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155 results for “multilocus phylogeny”
Figure 1 in Multilocus phylogeny and morphological analyses illuminate overlooked diversity of Soriculus (Mammalia: Eulipotyphla: Soricidae), with descriptions of two new endemic species from the eastern Himalayas
Figure 1. Sample localities of specimens used in the phylogenetic analysis.
Figure 5 in Multilocus phylogeny and morphological analyses illuminate overlooked diversity of Soriculus (Mammalia: Eulipotyphla: Soricidae), with descriptions of two new endemic species from the eastern Himalayas
Figure 5. Estimated divergence times of the genus Soriculus using BEAST.
Figure 8 from: Huang C, Lee Y, Lin S, Wu W (2014) Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. ZooKeys 445: 31-55. https://doi.org/10.3897/zookeys.445.7778
Figure 8 - Living snail Aegista diversifamilia sp. n. from Heren, Xiulin Township, Hualien County, Taiwan (sampling site 19 in Table 1).
Figure 7 from: Huang C, Lee Y, Lin S, Wu W (2014) Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. ZooKeys 445: 31-55. https://doi.org/10.3897/zookeys.445.7778
Figure 7 - Shell images of Aegista diversifamilia sp. n. and Aegista subchinensis. Aegista diversifamilia sp. n.: A holotype, NMNS-7276-001 B–E paratype, NHMUK20140070, the same locality of holotype. Aegista subchinensis: F collected from Zhishanyan, Taipei City G collected from Linmei Shipan Trail, Jiaoxi Township, I-Lan County. Scale bar = 1 cm.
Figure 2 from: Huang C, Lee Y, Lin S, Wu W (2014) Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. ZooKeys 445: 31-55. https://doi.org/10.3897/zookeys.445.7778
Figure 2 - Maximum likelihood phylogeny and sampling sites of Aegista spp. Reconstructed phylogeny was based on concatenated sequences of mitochondrial COI, 16S and nuclear ITS2 genes. Branch support confidences of clades are shown in bootstrap, approximate likelihood-ratio test and Bayesian posterior probability, respectively. The log likelihood of maximum likelihood tree = -6584.1713. The numbered sampling sites are detailed in Table 1.
Figure 5 from: Huang C, Lee Y, Lin S, Wu W (2014) Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. ZooKeys 445: 31-55. https://doi.org/10.3897/zookeys.445.7778
Figure 5 - Principle component analysis (PCA) of Aegista subchinensis and Aegista diversifamilia sp. n. A PCA of measurements and ratios B relative warps PCA of shell shape coordinates.
Figure 4 from: Huang C, Lee Y, Lin S, Wu W (2014) Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. ZooKeys 445: 31-55. https://doi.org/10.3897/zookeys.445.7778
Figure 4 - Genital morphology of A Aegista diversifamilia sp. n. and B Aegista subchinensis. Scale bar = 1 cm. A: atrium; AG: albumen gland; AS: accessory-sac of auxiliary copulatory organ; BC: bursa copulatory; DS: dart-sac of auxiliary copulatory organ; E: epiphallus; EF: epiphallial flagellum; FO: free oviduct; HD: hermaphroditic duct; M: gland of the auxiliary copulatory organ; P: penis; PBC: pedunculus of bursa copulatory; PR: penis retractor; SOD: spermoviduct; V: vagina; VD: vas deferens.
Figure 3 from: Huang C, Lee Y, Lin S, Wu W (2014) Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. ZooKeys 445: 31-55. https://doi.org/10.3897/zookeys.445.7778
Figure 3 - Haplotype networks of mitochondrial COI, 16S and nuclear ITS2 genes. Species are presented by colors. Haplotype frequency is shown by the size of the circular. Name of haplotype is numbered and presented inside the circle. Haplotypes are connected by simple line represent one mutation between haplotypes. Number of mutations between haplotypes are shown in square. Red dots are missing or hypothetical haplotypes.
Figure 1 from: Huang C, Lee Y, Lin S, Wu W (2014) Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. ZooKeys 445: 31-55. https://doi.org/10.3897/zookeys.445.7778
Figure 1 - Morphometric measurement of shell size variation of Aegista diversifamilia sp. n. (shown in this figure) in top view, apertural view and umbilical view. AA: angle of apex; AH: aperture height; AW: aperture width; BH: body whorl height; FW: first whorl width; SBH: secondary body whorl height; SH: shell height; SW: shell width; UW: umbilicus width; 2W–6W: 2nd–6th whorl width.
Supplementary material 2 from: Zhou LY, Zhan ZH, Zhu XL, Wan X (2022) Multilocus phylogeny and species delimitation suggest synonymies of two Lucanus Scopoli, 1763 (Coleoptera, Lucanidae) species names. ZooKeys 1135: 139-155. https://doi.org/10.3897/zookeys.1135.89257
Morphological comparisons between phylogenetic clades
Supplementary material 3 from: Zhou LY, Zhan ZH, Zhu XL, Wan X (2022) Multilocus phylogeny and species delimitation suggest synonymies of two Lucanus Scopoli, 1763 (Coleoptera, Lucanidae) species names. ZooKeys 1135: 139-155. https://doi.org/10.3897/zookeys.1135.89257
The mean genetic distance among populations in each collection area (K2P-distances)
Supplementary material 1 from: Zhou LY, Zhan ZH, Zhu XL, Wan X (2022) Multilocus phylogeny and species delimitation suggest synonymies of two Lucanus Scopoli, 1763 (Coleoptera, Lucanidae) species names. ZooKeys 1135: 139-155. https://doi.org/10.3897/zookeys.1135.89257
A list of specimens' voucher information and GenBank accession numbers used in this study
Data from: Coestimating reticulate phylogenies and gene trees from multilocus sequence data
Open the record for dataset details and reuse information.
Figure 6 from: Huang C, Lee Y, Lin S, Wu W (2014) Taxonomic revision of Aegista subchinensis (Möllendorff, 1884) (Stylommatophora, Bradybaenidae) and a description of a new species of Aegista from eastern Taiwan based on multilocus phylogeny and comparative morphology. ZooKeys 445: 31-55. https://doi.org/10.3897/zookeys.445.7778
Figure 6 - Mean shell shape of A Aegista subchinensis and B Aegista diversifamilia sp. n.
FIGURE 9 in Morphology and multilocus phylogeny of the Spiny-footed Lizard (Acanthodactylus erythrurus) complex reveal two new mountain species from the Moroccan Atlas
FIGURE 9. Phenotypic variation in juveniles. Pileus of juveniles in A lacrymae sp. nov. (A, BEV.11981 & B, BEV. 11990, both from Tislit) and A. montanus sp. nov. (C, JCB.A546, Jbel Siroua & D, BEV.11792, Tizi n'Tichka). Caudal and cloacal colour patterns in juveniles of A. lacrymae sp. nov. (E, BEV.11986 & F, BEV.11990, both from Tislit), A. montanus sp. nov. (G, BEV.11798, Tizi n'Tichka & H, JCB.A546, Jbel Siroua) and A. erythrurus (I, BEV.11926, Dayet Ifrah & J, BEV.11595, Marrakech). Photo credits: A, B, E, F, I (PG), D, G, J (PAC), C, H (JCB).
FIGURE 6 in Morphology and multilocus phylogeny of the Spiny-footed Lizard (Acanthodactylus erythrurus) complex reveal two new mountain species from the Moroccan Atlas
FIGURE 6. Phenotypic variation in Acanthodactylus montanus sp. nov. and A. lacrymae sp. nov. (compare with figure 6 showing the phenotypic variation in the rest of the Acanthodactylus erythrurus group): (A) BEV.11795*, (B) BEV.11793*, (C) MNHN-RA-2018.0026 (holotype of Acanthodactylus montanus), (D) BEV.11797, (E) BEV.11988, (F) BEV.11989, (G) MNHN- RA- 2018.0027 (holotype of A. lacrymae), (H) BEV.11992, (I) BEV.11998, (J) BEV.12000, (K) BEV.11997, (L) BEV.12006. Asterisks indicate symmetrically reversed pictures. Photo credits: A to D (PAC), E to L (PG).
FIGURE 4 in Morphology and multilocus phylogeny of the Spiny-footed Lizard (Acanthodactylus erythrurus) complex reveal two new mountain species from the Moroccan Atlas
FIGURE 4. Morphological results: (A) Heat map presenting an overview of the variation measured in the morphological dataset; (B) multivariate analyses (PCA) using the 26 morphological variables (adults only, males and females analysed separately): B1. Bivariate plot of PC1 and PC2 scores from a PCA run on all adult specimens of the A. erythrurus species complex, B2. Bivariate plot on a reduced data-set of all individuals characterized by a "bellii" supralabial condition.
FIGURE 3 in Morphology and multilocus phylogeny of the Spiny-footed Lizard (Acanthodactylus erythrurus) complex reveal two new mountain species from the Moroccan Atlas
FIGURE 3. Coalescent species tree inferred by ASTRAL from nine ML trees independently reconstructed for each nuclear locus. Branch lengths are corresponding to coalescent units and are a direct measure of the amount of discordance in the gene trees, whereas the branch support values measure the support for each quadripartition. The number of samples used in each locality is indicated between parentheses. Al: Algeria, Mo: Morocco, Po: Portugal, Sp: Spain, Tu: Tunisia.
FIGURE 7 in Morphology and multilocus phylogeny of the Spiny-footed Lizard (Acanthodactylus erythrurus) complex reveal two new mountain species from the Moroccan Atlas
FIGURE 7. Phenotypic variation in the rest of the Acanthodactylus erythrurus group (IM, CA and AT clades). (A) BEV.11830, (B) BEV.11833, (C) BEV.11619*, (D) BEV.11615, (E) BEV.11968, (F) BEV.11972, (G) BEV.11845*, (H) BEV.11849*, (I) BEV.11826*, (J) BEV.11825*, (K) PGe.1539, (L) PGe.1538, (M) BEV.T4232* from Senalba, and (N) uncatalogued specimen* from Theniet. Asterisks indicate symmetrically reversed pictures. Photo credits: A to D (PAC), E to F (PG), G to J (AM), K to L (Jean-Michel Bompar), M (Vincent Rivière) and N (MB).
Appendix III. Morphological variation within the type series of Acanthodactylus montanus sp. nov. HT: holotype, PT: paratype. Ad.: adult, Subad.: subadult, Juv.: juvenile. F: female, M: male. Cf. Material and methods for the other abbreviations used. in Morphology and multilocus phylogeny of the Spiny-footed Lizard (Acanthodactylus erythrurus) complex reveal two new mountain species from the Moroccan Atlas
Appendix III. Morphological variation within the type series of Acanthodactylus montanus sp. nov. HT: holotype, PT: paratype. Ad.: adult, Subad.: subadult, Juv.: juvenile. F: female, M: male. Cf. Material and methods for the other abbreviations used.
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