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3,109
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ShareScore release 0.9.0
Dataset results
3,109 results for “sequence analysis”
SARS-CoV-2 vs. Homo sapiens BLASTP protein sequence analysis results
<p>SARS-CoV-2 vs. Homo sapiens BLASTP protein sequence analysis results</p>
Giant panda metagenomic sequencing analysis table
<p>Giant panda metagenomic sequencing function analysis table</p>
Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequenc-ing data analysis
<p>Allen institute 10X mouse data (<a href="https://portal.brain-map.org/atlases-and-data/rnaseq/mouse-whole-cortex-and-hippocampus-10x">https://portal.brain-map.org/atlases-and-data/rnaseq/mouse-whole-cortex-and-hippocampus-10x</a>) converted into h5 format including metadata, to be easily uploaded in Cytosplore-Transcriptomics.</p>
Figure 3 from: Shan W, Tursun M, Zhou S, Zhang Y, Dai H (2021) Complete mitochondrial genome sequence of Lepus yarkandensis Günther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis. ZooKeys 1012: 135-150. https://doi.org/10.3897/zookeys.1012.59035
Figure 3 Evolutionary rates of the Lepus yarkandensis mitogenome by Ka/Ks.
Figure 2 from: Shan W, Tursun M, Zhou S, Zhang Y, Dai H (2021) Complete mitochondrial genome sequence of Lepus yarkandensis Günther, 1875 (Lagomorpha, Leporidae): characterization and phylogenetic analysis. ZooKeys 1012: 135-150. https://doi.org/10.3897/zookeys.1012.59035
Figure 2 GC and AT skews for mitochondrial PCGs in Lepus yarkandensis.
Data from: Multiplex PCR targeting lineage specific SNPs ‐ A highly efficient and simple approach to block out predator sequences in molecular gut content analysis
Background: Food webs form the basis of biological communities, though empirical research has been hindered by difficulties in quantifying interactions. Metabarcoding from predator gut content extractions with universal primers promises to provide simple and rapid insights into food web interactions. However, the highly overabundant predator DNA often completely outcompetes that of the digested prey DNA during PCR, impeding the ability to assess the abundance and diversity of prey items. Methods: Focusing on the issue of overabundance of predator DNA amplified by a commonly used COI primer pair, we use predator lineage-specific SNPs at the 3'-end of PCR primers to selectively block out predators from amplification. While this approach largely prevents predator amplification, it retains high taxonomic versatility for prey lineages. We introduce a novel multilocus assay, targeting four nuclear and mitochondrial rDNA markers and test our approach in a diverse set of spiders from 12 families. We estimate the recovered prey DNA proportions and compare the taxonomic composition of prey communities between markers. Using a feeding experiment, we also explore recovery of prey DNA over time. Results: While commonly used COI primers yield low and very unpredictable amounts of prey DNA, our assay allows for a considerable and consistent prey enrichment across all tested species. The recovered prey's taxonomic composition is comparable between markers and supports results acquired by COI. The new marker set can be amplified in a simple multiplex PCR, considerably reducing the necessary workload. Conclusions: Our multi-locus approach allows the generation of an unprecedented amount of prey data at low cost and effort. Lineage specific PCR is taxonomically versatile and could readily be adapted to any prey-predator interaction, opening up the opportunity for community-wide studies on food web interactions.
LotuS2: An ultrafast and highly accurate tool for amplicon sequencing analysis
<p>Amplicon sequencing is an established and cost-efficient method for profiling microbiomes. However, many available tools to process this data require both bioinformatics skills and high computational power to process big datasets. Furthermore, there are only few tools that allow for long read amplicon data analysis. To bridge this gap, we developed the LotuS2 (Less OTU Scripts 2) pipeline, enabling user-friendly, resource friendly, and versatile analysis of raw amplicon sequences.</p>
Figure 1 from: Anslan S, Nilsson RH, Wurzbacher C, Baldrian P, Tedersoo L, Bahram M (2018) Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding. MycoKeys 39: 29-40. https://doi.org/10.3897/mycokeys.39.28109
Figure 1 - Outline of workflow in different analysis pipelines.
Joint analysis of single-cell RNA sequencing and bulk transcriptome reveals the heterogeneity of the urea cycle of astrocytes in glioblastoma
Open the record for dataset details and reuse information.
Analysis of Deoxyribonucleic Acid and Ribonucleic Acid Next-Generation Sequencing in Non-Small Cell Lung Cancer Patients Without Pathological Complete Response Following Neoadjuvant Immunotherapy
ClinicalTrials.gov study NCT07179445. IPD Sharing: NO. Countries: 1. Publications: 0.
Early Assessment of Lymphoma Treatment Response Using Phased Variant Analysis With Next-Generation Sequencing
ClinicalTrials.gov study NCT06550427. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Study of the Diagnostic Value of "Rapid" High Throughput Genome Sequencing Analysis in Diagnostic Emergency Situations
ClinicalTrials.gov study NCT03956069. IPD Sharing: Not stated. Countries: 1. Publications: 0.
RNA Sequencing Analysis in Large Vessel Occlusion Stroke DATA Bank
ClinicalTrials.gov study NCT03490552. IPD Sharing: Not stated. Countries: 1. Publications: 0.
A Study on the Prevalence of Clinically Useful Mutations in Solid Tumor Characterized by Next Generation Sequencing Methods on Liquid Biopsy Analysis (POPCORN)
ClinicalTrials.gov study NCT06028724. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Transcriptomic Analysis of Incisional Hernia Based on High-throughput Sequencing Technology
ClinicalTrials.gov study NCT06366581. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Use of Exome Sequence Analysis and Circulating Tumour in Assessing Tumour Heterogeneity in BRAF Mutant Melanoma
ClinicalTrials.gov study NCT02251314. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Diagnostic Value of Next-Generation Sequencing Analysis in Biliary Tract Tumours
ClinicalTrials.gov study NCT06729944. IPD Sharing: NO. Countries: 1. Publications: 0.
Analysis of Therapy Sequence in Women With HR+, HER2 - mBC in Moscow: A Multicenter Retrospective Observational Study.
ClinicalTrials.gov study NCT04852081. IPD Sharing: NO. Countries: 1. Publications: 0.
Single-Cell Sequencing Analysis of Radiation Pneumonitis Signals In Patients Treated For Cancer With Radiotherapy
ClinicalTrials.gov study NCT06557343. IPD Sharing: NO. Countries: 1. Publications: 0.
Single Cell Sequencing Analysis of Thymoma
ClinicalTrials.gov study NCT04162691. IPD Sharing: NO. Countries: 1. Publications: 0.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.