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1,696 results for “DNA sequence”
SouthAfrica_microbiome_2024: IMTA lab data: metadata encompassing DNA 16sRNA sequencing data
<p><span>Global DNA metadata with sample ID codes and decription of samples </span></p> <p><span>ASV_table. ASV read count table after normalization (2,500 counts per sample). </span></p> <p><span>Taxonomy table from each ASV-sample found</span></p>
Brasil_microbiome_2024: IMTA lab data: metadata encompassing DNA 16sRNA sequencing data
<p><span>Global DNA metadata with sample ID codes and decription of samples </span></p> <p><span> ASV_table. ASV read count table after normalization (2,500 counts per sample). </span></p> <p><span> Taxonomy table from each ASV-sample found</span></p>
FIGURE 1 in Association of larvae and adults of Mexican species of Macrelmis (Coleoptera: Elmidae): a preliminary analysis using DNA sequences
FIGURE 1. Strict consensus cladogram obtained. The numbers on the nodes indicate the results of symmetrical resampling.
FIGURE 4 in Identification and molecular phylogeny of agriculturally important spider mites (Acari: Tetranychidae) based on mitochondrial and nuclear ribosomal DNA sequences, with an emphasis on Tetranychus
FIGURE 4. ML tree based on ITS1 sequences. Sequence data for the ITS1 was aligned from a total of 23 individuals from nine species. The outgroups Neoseiulus swirskii and Typhlodromus pyri (GenBank nos. EU310505 and FM179376, respectively) were used to root the ITS1 tree. Numbers on the branches indicate the percentage bootstrap values (>50) based on NJ bootstrapping with ML settings (1,000 replicates).
FIGURE 3 in Identification and molecular phylogeny of agriculturally important spider mites (Acari: Tetranychidae) based on mitochondrial and nuclear ribosomal DNA sequences, with an emphasis on Tetranychus
FIGURE 3. Neighbor-joining (NJ) tree (a) and maximum likelihood (ML) tree (b) based on COI sequences. Twentythree of the COI sequences were obtained from the nine Chinese tetranychid species analyzed in this study. In addition, thirteen acarine COI sequences were obtained from the GenBank: the COI sequence (GenBank nos. DQ789590 and AY320029) from Brevipalpus obovatus and Cenopalpus pulcher were used as outgroups; the other COI sequences Tetranychus truncatus, T. turkestani, T. piercei, T. neocaledonicus, Panonychus citri, Pa. ulmi, Pa. mori, Amphitetranychus viennensis, A. quercivorus, Petrobia harti and P. tunisiae (GenBank nos. AB257317, AJ316604, AB257314, X80859, AB041252, AB041253, AB041256, X99875, X99873, EU487121 and EU487119 respectively) from GenBank also included into our phylogenetic analysis. Numbers adjacent to branches show the bootstrap values (> 50%) of 1000 replicates.
Figure 38–40 in DNA sequences corroborate Soesiladeepakius as a non-salticoid genus of jumping spiders: placement with lapsiines, phylogeny, and description of six new species (Araneae, Salticidae)
Figure 38–40. Soesiladeepakius uncinatus sp. nov. 38, left male palp, bulb, ventral view. 39, retrolateral view. 40, left male palp, retrolateral view.
Figure 10–15 in DNA sequences corroborate Soesiladeepakius as a non-salticoid genus of jumping spiders: placement with lapsiines, phylogeny, and description of six new species (Araneae, Salticidae)
Figure 10–15. Soesiladeepakius lyra sp. nov. 10, left male palp, ventral view. 11, retrolateral view. 12, bulb, clarified, ventral view. 13, prolateral view. 14, female epigyne, ventral view. 15, dorsal view, clarified. ma?, putative median apophysis.
FIG. 10 in New records, neotype designation and DNA sequences of three species of Chaetonotus (Gastrotricha: Chaetonotidae) from Brazil
FIG. 10. Chaetonotus furcatus, light microscopy photomicrographs (DIC). A. Dorsal view of the anterior region, B. Detail of the spined scales in the anterior dorsal region, C. Detail of the pharynx, lateral view, D. Ventral view of the posterior ventral end. Asc: Anterior scales, Ce: Cephalion, Epi: Epipleura, Hyp: Hypopleura, Ks: Keeled scale, Pha: Pharynx, Si: Spines, St: Dorsal trunk spined scales, Vs: Ventral scales. Scale bars: A–D, 20 μm.
FIG. 6. Chaetonotus dadayi, SEM photos. A in New records, neotype designation and DNA sequences of three species of Chaetonotus (Gastrotricha: Chaetonotidae) from Brazil
FIG. 6. Chaetonotus dadayi, SEM photos. A. Dorsal view of the body - habitus, B. Dorsal view of the anterior region, C. Dorsal view of the middle trunk. D, E. Detail of the dorsal denticulate spined scales, F. Detail of furca base, dorsal view. G. Detail of furca base, ventral view. As: Anterior spines, De: Denticle, Si: Spines, St: Dorsal spined scales, Shs: Short spines. Scale bars: A, 40 μm; B, 30 μm; C, 20 μm; D–F, 10 μm; G, 8 μm.
FIG. 13. Chaetonotus furcatus Kisielewski, 1991 in New records, neotype designation and DNA sequences of three species of Chaetonotus (Gastrotricha: Chaetonotidae) from Brazil
FIG. 13. Chaetonotus furcatus Kisielewski, 1991, schematic illustration. Ventral view of the ventral posterior end, with ventrolateral spined scales and interciliary keeled scales. Scale bar: 20 μm.
FIG. 5. Chaetonotus dadayi, SEM photos. A in New records, neotype designation and DNA sequences of three species of Chaetonotus (Gastrotricha: Chaetonotidae) from Brazil
FIG. 5. Chaetonotus dadayi, SEM photos. A. Dorsal view of the body - habitus, B. Lateral view of the body, C. Dorsal view of the head region, D, F. Ventral view of the posterior end, E. Ventral view of the anterior region. Ad: Adhesive tube, Ce: Cephalion, De: Denticle, Ds: Dorsal spines, Fs: Furcal spines, Mo: Mouth ring, Pts: Paired terminal scales. Scale bars: A–B, 40 μm; C–D, 10 μm; E, 15 μm; F, 30 μm.
FIGURE 2 in A note on the identity of the spikenard (Nardostachys jatamansi, Caprifoliaceae) based on DNA sequence data
FIGURE 2. Sequence alignment data matrixes and unrooted MP tree. a, portions of the alignment matrixes of the rbcL (top panel) and matK (bottom panel) genes showing the variable nucleotide sites. Numbers at the top indicate nucleotide sites. Dots represent nucleotide sequence stretches of varying lengths. Asterisks represented below nucleotide base indicate identity. Numbers within parentheses following species name indicate GenBank accession numbers (the ones in bold represent accession numbers for sequences generated in the present study). b, unrooted MP tree of the ITS region demonstrating the genetic relatedness among the representatives of the genus Nardostachys included in the present study. Numbers on node denote bootstrap values.
Transposon DNA sequences facilitate the tissue-specific horizontal transfer of circulating tumor DNA between human cells
<p>The uploaded files are in the fasta format and are outputs from de novo assembly using the SGA algorithm (https://github.com/jts/sga). The description of the files are as below:</p> <table> <tbody> <tr> <td><strong>Filename</strong></td> <td><strong>description</strong></td> </tr> <tr> <td>772.final.fa</td> <td>Multiple Myeloma ctDNA</td> </tr> <tr> <td>54128-4M7.final.fa</td> <td>Pancreatic cancer cells coculture with multiple myeloma ctDNA</td> </tr> <tr> <td>54128-6MP.final.fa</td> <td>Multiple myeloma cells coculture with pancreatic cancer ctDNA</td> </tr> <tr> <td>MIA-Cells.final.fa</td> <td>Pancreatic cancer cells</td> </tr> <tr> <td>MIA-cells-with-P201812-2.final.fa</td> <td>Pancreatic cancer cells coculture with pancreatic cancer ctDNA</td> </tr> <tr> <td>MM1S-cells.final.fa</td> <td>Multiple Myeloma cells</td> </tr> <tr> <td>MM1S-cells-with-772-2.final.fa</td> <td>Mutiple myeloma cells coculture with Multiple myeloma ctDNA</td> </tr> <tr> <td>P201812-2.final.fa</td> <td>Pancreatic Cancer ctDNA</td> </tr> </tbody> </table>
Prenatal Cell-free DNA Screening in Pregnancies With Diverse Genetic Risk Profiles Utilizing Targeted and Whole-exome Sequencing
ClinicalTrials.gov study NCT07106853. IPD Sharing: YES. Countries: 0. Publications: 0.
Cell Free DNA and Its Integrity Using ALU Sequences as a Biomarker for Diagnosis of Breast Cancer
ClinicalTrials.gov study NCT03474016. IPD Sharing: Not stated. Countries: 0. Publications: 0.
Evolutionary adaptation of the chromodomain of the HP1 protein Rhino allows th eintegration of heterochromatin and DNA sequence signals
GEO Series GSE244196. Drosophila melanogaster. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
Using DNA Affinity Purification sequencing (DAP-seq) to identify in vitro binding sites of transcription factors potentially involved in aromatic degradation
GEO Series GSE291618. Novosphingobium aromaticivorans. 48 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Multiplexed DNA Affinity purification sequencing (multiDAP-seq) of flowering plants [Arabidopsis thaliana]
GEO Series GSE298983. Arabidopsis thaliana. 794 samples. Type: Other.
Genome wide DNA methylation sequencing by XmaI-RRBS resolves breast cancer epigenetic heterogeneity and suggests novel perspectives for personalized therapy
GEO Series GSE122799. Homo sapiens. 118 samples. Type: Methylation profiling by high throughput sequencing.
Human SETMAR is a DNA sequence-specific histone-methylase with a broad effect on the transcriptome
GEO Series GSE108773. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.