Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
480
datasets available to search
ShareScore release 0.9.0
Dataset results
480 results for “mirrors”
GTDB r220 Mash Database (UNOFFICIAL MIRROR)
<p><strong>This is an UNOFFICIAL host for the GTDB mash sketch based on GTDB r220</strong></p> <p>Intended use of this file is to include in the VEBA database for quicker GTDB-Tk analysis. </p> <p>Created by running the following command using <strong>GTDB-Tk v2.4.0 </strong>on the S1 sample from <a href="../record/7946802">Zenodo:7946802</a>: </p> <pre><code>gtdbtk classify_wf --genome_dir veba_output/binning/prokaryotic/S1/output/genomes/ --out_dir test_output -x fa --cpus 1 --mash_db ./gtdb_r220.msh</code><br><br></pre> <p><strong>Source Files: </strong></p> <p><a href="https://data.ace.uq.edu.au/public/gtdb/data/releases/release220/220.0/auxillary_files/gtdbtk_package/full_package/gtdbtk_r220_data.tar.gz">gtdbtk_r220_data.tar.gz</a></p> <pre><a href="https://data.ace.uq.edu.au/public/gtdb/data/releases/release220/220.0/RELEASE_NOTES.txt">RELEASE_NOTES.txt</a><br><br></pre> <blockquote> <pre>Release 220.0: -------------- GTDB release R09-RS220 comprises 596,859 genomes organised into 113,104 species clusters. Additional statistics for this release are available on the GTDB Statistics page. Release notes: -------------- - Average nucleotide identity (ANI) between genomes is now calculated using skani (Shaw et al., Nat Methods, 2023) instead of FastANI (Jain et al, Nat Commun, 2018). skani provides a substantial reduction in computational requirements while producing similar ANI values and more accurate alignment fraction (AF) values. - CheckM v2 information is included on the website and in the metadata files, noting at this stage that these data were not used for the QC step in release 220. - Post-curation cycle, we identified updated spelling for 15 taxon names: p__Calescibacterota (updated name: Calescibacteriota) c__Brachyspirae (updated name: Brachyspiria) c__Leptospirae (updated name: Leptospiria) o__Ammonifexales (updated name: Ammonificales) o__Exiguobacterales (updated name: Exiguobacteriales) o__Hydrogenedentiales (updated name: Hydrogenedentales) o__Phormidesmiales (updated name: Phormidesmidales) f__Arcanobacteraceae (updated name: Arcanibacteraceae) f__Acetonemaceae (updated name: Acetonemataceae) f__Ethanoligenenaceae (updated name: Ethanoligenentaceae) f__Exiguobacteraceae (updated name: Exiguobacteriaceae) f__Geitlerinemaceae (updated name: Geitlerinemataceae) f__Koribacteraceae (updated name: Korobacteraceae) f__Phormidesmiaceae (updated name: Phormidesmidaceae) f__Porisulfidaceae (updated name: Poriferisulfidaceae) Note that the LPSN linkouts point to the correct updated names. We encourage users to use the updated names as these will appear in the next release. - Post-curation cycle, we discovered that two provisionally named families, Nitrincolaceae and Denitrovibrionaceae have been validly named under the ICNP as Balneatricaceae and Geovibrionaceae, respectively. We encourage users to use the validly published names as these will appear in the next release. - We thank Jan Mares for his assistance in curating the class Cyanobacteriia and Brian Kemish for providing IT support to the project.</pre> </blockquote> <p> </p> <p><strong>If you have found this useful, please cite the original publications: </strong></p> <ul> <li>Chaumeil PA, et al. 2022. <a href="https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/btac672/6758240?utm_source=advanceaccess&utm_campaign=bioinformatics&utm_medium=email">GTDB-Tk v2: memory friendly classification with the Genome Taxonomy Database</a>. <em>Bioinformatics</em>, btac672.</li> <li>Parks, D.H., et al. (2021). <a href="https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkab776/6370255">GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy</a>. <em>Nucleic Acids Research</em>, <strong>50</strong>: D785–D794.</li> </ul>
Expand your body when you look at yourself: The role of the posture in a mirror exposure task
<p>This dataset contains self-report measures of 68 women with high body dissatisfaction that participated in a study aimed at analyzing the effect of adopting an expansive (vs. contractive) posture before a mirror exposure task on body-related emotions and cognitions.</p>
Data to "Distinguishing mirror from glass: A 'big data' approach to material perception"
<p>This record contains images, models, and analysis scripts written in MATLAB.</p> <p>Tamura, Prokott, Fleming. "Distinguishing mirror from glass: A ‘big data’ approach to material perception." in preparation.</p>
Ilium Mirror
Open the record for dataset details and reuse information.
Part of Vert 10 Mirror
Open the record for dataset details and reuse information.
Part of Vert 9 Mirror
Open the record for dataset details and reuse information.
Dataset for: Gülmüs M. et al. "Photoluminescence modal splitting via strong coupling in hybrid Au/WS2/GaP nanoparticle-on-mirror cavities"
Open the record for dataset details and reuse information.
Mirror of GISS temp
<p>https://data.giss.nasa.gov/pub/gistemp/</p>
Data from: Does trait variation within broadly distributed species mirror patterns across species? A case study in Puerto Rico
Although populations are phenotypically diverse, the majority of trait-based studies have focused on examining differences among species. The justification for this broadly applied approach is based on the assumption that differences among species are always greater than within species. This is likely true for local communities, but species are often broadly distributed across a wide range of environments and patterns of intraspecific variation might surpass differences among species. Therefore, an appropriate interpretation of the functional diversity requires an assessment of patterns of trait variation across different ecological scales. In this study, we examine and characterize patterns of leaf trait variation for species that are broadly distributed along an elevational gradient. We focus on seven leaf traits that represent a main axis of functional differentiation in plants reflecting the balance between photosynthetic efficiency, display, and stomatal conductance. We evaluated patterns of trait variance across ecological scales (elevation, species, populations, and individuals) and examined trait covariance at both within species and across species levels, along the elevation gradient. Our results show three key patterns: (1) intraspecific leaf trait variation for broadly distributed species is comparable to the inter-specific trait variation, (2) the trait variance structure is highly variable across species and (3) trait coordination between pairs of leaf traits is evident across-species along the gradient, but not always within species. Combined, our results show that trait coordination and covariance are highly idiosyncratic across broadly distributed and co-occurring species, indicating that species may achieve similar functional roles even when exhibiting different phenotypes. This result challenges the traditional paradigm of functional ecology that assumes single trait values as optimal solutions for environments. In conclusion, patterns of trait variation both across and within species should be considered in future studies that assess trade-offs among traits over environmental gradients.
Figure 3 in In front of a mirror: visual displays may not be aggressive signals in nocturnal tree frogs
Figure 3. Rate of vocal-sac (emission time/total time), limb lifting (events/min) and toe/finger trembling (events/min) displays by males of Hypsiboas raniceps (n = 6), Dendropsophus nanus (n = 6) and Lysapsus limellum (n = 5) subjected to two treatments (Self Image and Control) in the southeastern Pantanal, Corumbá, state of Mato Grosso do Sul, Brazil. Toe/finger trembling behaviour was performed only by males of H. raniceps during the experiments. Each pair of points represents one individual; and points may overlap each other. The frequency of behaviours did not differ, either between treatments or among species.
Figure 1 in In front of a mirror: visual displays may not be aggressive signals in nocturnal tree frogs
Figure 1. Males of (a) Hypsiboas raniceps, (b) Dendropsophus nanus and (c) Lysapsus limellum located in the southeastern Pantanal, Corumbá, state of Mato Grosso do Sul, Brazil. Note that all males perform the vocal-sac display behaviour (inflate the vocal sac, with or without vocalization, and maintain it inflated for some time).
Figure 2 in In front of a mirror: visual displays may not be aggressive signals in nocturnal tree frogs
Figure 2. Self Image treatment applied to a male of Hypsiboas raniceps in the southeastern Pantanal, Corumbá, state of Mato Grosso do Sul, Brazil. The reflection of the animal in the mirror (14 × 8 cm), positioned at an angle of approximately 45° in relation to the male's body position, simulated the presence of an intruder male in the resident's territory.
Scalable Randomized Benchmarking of Quantum Computers using Mirror Circuits
<p>This is supplemental data and code for: T. Proctor et al., <em><a href="http://https://doi.org/10.48550/arXiv.2112.09853">Scalable randomized benchmarking of quantum computers using mirror circuits</a>, </em>arXiv 2112.09853 (2021).</p> <p>This folder contains all the data and the analysis code to generate the results presented in that paper. The core data analysis routines use PyGSTi, which can be found at <a href="https://github.com/pyGSTio/pyGSTi">https://github.com/pyGSTio/pyGSTi</a>.</p> <p>Please direct any questions to Timothy Proctor (tjproct@sandia.gov).</p>
FIGURE 3 in Allozyme differentiation among populations of the Pyrenean newt Calotriton asper (Amphibia: Caudata) does not mirror their morphological diversification
FIGURE 3. An example of differentiation among populations of C. asper at the morphological level. Both specimens are representative of full grown adults from Fanlo (smaller, SVL 47.15 mm) and Susqueda (larger specimen, SVL 81.35 mm). Their size and shape, as in this case, together with coloration differences, have been used as indications for taxonomic subdivisions in C. asper.
FIGURE 2 in Allozyme differentiation among populations of the Pyrenean newt Calotriton asper (Amphibia: Caudata) does not mirror their morphological diversification
FIGURE 2. Snout-vent-length distribution of C. asper in the Pi Valley. Above the axis, SVL of specimens from a first capture; below the axis, SVL distribution of recaptured specimens. Arrows indicate the low proportion of small adults in the recaptured sample.
FIGURE 1 in Allozyme differentiation among populations of the Pyrenean newt Calotriton asper (Amphibia: Caudata) does not mirror their morphological diversification
FIGURE 1. Map of the Pyrenees, comprising the complete geographic distribution of Calotriton asper (not delineated). The sampling sites for the allozyme study are indicated by numbers: 1.- Zuriza, 2.- Espelunciecha, 3.- Piedrafita, 4.- San Juan de la Peña, 5.- Fanlo, 6.- Pi, 7.- Susqueda. The solid circle represents Calotriton arnoldi populations.
FIGURE 15. Cheliceral promargin, anterior view. A. Periegops suteri. B. Drymusa capensis. C. Scytodes globula. D. Stedocys leopoldi. E. Loxosceles rufescens. F. Sicarius rupestris, mirrored. A–B, E–F in The placement of the spider genus Periegops and the phylogeny of Scytodoidea (Araneae: Araneomorphae)
FIGURE 15. Cheliceral promargin, anterior view. A. Periegops suteri. B. Drymusa capensis. C. Scytodes globula. D. Stedocys leopoldi. E. Loxosceles rufescens. F. Sicarius rupestris, mirrored. A–B, E–F. Inset showing row of modified setae against promarginal lobe base (character 30). Scales: A–B, F 500 µm, C 50 µm, D–E 100 µm. Abbreviations: pL, promarginal lobe (character 28); pT, cheliceral promarginal tooth (character 24); Vo, venom outlet (character 35).
AID overexpression leads to aggressive murine CLL and non-Ig mutations that mirror human neoplasms
<p></p><p>Most cancers become more dangerous by the outgrowth of malignant subclones with additional DNA mutations that favor proliferation or survival. Using chronic lymphocytic leukemia (CLL), a disease exemplary of this process, and a model for neoplasms in general, we created transgenic mice overexpressing the enzyme, activation-induced deaminase (AID), whose normal function is to induce DNA mutations in B lymphocytes. AID allows normal B lymphocytes to develop more effective immunoglobulin (Ig)-mediated immunity, but also is able to mutate non-Ig genes, predisposing to cancer. In chronic lymphocytic leukemia (CLL), AID expression correlates with poor prognosis suggesting a role for this enzyme in disease progression. Nevertheless, direct experimental evidence identifying the specific genes that are mutated by AID and indicating that those genes are associated with disease progression is not available. To address this point, we overexpressed Aicda in a murine model of CLL (Em-TCL1). Analyses of TCL1/AID mice demonstrate a role for AID in disease kinetics, CLL-cell proliferation, and the development of cancer-related target mutations with canonical AID signatures in non-Igs genes. Notably, our mouse models can accumulate mutations in the same genes that are mutated in human cancers. Moreover, some of these mutations occur at homologous positions, leading to identical or chemically-similar amino acid substitutions as in human CLL and lymphoma. Together, these findings support a direct link between aberrant AID activity and CLL driver mutations that are then selected for their oncogenic effects, whereby AID promotes aggressiveness in CLL and other B-cell neoplasms.</p><p></p>
Text-fig. 15. Lightly worn molars of Sayimys hintoni n. sp. (f, g, h) and S. cf. minor (e and i) from locality H.-GSP81.14a and S. chinjiensis from H.-GSP82.24 (a, b, c, d). Upper molars: occlusal surfaces and labial sides, lower molars occlusal surfaces and lingual sides. Side views horizontally-mirrored, anterior indicated by arrows. in An Exceptional Large Sample Of The Early Miocene Ctenodactyline Rodent Sayimys Giganteus, Specific Variation And Taxonomic Implications
Text-fig. 15. Lightly worn molars of Sayimys hintoni n. sp. (f, g, h) and S. cf. minor (e and i) from locality H.-GSP81.14a and S. chinjiensis from H.-GSP82.24 (a, b, c, d). Upper molars: occlusal surfaces and labial sides, lower molars occlusal surfaces and lingual sides. Side views horizontally-mirrored, anterior indicated by arrows.
Text-fig. 11. Cheek teeth of Sayimys giganteus from Keseköy. Anterior sides are indicated by arrows. Top row: labial sides of M3, M2, M1 and DP4, images horizontally-mirrored. Second row: occlusal surfaces of M3, M2, M1 and DP4 of the same specimens. Third row: lingual sides of m3, m2, m1 and dp4, images horizontally-mirrored. Lower row: occlusal surfaces of m3, m2, m1 and dp4 of the same specimens. in An Exceptional Large Sample Of The Early Miocene Ctenodactyline Rodent Sayimys Giganteus, Specific Variation And Taxonomic Implications
Text-fig. 11. Cheek teeth of Sayimys giganteus from Keseköy. Anterior sides are indicated by arrows. Top row: labial sides of M3, M2, M1 and DP4, images horizontally-mirrored. Second row: occlusal surfaces of M3, M2, M1 and DP4 of the same specimens. Third row: lingual sides of m3, m2, m1 and dp4, images horizontally-mirrored. Lower row: occlusal surfaces of m3, m2, m1 and dp4 of the same specimens.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.