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162
datasets available to search
ShareScore release 0.9.0
Dataset results
162 results for “rna 3d”
3D genome organization during TGFB-induced transcription requires nuclear microRNA and G-quadruplexes [RNA-Seq]
GEO Series GSE244951. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
CRISPR/Cas9/AAV9-sgRNA Mediated In Vivo Genome Editing Reveals the Indispensability of Myc During Muscle Stem Cells Activation by Remodeling the 3D Chromatin [RNA-seq(FISC-DSC)]
GEO Series GSE133955. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle [RNA-Seq]
GEO Series GSE155160. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing.
rRNA Biogenesis Regulates Mouse 2C-like State by 3D Structure Reorganization of Peri-Nucleolar Heterochromatin [RNA-seq]
GEO Series GSE166025. Mus musculus. 12 samples. Type: Expression profiling by high throughput sequencing.
CRISPR/Cas9/AAV9-sgRNA Mediated In Vivo Genome Editing Reveals the Indispensability of Myc During Muscle Stem Cells Activation by Remodeling the 3D Chromatin [RNA-seq (myc&bcl6)]
GEO Series GSE133956. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Heterochromatic 3D genome organization is directed by HP1a and H3K9-dependent and independent mechanisms [RNA-seq]
GEO Series GSE234276. Drosophila melanogaster. 7 samples. Type: Expression profiling by high throughput sequencing.
The 3D enhancer network of the developing T cell genome is controlled by SATB1 [RNA-seq]
GEO Series GSE173470. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
An RNA polymerase III tissue and tumor atlas uncovers context-specific activities linked to 3D epigenome regulatory mechanisms
GEO Series GSE306220. Homo sapiens. 24 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Cooperation of chromatin remodeling SWI/SNF complex and pioneer factor AP1 shapes 3D enhancer landscapes [RNA-Seq]
GEO Series GSE175531. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Hyperosmotic stress induces a large-scale rewiring of 3D chromatin interactions [RNA-Seq]
GEO Series GSE310049. Homo sapiens. 14 samples. Type: Expression profiling by high throughput sequencing.
EWSR1-ATF1 dependent 3D connectivity regulates oncogenic and differentiation programs in Clear Cell Sarcoma [RNA-seq]
GEO Series GSE180196. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
CRISPR/Cas9/AAV9-sgRNA Mediated In Vivo Genome Editing Reveals the Indispensability of Myc During Muscle Stem Cells Activation by Remodeling the 3D Chromatin[RNA-seq(QSC-Ctrl/sgMyc)]
GEO Series GSE175899. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
3D Chromosome Regulatory Landscape of Human Pluripotent Cells [RNA-Seq]
GEO Series GSE69692. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Investigation of 3D Chromatin Architecture Rewiring During Muscle Satellite Cells activation and aging [RNA-seq SC]
GEO Series GSE189840. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
Polymer-mediated oligo delivery enables construction of spatially encoded 3D cultures for analysis by single-cell RNA sequencing
GEO Series GSE245416. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
Analysis of 3D human airway epithelial cultures by single-cell RNA-seq
GEO Series GSE166601. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing.
3D genome of CD8+ T cells reveals IRF8-mediated exhaustion in cancer [RNA-seq]
GEO Series GSE299306. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq of TGF-beta1-induced NRK-52E cells after treatment with 2D- and 3D-EVs
GEO Series GSE281863. Rattus norvegicus. 12 samples. Type: Expression profiling by high throughput sequencing.
Predicting modulaters of TE-driven chromatin 3D structure (RNA-seq)
GEO Series GSE248861. Homo sapiens. 10 samples. Type: Expression profiling by high throughput sequencing.
LKB1 inhibition in alveolar epithelial cells induces fibroblast activation in pulmonary fibrosis [RNA-seq in 3D co-cultured ATII+MRC5]
GEO Series GSE205965. Homo sapiens. 6 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.