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1,918 results for “molecular evidence”
Figure 2 from: Walter HE, Cádiz-Véliz A, Meriño BM, Villalobos-Barrantes HM, Guerrero PC (2024) Taxonomic dissection based on molecular evidence of the Eriosyce curvispina complex (Cactaceae): identifying nine endemic species from Central Chile. PhytoKeys 237: 117-139. https://doi.org/10.3897/phytokeys.237.107403
Figure 2 Phylogenetic position of putative members of the Eriosyce curvispina species complex. All sections of Eriosyce are collapsed, except for the Eriosyce section Horridocactus.
Figure 1 from: Walter HE, Cádiz-Véliz A, Meriño BM, Villalobos-Barrantes HM, Guerrero PC (2024) Taxonomic dissection based on molecular evidence of the Eriosyce curvispina complex (Cactaceae): identifying nine endemic species from Central Chile. PhytoKeys 237: 117-139. https://doi.org/10.3897/phytokeys.237.107403
Figure 1 Locations of samples used in the study ascribed to the Eriosyce curvispina complex included in phylogenetic inferences.
Figure 3 from: Walter HE, Cádiz-Véliz A, Meriño BM, Villalobos-Barrantes HM, Guerrero PC (2024) Taxonomic dissection based on molecular evidence of the Eriosyce curvispina complex (Cactaceae): identifying nine endemic species from Central Chile. PhytoKeys 237: 117-139. https://doi.org/10.3897/phytokeys.237.107403
Figure 3 Species of Eriosyce curvispina complex AE. aconcaguensisBE. andicolaCE. choapensisDE. curvispinaEE. grandifloraFE. horridaGE. mutabilisHE. orientalisIE. robusta. Photographs: Arón Cádiz-Véliz (A, B, F), Pablo Guerrero (C, D, G), Joaquín Keymer (E), Heidy Villalobos-Barrantes (H), Griselle Guerrero (I).
Figure 3 from: Yi X, Dong J, Chen J, Zhou H, Wu T, Gao S, Chen X, LI M, Wang X (2024) Molecular and morphological evidence support a new species of Rosaceae Prunus subg. Cerasus from Wuyishan National Park, southeast China. PhytoKeys 237: 269-279. https://doi.org/10.3897/phytokeys.237.115098
Figure 3 Prunus tongmuensis X.G.Yi & X.R.Wang A flowering branch B fruiting branch C flower D fruit E pistil and stamen F petal G sepal H bract I involucral bract J leaf apex K two glands at the base of leaf L teeth.
Figure 1 from: Yi X, Dong J, Chen J, Zhou H, Wu T, Gao S, Chen X, LI M, Wang X (2024) Molecular and morphological evidence support a new species of Rosaceae Prunus subg. Cerasus from Wuyishan National Park, southeast China. PhytoKeys 237: 269-279. https://doi.org/10.3897/phytokeys.237.115098
Figure 1 Maximum Likelihood (ML) tree (A) and Bayesian inference (BI) tree (B) of cherry blossom inferred from the plastid genome. The numbers associated with branches are maximum likelihood bootstrap (MLBS) values of A and Bayesian posterior probabilities (PP) of B.
Figure 4 from: Yi X, Dong J, Chen J, Zhou H, Wu T, Gao S, Chen X, LI M, Wang X (2024) Molecular and morphological evidence support a new species of Rosaceae Prunus subg. Cerasus from Wuyishan National Park, southeast China. PhytoKeys 237: 269-279. https://doi.org/10.3897/phytokeys.237.115098
Figure 4 Prunus tongmuensis X.G.Yi et X. R.Wang A habitat B–G flowering branch H pollen grain I, J leaves K fruiting branch L young fruit branch M dark purple fruits.
Supplementary material 2 from: Gaudeul M, Sweeney P, Munzinger J (2024) An updated infrageneric classification of the pantropical species-rich genus Garcinia L. (Clusiaceae) and some insights into the systematics of New Caledonian species, based on molecular and morphological evidence. PhytoKeys 239: 73-105. https://doi.org/10.3897/phytokeys.239.112563
Molecular phylogeny of Garcinia L. based on psbM-trnD and Bayesian inference
Figure 1 from: Gaudeul M, Sweeney P, Munzinger J (2024) An updated infrageneric classification of the pantropical species-rich genus Garcinia L. (Clusiaceae) and some insights into the systematics of New Caledonian species, based on molecular and morphological evidence. PhytoKeys 239: 73-105. https://doi.org/10.3897/phytokeys.239.112563
Figure 1 Some Garcinia New Caledonian species (except E from Fiji) and morphological features AG. balansae (Munzinger 4916), fruiting branch BG. balansae (Munzinger 4916), bark CG. sp. "JT814" (Munzinger 7282), habit DG. sp. "JT814" (Munzinger 7282), bark EG. vitiensis (Munzinger 7377), fruiting branch FG. neglecta (Munzinger 2690), fruit GG. comptonii (sin voucher), fruit.
Figure 3 from: Gaudeul M, Sweeney P, Munzinger J (2024) An updated infrageneric classification of the pantropical species-rich genus Garcinia L. (Clusiaceae) and some insights into the systematics of New Caledonian species, based on molecular and morphological evidence. PhytoKeys 239: 73-105. https://doi.org/10.3897/phytokeys.239.112563
Figure 3 Molecular phylogeny of Garcinia L. based on a combined chloroplast DNA dataset and Bayesian inference. Posterior probabilities (PP) and bootstrap support values (BS), obtained respectively by the Bayesian inference and Maximum Likelihood (ML) analysis, are indicated at each node of the cladogram. Nodes were collapsed when PP < 0.50. The lineages/sections discussed in the text are highlighted, and species names appear in colors depending on their native distribution areas: light green, Tropical Africa; dark green, Madagascar and Western Indian Ocean islands; grey, Southeast Asia; purple, Australia; orange, New Guinea; red, New Caledonia; dark blue, Southwest Pacific islands. Distribution information was taken from the Plants of the World Online website (POWO 2023; also see the table of vouchers). A few species occur in several regions, and the color of the main (largest) region was used. All accessions were newly sequenced in this study.
Supplementary material 1 from: Gaudeul M, Sweeney P, Munzinger J (2024) An updated infrageneric classification of the pantropical species-rich genus Garcinia L. (Clusiaceae) and some insights into the systematics of New Caledonian species, based on molecular and morphological evidence. PhytoKeys 239: 73-105. https://doi.org/10.3897/phytokeys.239.112563
List of taxa and accessions used in this study
Figure 2 from: Gaudeul M, Sweeney P, Munzinger J (2024) An updated infrageneric classification of the pantropical species-rich genus Garcinia L. (Clusiaceae) and some insights into the systematics of New Caledonian species, based on molecular and morphological evidence. PhytoKeys 239: 73-105. https://doi.org/10.3897/phytokeys.239.112563
Figure 2 Molecular phylogeny of Garcinia L. based on ITS sequences and Bayesian inference. Posterior probabilities (PP) and bootstrap support values (BS), obtained respectively by the Bayesian inference and Maximum Likelihood (ML) analysis, are indicated at each node of the cladogram. Nodes were collapsed when PP < 0.50. The lineages/sections discussed in the text are highlighted, and species names appear in colors depending on their native distribution areas: light blue, Central and South America; light green, Tropical Africa; dark green, Madagascar and Western Indian Ocean islands; grey, Southeast Asia; purple, Australia; orange, New Guinea; red, New Caledonia; dark blue, Southwest Pacific islands. Distribution information was taken from the Plants of the World Online website (POWO 2023; also see the table of vouchers). A few species occur in several regions, and the color of the main (largest) geographic region was used. Accessions in bold were newly sequenced in this study.
Supplementary material 4 from: Gaudeul M, Sweeney P, Munzinger J (2024) An updated infrageneric classification of the pantropical species-rich genus Garcinia L. (Clusiaceae) and some insights into the systematics of New Caledonian species, based on molecular and morphological evidence. PhytoKeys 239: 73-105. https://doi.org/10.3897/phytokeys.239.112563
Molecular phylogeny of Garcinia L. based on rps16-trnK and Bayesian inference
Supplementary material 3 from: Gaudeul M, Sweeney P, Munzinger J (2024) An updated infrageneric classification of the pantropical species-rich genus Garcinia L. (Clusiaceae) and some insights into the systematics of New Caledonian species, based on molecular and morphological evidence. PhytoKeys 239: 73-105. https://doi.org/10.3897/phytokeys.239.112563
Molecular phylogeny of Garcinia L. based on trnQ-rps16 and Bayesian inference
Supplementary material 2 from: Wang L-H, Li S, Zhang D-N, Liu Q-R (2024) A new combination and synonym in Bupleurum (Apiaceae, Apioideae), based on morphological, molecular and cytological evidence. PhytoKeys 239: 239-253. https://doi.org/10.3897/phytokeys.239.116877
Traits selected for subsequent principal component and cluster analysis after the first PGA
Figure 4 from: Wang L-H, Li S, Zhang D-N, Liu Q-R (2024) A new combination and synonym in Bupleurum (Apiaceae, Apioideae), based on morphological, molecular and cytological evidence. PhytoKeys 239: 239-253. https://doi.org/10.3897/phytokeys.239.116877
Figure 4 Cluster plot for the morphological variations among four taxa. C = Bupleurum commelynoideum var. commelynoideumF = B. commelynoideum var. flaviflorumP = B. smithii var. parvifoliumS = B. smithii var. smithii.
Figure 3 from: Wang L-H, Li S, Zhang D-N, Liu Q-R (2024) A new combination and synonym in Bupleurum (Apiaceae, Apioideae), based on morphological, molecular and cytological evidence. PhytoKeys 239: 239-253. https://doi.org/10.3897/phytokeys.239.116877
Figure 3 Fruit morphology ABupleurum smithii var. smithiiBB. smithii var. auriculatumCB. smithii var. parvifoliumDB. commelynoideum var. flaviflorum
Figure 2 from: Wang L-H, Li S, Zhang D-N, Liu Q-R (2024) A new combination and synonym in Bupleurum (Apiaceae, Apioideae), based on morphological, molecular and cytological evidence. PhytoKeys 239: 239-253. https://doi.org/10.3897/phytokeys.239.116877
Figure 2 Umbel and bract ABupleurum smithii var. smithiiBB. smithii var. parvifoliumCB. commelynoideum var. flaviflorumDB. commelynoideum var. commelynoideum.
Figure 1 from: Wang L-H, Li S, Zhang D-N, Liu Q-R (2024) A new combination and synonym in Bupleurum (Apiaceae, Apioideae), based on morphological, molecular and cytological evidence. PhytoKeys 239: 239-253. https://doi.org/10.3897/phytokeys.239.116877
Figure 1 Comparison of the characters A width of middle leaves B width of bracteoles C length of bracteoles D number of rays. BS = Bupleurum smithii var. smithiiBP = B. smithii var. parvifoliumBF = B. commelynoideum var. flaviflorumBC = B. commelynoideum var. commelynoideum.
Supplementary material 1 from: Wang L-H, Li S, Zhang D-N, Liu Q-R (2024) A new combination and synonym in Bupleurum (Apiaceae, Apioideae), based on morphological, molecular and cytological evidence. PhytoKeys 239: 239-253. https://doi.org/10.3897/phytokeys.239.116877
Specimens for measurements and initial measurements of traits data
Figure 7 from: Wang L-H, Li S, Zhang D-N, Liu Q-R (2024) A new combination and synonym in Bupleurum (Apiaceae, Apioideae), based on morphological, molecular and cytological evidence. PhytoKeys 239: 239-253. https://doi.org/10.3897/phytokeys.239.116877
Figure 7 Distribution area based on specimen records and our field investigation ABupleurum smithii var. smithiiBB. smithii var. parvifoliumCB. commelynoideum var. flaviflorumDB. commelynoideum var. commelynoideum
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.