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271
datasets available to search
ShareScore release 0.9.0
Dataset results
271 results for “scATAC”
Single-cell mulitome (paired scRNA-seq + scATAC-seq) analysis of PBMCs from infants and young children during COVID-19 infection
GEO Series GSE239799. Homo sapiens. 86 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
scATAC-seq of mouse 3,5-diethoxycarbonyl-1,4-dihydrocollidine (DDC) induced liver injury model
GEO Series GSE230091. Mus musculus. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Time-restricted feeding prevents deleterious metabolic effects of circadian disruption through epigenetic control of β-cell function [scATAC-seq]
GEO Series GSE182937. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
MOF-mediated histone H4 lysine 16 acetylation governs mitochondrial and ciliary functions by controlling promoter interactions (scATAC-Seq)
GEO Series GSE214439. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mechanistic study of Wee1 kinase inhibition with AZD1775 exposes drug targetable vulnerabilities in acute B-lymphoblastic leukemia [scATAC-seq]
GEO Series GSE218805. Homo sapiens. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single-Cell Multimodal Profiling Highlights Persistent Aortic Smooth Muscle Cell Changes in Diabetic Mice Despite Glycemic Control [scATAC-seq]
GEO Series GSE294115. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Single-cell multi-omic analysis of the vestibular schwannoma ecosystem uncovers a nerve injury-like state [scATAC-seq]
GEO Series GSE216782. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis [SCATAC_10X]
GEO Series GSE154175. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Integrative single cell analysis of progressive multiple sclerosis induced neural stem cells reveals epigenetically dysregulated type-I-interferon signaling [scATAC-seq]
GEO Series GSE297690. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Temporal Coordination of the Transcription Factor Response to H2O2stress [scATAC-seq and scRNA-seq]
GEO Series GSE227555. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Single-cell lineage capture across genomic modalities with CellTag-multi reveals fate-specific gene regulatory changes [scATAC-seq - iEP].
GEO Series GSE217119. Mus musculus. 29 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Chromatin accessibility and mitochondrial genotype from single cells of the retina and choroid in human MELAS (m.3243A>G) and control samples [scATAC-seq]
GEO Series GSE202746. Homo sapiens. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Mouse lung injury-repair induces Ntrk2-tk in CAP1 endothelial cells (scATAC-Seq)
GEO Series GSE261081. Mus musculus. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Probing cell identity hierarchies by fate titration and collision during direct reprogramming [scRNA-seq & scATAC-seq]
GEO Series GSE211863. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Dissecting transcriptional and chromatin accessibility heterogeneity of proliferating cone precursors in human retinoblastoma tumours by single cell sequencing [scATAC-seq]
GEO Series GSE166174. Homo sapiens. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Transcriptional regulation of T cell exhaustion in immune checkpoint blockade resistance at single-cell resolution [ex vivo-scATAC]
GEO Series GSE268160. Mus musculus. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Esophageal progenitor cell plasticity; a 3D organotypic model of epithelial regeneration [scATAC-seq]
GEO Series GSE303427. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Inhibiting CXCR4 Attenuates TOX-Programmed Exhausted Phenotype of CD8+ T cells via Regulating JAK2/STAT3 Pathway [scATAC-seq; scRNA-seq]
GEO Series GSE262444. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
Midkine as a driver of age-related changes and increase in mammary tumorigenesis [scATAC-seq]
GEO Series GSE251833. Rattus norvegicus. 8 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Single cell approaches define two mammalian oligodendrocyte precursor cell populations and their evolution over developmental time [scATAC-seq]
GEO Series GSE255404. Mus musculus. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.