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1,025 results for “salmon”
Code and data for: Modeling the interaction between salmon management and consumption by coastal brown bears
<p>Harvest management policy for species with strong trophic connections can reverberate through food webs and cause unintended consequences such as altering the abundance of a harvested species' predators or prey. Pacific salmon (<em>Oncorhynchus</em> spp.), a key food for many predators and an economically valuable harvested species, is generally managed for maximum sustained harvests without explicit consideration for the freshwater and terrestrial food webs which they support. The density of brown bear (<em>Ursus</em> <em>arctos</em>) populations in Alaska, USA is correlated with the amount of salmon they can access and consume, so it seems likely their populations are inadvertently affected by salmon management. We simulated the effect of salmon management policy on brown bears by customizing a general bear-salmon model using empirical data from three watersheds in southwest Kodiak, Alaska. Our goal was to quantify the effect of current salmon management policy (i.e., escapement goals and early/late run allocations) on salmon consumption by brown bears. Bears in the individually based model evaluated the value of each foraging site based on salmon abundance, salmon vulnerability, and competition with other bears and made movement decisions (among salmon spawning sites) accordingly. </p> <p>The two code files provided here contain the brown bear salmon simulation, the structure for setting and adjusting the parameters of the model, and two empirical datasets needed to run simulations.</p>
Fig. 1 in Catch of Coho Salmon (Oncorhynchus kisutch) Infected with the Freshwater Parasite Salvelinema walkeri (Nematoda: Cystidicolidae) in the Gulf of Alaska in the Early Winter
Fig. 1. Locations of salmonid collection along a south-north transect (from 44°32′N to 52°06′N along ca. 145°W) in the Gulf of Alaska in mid-December 1992 and those of salmonids infected with Salvelinema walkeri in marine and estuarine waters based in this and past papers. Open circles, catch locations of infected salmonids; closed circles, locations with salmonid catch; and crosses, locations without salmonid catch. Location 1, 52°06′N, 145°56′W (this paper); location 2, the Columbia River estuary (Claxton et al. 2013); location 3, off Newport, Oregon (Olson 1978); locations 4 and 5, the Strait of Georgia near Nanoose (Margolis 1967a) and Nanaimo (Ekbaum 1935, 1936; Margolis 1967a), respectively; and locations 6–10, Cowichan Bay, Satellite Channel, the Strait of Juan de Fuca, Sechelt Inlet, and Howe Sound, respectively (Godfrey 1968).
Pre-fertilisation gamete thermal environment influences reproductive success, unmasking opposing sex-specific responses in Atlantic Salmon
<p>The environment gametes perform in just before fertilisation is increasingly recognised to affect offspring fitness, yet the contributions of male and female gametes and their adaptive significance remain largely unexplored. Here, we investigated gametic thermal plasticity and its effects on hatching success and embryo performance in Atlantic salmon (Salmo salar). Eggs and sperm were incubated overnight at 2°C or 8°C, temperatures within the optimal thermal range of this species. Crosses between warm- and cold-incubated gametes were compared using a fully-factorial design, with half of each clutch reared in cold temperatures and the other in warm temperatures. This allowed disentangling single-sex interaction effects when pre-fertilisation temperature of gametes mismatched embryonic conditions. Pre-fertilisation temperature influenced the age at hatch, and matching sperm and embryo temperatures resulted in earlier hatching. Warm incubation benefited eggs but harmed sperm, reducing the hatching success and, overall, gametic thermal plasticity did not enhance offspring fitness, indicating vulnerability to thermal changes. We highlight the sensitivity of male gametes to higher temperatures, and that gamete acclimation may not effectively buffer against deleterious effects of thermal fluctuations. From an applied angle, we propose the differential storage of male and female gametes as a tool to enhance sustainability within the hatcheries.</p>
Data from: Alternative life-history strategy contributions to effective population size in a naturally spawning Salmon population
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Data from: Timing and probability of arrival for sea lice dispersing between salmon farms
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Data from: Patterns of sperm swimming behaviour depend on male mating tactic and spawning environment in chinook salmon
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Juvenile life history, migration, and habitat use of natural- versus hatchery-origin Chinook salmon
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Time spent in distinct life-history stages has sex-specific effects on reproductive fitness in wild Atlantic salmon
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Chromosomal aberrations and early mortality in a non-mammalian vertebrate: example from pressure-induced triploid Atlantic salmon
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Code and data for: Modeling the interaction between salmon management and consumption by coastal brown bears
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Data from : Variation in salmon migration phenology bolsters population stability but is threatened by drought
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Postrelease exploration and stress tolerance of landlocked and anadromous Atlantic salmon and their hybrids
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Identification of infectious agents in early marine Chinook and Coho salmon associated with cohort survival
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Atlantic salmon survival at sea: temporal changes that lack regional synchrony
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Body size and early marine conditions drive changes in Chinook salmon productivity across northern latitude ecosystems
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Data from: Reconstructing salmon growth trajectories through biochronologies across a highly variable growthscape
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Data from: The effects of hybridization and parasite infection on predation survival and behaviour of endangered landlocked salmon – implications for genetic rescue
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Subyearling Chinook salmon diets in Lower Columbia River estuarine habitats
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Data from: Next-generation matrices for marine metapopulations: the case of sea lice and salmon farms
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Data from: Smallmouth bass (Micropterus dolomieu) and chain pickerel (Esox niger) identified as Atlantic salmon (Salmo salar) smolt predators in a reservoir system
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.