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140 results for “ribosomal genes”
Figure 6 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
Figure 6. Cladogram showing the evolution of Opalinata* based on the proposed evolution of morphological traits (white circles; Delvinquier and Patterson 1993) and the characteristics of the rRNA genes (green circles). The relationships within Proteromonadida are not clear and are represented as a polytomy. Evolutionary steps are as follows. (1) Uninucleated cells develop cytoplasmic membranes with ridges or folds supported by a cortical cytoskeleton; few flagella* with a transitional helix in its structure; rRNA with secondary structure and GC content similar to that of outgroup taxons (i.e. Blastocystis). (2) Multiple flagella covering the cell surface; marginal falx. (3) Insertions made of short tandem repeats (STRs) in the expansion regions of rRNA; low GC in rRNA insertions and ITS1–ITS2 regions. (4) Binucleated (occasionally four-nucleated) cells. (5) Increase in number and length of rRNA insertions; very low GC content in rRNA insertions and ITS1–ITS2 regions. (6) Axial falx. (7) Multinucleate cells. (8) Partial loss of kineties. The position of Hegneriella* if valid* cannot be determined with available data.
FIGURE 9 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 9. Phylogeny of the Chinese Prionini based on combined sequences of 12S rRNA, 16S rRNA and COI (excluding Priotyrannus closteroides). A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values (%), Wtd. S.S. = 0.0245, APSD = 3.011, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values (%), -Ln likelihood =8113.8589, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values (%), tree length = 1415, CI = 0.6919, RI =0.3344, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities (%), the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
FIGURE 5 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 5. Phylogeny of the Chinese Prionini based on partial sequences of COI. A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values (%), Wtd. S.S. = 0.0455, APSD = 4.103, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values (%), -Ln likelihood = 3935.3320, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values (%), tree length =726, CI = 0.6364, RI = 0.2941, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities (%), the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
FIGURE 8 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 8. Phylogeny of the Chinese Prionini based on combined sequences of 12S rRNA, 16S rRNA and COI. A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values (%), Wtd. S.S. = 0.0496, APSD = 3.764, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values (%), -Ln likelihood = 8567.6164, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values (%), tree length = 1518, CI = 0.6726, RI = 0.3329, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities (%), the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
Mechanisms Coordinating Ribosomal Protein Gene Transcription in Response to Stress
GEO Series GSE155235. Saccharomyces cerevisiae. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Other.
CMTR1 is recruited to transcription start sites and has enhanced influence over ribosomal protein and histone genes [ChIP-seq]
GEO Series GSE175628. Mus musculus. 18 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Defective ribosomal protein gene expression alters transcription, translation, apoptosis, and oncogenic pathways in Diamond-Blackfan anemia.
GEO Series GSE41599. Homo sapiens. 27 samples. Type: Expression profiling by array.
The multiple myeloma risk allele at 5q15 lowers ELL2 expression and increases ribosomal gene expression
GEO Series GSE111211. Homo sapiens. 21 samples. Type: Expression profiling by high throughput sequencing.
Implantation Failure of Blastocysts Derived from Oocyte-directed Connexin 43 depleted Mice is Associated with Impaired Ribosomal and Translational Machinery Gene Expression
GEO Series GSE35299. Mus musculus. 8 samples. Type: Expression profiling by array.
Multi-omics analysis reveals CMTR1 upregulation in cancer and roles in ribosomal protein gene expression and tumor growth
GEO Series GSE290345. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Effect of ribosomal protein intron deletion on gene expression
GEO Series GSE35541. Saccharomyces cerevisiae. 78 samples. Type: Expression profiling by array.
CMTR1 is recruited to transcription start sites and has enhanced influence over ribosomal protein and histone genes
GEO Series GSE175631. Mus musculus. 29 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Impaired function of rDNA transcription initiation machinery leads to derepression of ribosomal genes with insertions of R2 retrotransposon
GEO Series GSE183035. Drosophila melanogaster. 8 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Treehouse compendium of ribosomal-depletion RNA-Seq gene expression data from 43 PDX
GEO Series GSE268100. Homo sapiens. 0 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
Schizophrenia risk gene ZNF804A controls ribosome localization and synaptogenesis in developing human neurons
GEO Series GSE254523. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
Treehouse compendium of ribosomal-depletion RNA-Seq gene expression data from 296 tumors
GEO Series GSE268134. Homo sapiens. 0 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
Gene and protein sequence features augment HLA class I ligand predictions (ribosome profiling)
GEO Series GSE210998. Homo sapiens. 6 samples. Type: Other.
eIF1-eIF4G1 inhibitors uncover alternative translation activation of stress-response genes via enhanced ribosome loading and 5’UTR translation [MARS-seq]
GEO Series GSE166743. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Cell-type-specific gene expression profiling using ribosome affinity purification
GEO Series GSE89993. Drosophila melanogaster. 12 samples. Type: Expression profiling by high throughput sequencing.
eIF1-eIF4G1 inhibitors uncover alternative translation activation of stress-response genes via enhanced ribosome loading and 5’UTR translation
GEO Series GSE166744. Homo sapiens. 24 samples. Type: Expression profiling by high throughput sequencing; Other.
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