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229
datasets available to search
ShareScore release 0.7.1
Dataset results
229 results for “plant genomics”
Whole genome bisulfite sequencing of five-week-old Arabidopsis thaliana (ecotype Col-0) plants from water and jasmonic acid treated seedlings.
GEO Series GSE163262. Arabidopsis thaliana. 6 samples. Type: Methylation profiling by high throughput sequencing.
Nuclear compensation to a lineage-specific mitochondrial genomic rearrangement in plants
GEO Series GSE166459. Arabidopsis thaliana. 14 samples. Type: Expression profiling by high throughput sequencing.
N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses[SMRT sequencing Nipponbare]
GEO Series GSE108783. Oryza sativa. 1 samples. Type: Methylation profiling by high throughput sequencing.
RNAseq of xylem tissue of transgenic and wildtype Populus trichocarpa (NSF Plant Genome Research Program Project 0922391)
GEO Series GSE78953. Populus trichocarpa. 378 samples. Type: Expression profiling by high throughput sequencing.
N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses
GEO Series GSE108784. Oryza sativa. 22 samples. Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Genome-wide effect of cholera toxin and nitrate treatment in etiolated rice plants
GEO Series GSE20924. Oryza sativa. 2 samples. Type: Expression profiling by array.
Whole genome bisulfite sequencing of two/three-week-old Arabidopsis thaliana plants of the genotypes Col-0, nrpe1-11 and ros1-4.
GEO Series GSE199625. Arabidopsis thaliana. 12 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide analysis of Botrytis cinerea genes targeting plant cell walls of different hosts [grape]
GEO Series GSE57587. Botrytis cinerea; Vitis vinifera. 4 samples. Type: Expression profiling by high throughput sequencing.
N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses [BiSulfite-seq]
GEO Series GSE121274. Oryza sativa. 4 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide transcriptome and epigenome data analysis of kaku4-2 mutant and WT plants
GEO Series GSE247174. Arabidopsis thaliana. 12 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Time-resolved genome-wide pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae (Xoo) via RNA-Seq
GEO Series GSE61607. Xanthomonas oryzae pv. oryzae KACC 10331. 14 samples. Type: Expression profiling by high throughput sequencing.
The genomes and epigenomes of aquatic plants (Lemnaceae) promote triploid hybridization and clonal reproduction [WGS]
GEO Series GSE238135. Lemna gibba; Lemna japonica; Lemna turionifera; Lemna minor; Wolffia australiana. 17 samples. Type: Other.
Genome-wide transcriptome analysis of maize (Zea mays c.v. Nathan) plants infected by Colletotrichum graminicola strains.
GEO Series GSE48208. Zea mays. 3 samples. Type: Expression profiling by high throughput sequencing.
Genome wide gene-expression analysis of the spider mite Tetranychus urticae after long term host transfer from acyanogenic Phaseolus vulgaris cv. 'Prelude' bean plants to cyanogenic Phaseolus lunatus
GEO Series GSE50162. Tetranychus urticae. 4 samples. Type: Expression profiling by array.
Chloroplast redox status modulates genome-wide plant responses during plant-microbe interaction
GEO Series GSE92596. Nicotiana tabacum. 8 samples. Type: Expression profiling by array.
Cas-SF01, an engineered Cas12i nuclease is an efficient genome editing tool in mammalian cells and plants
GEO Series GSE236755. Homo sapiens. 8 samples. Type: Other.
Genome-wide expression analysis of PTI and ETI responses in wild type and PRR-deficient Arabidopsis plants
GEO Series GSE142747. Arabidopsis thaliana. 45 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide mapping of uncapped and cleaved transcripts reveals a role for the nuclear messenger RNA cap-binding complex in plant co-translational RNA decay
GEO Series GSE71913. Arabidopsis thaliana. 4 samples. Type: Other.
Integrative genome-wide analysis reveals HLP1, a novel RNA-binding protein， regulates plant flowering by targeted alternative polyadenylation
GEO Series GSE39051. Arabidopsis thaliana. 8 samples. Type: Expression profiling by high throughput sequencing; Other.
Assembly and annotation of Solanum dulcamara and Solanum nigrum plant genomes, two nightshades with contrasting susceptibilities to Ralstonia solanacearum
GEO Series GSE262401. Solanum dulcamara. 1 samples. Type: Methylation profiling by high throughput sequencing.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.