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135 results for “microsatellite marker”
Data from: Transcriptome-wide mining, characterization, and development of microsatellite markers in Lychnis kiusiana (Caryophyllaceae)
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Data from: Limited usefulness of microsatellite markers from the malaria vector Anopheles gambiae when applied to the closely related species Anopheles melas
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Multi-omic colon organoid analysis highlight MSH4 as a marker of Lynch syndrome and microsatellite instability [methylation array]
GEO Series GSE210018. Homo sapiens. 58 samples. Type: Methylation profiling by array; Methylation profiling by genome tiling array.
Data from: A single multiplex of twelve microsatellite markers for the simultaneous study of the brown hare (Lepus europaeus) and the mountain hare (Lepus timidus)
The management of hunted species is challenging, as it must conciliate the conservation of species and their sustainable exploitation. Non-genetic tools are widely used in this context but they may present limitations notably when species can hybridize or when large-scale spatial monitoring is required to establish optimal management actions. This is why genetic tools have been more and more integrated in wildlife management practices. However, the markers proposed are often amplified in small multiplexes when larger ones could allow to better cope with the small quantities of DNA obtained with non-invasive sampling methods. Here, we propose a unique multiplex of 12 autosomal microsatellite markers for the study of two hare species that exist in sympatry in some areas in Europe and are hunted notably in France: the brown hare Lepus europaeus and the mountain hare L. timidus. We tested 17 markers previously used in these two species or other lagomorph species, from which 12 were included in this single multiplex. Diversity was between 4 and 30 alleles per locus totalling 126 alleles and we showed that these markers possess appropriate genetic resolution for individual and species identification for the populations under study. This multiplex panel represents the largest number of microsatellites amplified in one reaction proposed for these two hare species and provides a cost-effective and valuable tool for further hybridization studies and the management of hares.
Data from: Evaluation of genetic diversity and population structure of five Chinese indigenous donkey breeds using microsatellite markers
China had the largest population of raising donkeys in the world, however the number of Chinese indigenous donkey decreased dramatically due to the increase of agriculture mechanization in the last century. The species has still been important in China because of its edible and medical value, therefore the survey on its genetic diversity in China is necessary for its conservation and utilization. In this study, 15 microsatellite markers were used to evaluate genetic diversity and population structure of five Chinese indigenous donkey breeds. The mean values of expected heterozygosity, allelic richness, and total number of alleles for all the tested Chinese donkeys were 0.70, 6.04, and 6.28 respectively, suggesting that the genetic diversity of Chinese indigenous donkeys is rich. The Bayesian analysis and principal component analysis plot yielded the same clustering result, which revealed that Guanzhong donkey was the most differentiated breed in all detected samples, and Jinnan (JN) and Guangling (GL) were genetically closed together. Additionally, our results indicated that the heterozygote deficit was severe in two Chinese indigenous donkey breeds (GL and JN), and it warned us that animal conservation activities on this species should be considered carefully in near future.
T a b l e 7 in Molecular Characterization Of Lates Niloticus (Perciformes, Latidae) Populations From Three Nigerian Waterbodies Using Random Amplified Polymorphic Dna And Microsatellite Markers
T a b l e 7. Conformity to Hardy-Weinberg equilibrium
Figure 1 from: Liu L, Zhang Y, Hu X, Lü Z, Liu B, Jiang LH, Gong L (2019) Multiple paternity assessed in the cuttlefish Sepiella japonica (Mollusca, Cephalopoda) using microsatellite markers. ZooKeys 880: 33-42. https://doi.org/10.3897/zookeys.880.33569
Figure 1 S. japonica mating in the head-to-head position.
Parentage Assignment in Brown trout strains (Salmo trutta) and their hybrids using microsatellite markers
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Data from: Development of nuclear microsatellite markers for the Japanese conifers Tsuga diversifolia and T. sieboldii (Pinaceae)
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Data from: A single multiplex of twelve microsatellite markers for the simultaneous study of the brown hare (Lepus europaeus) and the mountain hare (Lepus timidus)
Open the record for dataset details and reuse information.
Data from: Evaluation of genetic diversity and population structure of five Chinese indigenous donkey breeds using microsatellite markers
Open the record for dataset details and reuse information.
Multi-omic colon organoid analysis highlight MSH4 as a marker of Lynch syndrome and microsatellite instability [RNA-sequencing]
GEO Series GSE211221. Homo sapiens. 16 samples. Type: Expression profiling by high throughput sequencing.
Microsatellite markers datat of Cedrus brevifolia in Cyprus
<p>The file "Data fine-scale structure of Cedrus bevifolia .xlsx" contains the microsatellites and geographical data used in the study " Significant patterns of fine-scale spatial genetic structure in a narrow endemic wind-dispersed tree species, <em>Cedrus brevifolia</em> Henry.", by Eliades N-G H, Fady B, Gailing O, Leinemann L, Finkeldey R, published in ???.</p>
Microsatellite markers data of Cedrus brevifolia in Cyprus (natural and plantation stands)
<p>The file "RawData_Eliades et al. 2019_Biodiversity and Conservation.xlsx" contains the microsatellites data used in the study:</p> <p>"An approach to genetic resources conservation of peripheral isolated plant populations: the case of the island narrow endemic species Cedrus brevifolia Henry.", by Eliade et al. (2019), published in Biodiversity and Conservation</p>
Multi-omic colon organoid analysis highlight MSH4 as a marker of Lynch syndrome and microsatellite instability
GEO Series GSE211222. Homo sapiens. 74 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by array; Methylation profiling by genome tiling array.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.