is a basic tenet of evolutionary ecology. However, when the role of evolution in determining ecological interactions is investigated, focus typically centers on just one side of the interaction. A cophylogenetic signal, the congruence of evolutionary history across both sides of an ecological interaction, extends these previous explorations and provides a more complete picture of how evolutionary patterns influence the way species interact. To date, cophylogenetic signal has most typically been studied in interactions that occur between fine taxonomic clades that show high intimacy. In this study, we took an alternative approach and made an exhaustive assessment of cophylogeny in pollination interactions. To do so, we assessed the strength of cophylogenetic signal at four distinct scales of pollination interaction: (1) across plant–pollinator associations globally, (2) in local pollination communities, (3) within the modular structure of those communities, and (4) in individual modules. We did so using a globally distributed dataset comprised of 54 pollination networks, over 4000 species, and over 12,000 interactions. Within these data, we detected cophylogenetic signal at all four scales. Cophylogenetic signal was found at the level of plant–pollinator interactions on a global scale and in the majority of pollination communities. At the scale defined by the modular structure within those communities, however, we observed a much weaker cophylogenetic signal. Cophylogenetic signal was detectable in a significant proportion of individual modules and most typically when within-module phylogenetic diversity was low. In sum, the detection of cophylogenetic signal in pollination interactions across scales provides a new dimension to the story of how past evolution shapes extant pollinator–angiosperm interactions.
Dataset of "Pore-scale simulation of the impact of CO2-Water-Mineral Interaction on Rock Permeability and Mechanical Properties"
<p>This dataset supports the research study 'Pore-scale simulation of the impact of CO2-Water-Mineral Interaction on Rock Permeability and Mechanical Properties' by B. Yang, T. Xu, Z. Jiang, and H. Zhu.</p>
Figure 2 from: Piry S, Berthier K, Streiff R, Cros-Arteil S, Foucart A, Tatin L, Bröder L, Hochkirch A, Chapuis M-P (2018) Fine-scale interactions between habitat quality and genetic variation suggest an impact of grazing on the critically endangered Crau Plain grasshopper (Pamphagidae: Prionotropis rhodanica). Journal of Orthoptera Research 27(1): 61-73. https://doi.org/10.3897/jor.27.15036
Figure 2 Adult of Prionotropis rhodanica.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.