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Datasets for the Results of Scratch Tests of Green Wood and Results of Scratch Tests of Timber Components (D2.1) and Output Database for Selected Wood Parts and Timber Components: Moisture Contents and Temperatures, Moisture Induced Strains and Stresses and Crack Risk (D2.2) of 5G-TIMBER EU Project
<p>7 June 2024: added D2.2_data_statistics.zip and D2.2_analysis_results.zip, which are the datasets for D2.2 "<span>Output Database for Selected Wood Parts and Timber Components: Moisture Contents and Temperatures, Moisture Induced Strains and Stresses and Crack Risk" of the Horizon Europe Innovation Action project "5G-TIMBER: Secure 5G-Enabled Twin Transition for Europe's TIMBER Industry Sector" (project reference: 101058505).</span></p> <p>D2.2 presents the Hygro-Thermo-Mechanical (HTM) models and the finite element (FE) analyses of selected wooden components that use the material properties of wood presented in deliverable D2.1 "Input database for selected wood parts and timber components: material properties, representative environmental conditions,<br>and loads" (see below). </p> <p>------</p> <p>Figures_22_23_24_25.xlsx : Results of Scratch Tests of Green Wood</p> <p>corrected_Figures_26_27_28_29_30.xlsx : Results of results of Scratch Tests of Timber Components (new version, uploaded on 26 October 2023)</p> <p>This dataset consists of 2 Excel files that correspond to the scratch test results reported in the deliverable D2.1 "Input Database for Selected Wood Parts and Timber Components: Material Properties, Representative Environmental Conditions and Loads" of the Horizon Europe Innovation Action project "5G-TIMBER: Secure 5G-Enabled Twin Transition for Europe's TIMBER Industry Sector" (project reference: 101058505).</p> <p>The purpose of D2.1, to which this dataset is related, is to present the input data needed for the Hygro-Thermo-Mechanical (HTM) models and the related finite element (FE) analyses planned for a follow-up deliverable, i.e., the D2.2. (Output Database for Selected Wood Parts and Timber Components: Moisture Contents and Temperatures, Moisture Induced Strains And Stresses And Crack Risk). The data include the material properties for green wood and selected wooden components, as well as the plans to collect environmental conditions and loads to be considered in the analyses for prediction of the crack risk of timber components under moisture variations. In additions, new results of scratch tests of wood and wooden components, supported by computed tomography (CT) investigations, are collected to define a model for shear failure risk to be added to the HTM computational models.</p> <p>In D2.1, scratch tests carried out at VTT are described and their results are collected to provide information about the moisture effects of wood logs during cutting operations in sawmills, as well as on relevant fracture and shear properties for wooden components in sawing centres before using them to produce wooden elements of modular buildings in the production. The scratch tests are supported by CT tomography investigations and these results are also reported in the deliverable.</p> <p>D2.1 is available here: <a title="Deliverable D2.1 "Input Database for Selected Wood Parts and Timber Components: Material Properties, Representative Environmental Conditions and Loads" " href="../records/10577505" target="_blank" rel="noopener">https://zenodo.org/records/10577505</a> </p>
Characterisation and comparison of Mycoplasma bovis strain types from Irish and Scottish bovine isolates in a global context - code and datasets.
<p>The objectives of this paper were to firstly, characterise the strains and genetic diversity within isolates of Mycoplasma bovis collected from clinical samples of bovine respiratory disease in Ireland and Scotland, and secondly, to provide a global phylogenetic context to these isolates. </p> <p>This archive contains associated Jupyter notebooks and metadata used in the analysis for the study.</p>
Fig. 5 in Peculiarities of Trypanosoma rangeli KP1(-) Strains Isolated from the Wild Rodent Phyllomys dasythrix (Santa Catarina, Brazil): Comparisons with T. rangeli KP1(+) strains and Trypanosoma lewisi (Kinetoplastea, Trypanosomatidae)
Fig. 5. kDNA minicircle amplicons presented by all KP1(+) and KP1(–) Trypanosoma rangeli strains examined in this study, and obtained by polymerase chain reaction using the primers 121/122. (M) molecular marker (100-bp DNA ladder).
Fig. 4 in Peculiarities of Trypanosoma rangeli KP1(-) Strains Isolated from the Wild Rodent Phyllomys dasythrix (Santa Catarina, Brazil): Comparisons with T. rangeli KP1(+) strains and Trypanosoma lewisi (Kinetoplastea, Trypanosomatidae)
Fig. 4. Isoenzyme profiles at IDH locus presented by KP1(+) and KP1(–) Trypanosoma rangeli strains and T. lewisi.
Fig. 3 in Peculiarities of Trypanosoma rangeli KP1(-) Strains Isolated from the Wild Rodent Phyllomys dasythrix (Santa Catarina, Brazil): Comparisons with T. rangeli KP1(+) strains and Trypanosoma lewisi (Kinetoplastea, Trypanosomatidae)
Fig. 3. Diagrammatic representation of the electrophoretic patterns of malate dehydrogenase (MDH), phosphoglucomutase (PGM), glucose phosphate isomerase (GPI) and malic enzyme (ME) displayed by KP1(–) and KP1(+) Trypanosoma rangeli strains, and T. lewisi.
Fig. 1 in Peculiarities of Trypanosoma rangeli KP1(-) Strains Isolated from the Wild Rodent Phyllomys dasythrix (Santa Catarina, Brazil): Comparisons with T. rangeli KP1(+) strains and Trypanosoma lewisi (Kinetoplastea, Trypanosomatidae)
Fig. 1. Camera lucida drawings of representative bloodstream trypomastigotes of Trypanosoma rangeli KP1(–) and KP1(+) strains from experimentally infected mice by metacyclic trypomastigotes grown in DMEM medium. The position of the nucleus in each trypomastigote is indicated by arrowheads. Parasites were from Giemsa-stained smears of each strain, as seen under optical microscopy (×1,000). In a trypomastigote of the strain SC-61 are indicated the reference points for taking measurements: anterior end (A), posterior end (P), nucleus (N) and free flagellum (F).
Fig. 2 in Peculiarities of Trypanosoma rangeli KP1(-) Strains Isolated from the Wild Rodent Phyllomys dasythrix (Santa Catarina, Brazil): Comparisons with T. rangeli KP1(+) strains and Trypanosoma lewisi (Kinetoplastea, Trypanosomatidae)
Fig. 2. Comparative growth in axenic cultures of Trypanosoma rangeli strains [KP1(–) and KP1(+)] and T. lewisi. Data (106 cells/μL) are the averages and the maximum growth from the values taken at the 4th, 7th, 10th, 13th, 17th and 20th days of cultivation in liver infusion-tryptose broth supplemented with 20% fetal calf serum (LIT-20) at 27.3 ± 0.4°C.
Fig. 3 in Cluster Analysis of Non-conserved Proteins of Trypanosoma cruzi Reference Strains Displays Parity between these Groupings (Peptidemes) and the Consensually Accepted Parasite Lineages
Fig. 3. Phenogram of the peptidemes (P) of eight Trypanosoma cruzi reference strains obtained using the SM coefficient and the UPGMA clustering algorithm, based on data from non-conserved proteins, as seen in SDS-PAGE analysis. The major peptidemes are indicated as mP 1 and mP 2. Their subgroups are identified on the right (P II, P VI, P I), and were numbered following their respective genetic types (TcII, TcVI, TcI), as currently used.
Fig. 1 in Cluster Analysis of Non-conserved Proteins of Trypanosoma cruzi Reference Strains Displays Parity between these Groupings (Peptidemes) and the Consensually Accepted Parasite Lineages
Fig. 1. Total protein profiles of eight Trypanosoma cruzi reference strains separated in 10% SDS-PAGE at 250 V, 25 mA, 90 min, and stained by Coomassie brilliant blue. The position of some conserved proteins is indicated on the right. M: molecular mass markers. (kDa) are indicated on the left.
Fig. 2 in Cluster Analysis of Non-conserved Proteins of Trypanosoma cruzi Reference Strains Displays Parity between these Groupings (Peptidemes) and the Consensually Accepted Parasite Lineages
Fig. 2. Diagrammatic representation of the twenty-two protein bands not shared by all Trypanosoma cruzi reference strains (nonconserved proteins), as visualized in SDS-PAGE. These bands were coded and analyzed by numerical taxonomy procedures. At the top is indicated the number of the major groups they belong, as identified by different approaches. The bands that were exclusive of one or more strains were highlighted with rectangles. M: molecular mass markers. (kDa) are indicated on the left.
Supplementary Data for Progressive Strain Localization with Structural Evolution of Faults and Implications for Earthquake Characteristics
<p>Fault slip measurements from geodetic imaging data (pixel offsets and InSAR) for 16 strike-slip earthquakes. </p> <p>Data columns are: Longitude, Latitude, Fault Slip (meters), 1-sigma uncertainty (meters)</p>
Figure 2 in Response of Rhizobacterial strains and organic amendments on chickpea growth
Figure 2. Soil organic matter as affected by Rhizobacterial strains. T: control. T: Enterobactor asburiae. T: Enterobacter mori. T: 1 2 3 4 rhizobiu ceceri. T5: Pesodomonas aeruginosa. T6: Pesodomonas putida.
Figure 1 in Response of Rhizobacterial strains and organic amendments on chickpea growth
Figure 1. Soil Nitrogen as affected by Rhizobacterial strains. T 1: control. T 2: Enterobactor asburiae. T 3: Enterobacter mori. T 4: rhizobiu ceceri. T 5: Pesodomonas aeruginosa. T: Pesodomonas putida.
Figure 1 in Decolorization of the benzidine-based azo dye Congo red by the new strain Shewanella xiamenensis G5-03
Figure 1. Neighbor-joining phylogenetic tree based on 16S rDNA gene sequences showing the relationships of strain G5-03 with other Shewanella species found in the GenBank. Numbers at nod shows the percentage of 1000 bootstrap replicates. The bar indicates 0.005 substitutions per nucleotide position.
Figure 5 in Decolorization of the benzidine-based azo dye Congo red by the new strain Shewanella xiamenensis G5-03
Figure 5. Changes in the concentration of benzidine during decolorization of CR by S. xiamenensis G5-03.
Figure 6 in Decolorization of the benzidine-based azo dye Congo red by the new strain Shewanella xiamenensis G5-03
Figure 6. Evolution of phytotoxicity (germination index) during the CR decolorization by S. xiamenensis G5-03.
Figure 2 in In vitro study of antimicrobial activity of some plant seeds against bacterial strains causing food poisoning diseases
Figure 2. MIC's of the effective plant seeds powder against S. aureus and K. pneumonia, ± standard error.
Illumina Sequencing Data for "Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes"
<p>Illumina Sequencing Data for Sulaiman et al., "Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes".</p>
Figure 1 in Characterization of glutamine synthetase from the ammonium-excreting strain HM053 of Azospirillum brasilense
Figure 1. Transferase activity of glutamine synthetase. (A) Transferase activity of wild-type glutamine synthetase in the absence and presence of magnesium as well as with snake venom phosphodiesterase treatment; (B) Transferase activity of P347L glutamine synthetase in the absence and presence of magnesium, and with snake venom phosphodiesterase treatment. The activity of GS is expressed in µmol γ-glutamyl-hydroxamate.min-1.mg protein-1, given that the absorbance of 530 nm of 1 µmolγ-glutamylhydroxamate was 0.054. The total activity was determined in the absence of Mg2+ (-Mg2+) and the non-adenylylated (active) fraction was determined in the presence of 60 mM Mg2+ (+Mg2+). Samples were incubated at 30 ºC for 0, 10, 30 and 60 min before measuring activity. SVP-treated GS samples (+ SVP) were incubated with snake venom phosphodiesterase. GS activity reactions contained 3 µg of protein.
Figure 3 in Characterization of glutamine synthetase from the ammonium-excreting strain HM053 of Azospirillum brasilense
Figure 3. Prediction of the structure of glutamine synthetase from the mutant P347L. (A) Prediction of the P347L-GS structure. The amino acid marked in pink corresponds to leucine in strain HM053; (B) b1) Prediction structure of wild-type GS from amino acid 346 to 361. b2) Prediction structure of P347L-GS from amino acid 346 to 361. b3) Alignment of prediction structures of wildtype GS and P347L GS from amino acid 346 to 361. The amino acid marked in blue corresponds to the proline that is mutated in strain HM053. The amino acid marked in pink is leucine that replaced proline in the mutated amino acid in strain HM053.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.