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Figure 4 in Two new decapod (Crustacea: Malacostraca) complete mitochondrial genomes: bearings on the phylogenetic relationships within the Decapoda
Figure 4. Phylogenetic analyses of the nucleotide sequence (A) and amino acid datasets (B) derived from the Decapoda using the maximum likelihood (ML) analyses and Bayesian inferences (BI), respectively. Bayesian posterior probability (BPP) and bootstrap support (BP) of each node are denoted by the asterisk indicating the well-supported values (BPP = 1.00 and simultaneously BP> 90), or otherwise are presented directly. The phylogram shown is from BI except that the a' clade was based on amino acid datasets from ML analyses. Scale bars represent 0.1 mutations per site.
The complete mitochondrial genome of Argania spinosa
<p>This repository contains the shared data of the mitochondrial genome report of <i>Argania spinosa</i></p>
Figure 2 in Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)
Figure 2. Visualisation of assembled mitochondrial genome of Domecia acanthophora. Photo by Yun Scholten.
Figure 1 in Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)
Figure 1. Repetitive elements in the genome of Domecia acanthophora. Each bar corresponds to a different type of annotated cluster. Numbers between parentheses in the legend represent the total number of annotated clusters in that category.
Figure 4 in Genomic survey sequencing and complete mitochondrial genome of the elkhorn coral crab Domecia acanthophora (Desbonne in Desbonne & Schramm, 1867) (Decapoda: Brachyura: Domeciidae)
Figure 4. Mitochondrial gene order (MGO) of Domecia acanthophora compared to that of the brachyuran basic gene order, with the two transposition events highlighted.
Data and code for: The complete Kaposi Sarcoma-associated herpesvirus genome induces early-onset, metastatic angiosarcoma in transgenic mice
Open the record for dataset details and reuse information.
FIGURE 13. A in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 13. A phylogenetic tree obtained from Bayesian inference analysis based on 13 protein-coding genes.
FIGURE 1 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 1. Anelytra (Lichnofugia) symfioma (Ingrisch, 1998). Male: A. head in frontal view; B. fastigium verticis in frontal view; C–D. head and pronotum: C. dorsal view, D. lateral view; E–G. apex of abdomen: E. lateral view, F. dorsal view, G. dorso-apical view; H. subgenital plate in ventral view; I. fore left tibiae in dorsal view.
FIGURE 4 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 4. Habitus of Anelytra (Lichnofugia) symfioma (Ingrisch, 1998), lateral view. A–B. male; C–D. female.
FIGURE 11. Palaeoagraecia brunnea Ingrisch, 1998 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 11. Palaeoagraecia brunnea Ingrisch, 1998. Female: A. head in frontal view; B–C. head and pronotum: B. dorsal view, C. lateral view; D. processes of thoraces in ventral view; E. apex of abdomen in lateral view; G. subgenital plate in ventral view; H. apices of ovipositor in lateral view.
FIGURE 8 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 8. Liara (Liara) shii Liu & Bian sp. nov. Female: A. head, pronotum and tegmina in lateral view; B–C. apex of abdomen: B. lateral view, C. dorsal view; D. fore tibiae in dorsal view; E–F. genicular lobes of hind leg: E. external view, F. internal view.
FIGURE 7 in New additions to the Chinese Agraeciini Redtenbacher, 1891 (Orthoptera, Tettigoniidae: Conocephalinae) with report the complete mitochondrial genome of Palaeoagraecia brunnea Ingrisch, 1998
FIGURE 7. Liara (Liara) shii Liu & Bian sp. nov. Female: A. head in frontal view; B. fastigium verticis in frontal view; C. head and pronotum in dorsal view; D. head, pronotum and tegmina in dorsal view; E. head and thoraces in ventral view; F. subgenital plate in ventral view.
Complete Genome Sequence of an Aeromonas rivuli Strain Isolated from Ready-to-Eat Food - Data Files
<p>This dataset contains input and intermediate files of the bcgTree analysis described in the Schwartz <em>et al</em>. MRA manuscript entitled “Complete Genome Sequence of an <em>Aeromonas rivuli</em> Strain Isolated from Ready-to-Eat Food”.</p> <table> <tbody> <tr> <td> <p><strong>File name</strong></p> </td> <td> <p><strong>Description</strong></p> </td> </tr> <tr> <td> <p>‘<em>Aeromonadaceae</em> identifier’.fa</p> </td> <td> <p>Amino acid FASTA file of the translated CDS sequences of a strain X (bcgTree input file)</p> </td> </tr> <tr> <td> <p>full_alignment.concat.fa</p> </td> <td> <p>Alignment of the concatenated amino acid sequences of 107 single-copy core genes that is used for phylogenetic tree calculation in bcgTree (bcgTree intermediate file)</p> </td> </tr> </tbody> </table> <p> </p> <p>In the bcgTree files, the <em>Aeromonadaceae</em> sequences were named/abbreviated as follows:</p> <table> <tbody> <tr> <td> <p><strong>Sequence name in the bcgTree file</strong></p> </td> <td> <p><strong>Description</strong></p> </td> </tr> <tr> <td> <p>AAZUK01-1</p> </td> <td> <p><em>Tolumonas lignilytica </em>BRL6-1</p> </td> </tr> <tr> <td> <p>Aeromonas-caviae</p> </td> <td> <p><em>Aeromonas caviae </em>NCTC 12244</p> </td> </tr> <tr> <td> <p>Aeromonas-dhakensis</p> </td> <td> <p><em>Aeromonas dhakensis </em>CIP 107500</p> </td> </tr> <tr> <td> <p>Aeromonas-hydrophila</p> </td> <td> <p><em>Aeromonas hydrophila </em>ATCC 7966</p> </td> </tr> <tr> <td> <p>Aeromonas-rivuli</p> </td> <td> <p><em>Aeromonas rivuli </em>DSM 22539</p> </td> </tr> <tr> <td> <p>Aeromonas-rivuli-20-VB00005</p> </td> <td> <p><em>Aeromonas rivuli </em>20-VB00005</p> </td> </tr> <tr> <td> <p>Aeromonas-veronii</p> </td> <td> <p><em>Aeromonas veronii </em>CECT 4257</p> </td> </tr> <tr> <td> <p>CP001616-1</p> </td> <td> <p><em>Tolumonas auensis </em>DSM 9187</p> </td> </tr> <tr> <td> <p>JACHGR01-1</p> </td> <td> <p><em>Tolumonas osonensis </em>DSM 22975</p> </td> </tr> </tbody> </table>
FIGURE 4 in Indocalamus chongzhouensis (Poaceae: Bambusoideae), a new synonym of I. emeiensis: evidence from morphology and complete chloroplast genome data
FIGURE 4. Micromophology of leaf abaxial epidermis under SEM. A–D. Indocalamus chongzhouensis (Chongzhou, Sichuan, China); E–H. I. emeiensis (E'mei, Sichuan, China). Abbreviations: ep, elongated papillae; sp, short papillae; mi, microhairs; sb, silica bodies; pr, prickles. (Scale bars = 5 μm [B, D, F & H]; 10 μm [C & G]; 50 μm [A & E]).
FIGURE 3 in Indocalamus chongzhouensis (Poaceae: Bambusoideae), a new synonym of I. emeiensis: evidence from morphology and complete chloroplast genome data
FIGURE 3. Morphological comparison between Indocalamus chongzhouensis (A–F) and I. emeiensis (G–L). A and G. Part of young culm, showing white-powdery and hirsute infranodal region; B and H. Culm sheath; C and I. Sheath auricle and oral setae; D and J. Branching node; E and K. Longitudinal section of branching node; F and L. part of ultimate leafy branch, showing leaf sheath, auricles, and oral setae. (Scale bars=1 cm).
FIGURE 1. Indocalamus chongzhouensis. A in Indocalamus chongzhouensis (Poaceae: Bambusoideae), a new synonym of I. emeiensis: evidence from morphology and complete chloroplast genome data
FIGURE 1. Indocalamus chongzhouensis. A. Syntype (Yi 03014, SIFS); B. Culm sheath; C. Leaf sheath, auricles and oral setae; D. Sheath auricles, oral setae and the base of sheath blade; E. Culm sheath, sheath auricle and oral setae. (Scale bars=1 cm).
FIGURE 6. Indocalamus emeiensis. A and B in Indocalamus chongzhouensis (Poaceae: Bambusoideae), a new synonym of I. emeiensis: evidence from morphology and complete chloroplast genome data
FIGURE 6. Indocalamus emeiensis. A and B. Habitat and habit; C and D. Rhizome and new shoot; E. Apex of new shoot, showing sheath auricle, oral setae and ligule; F. Infranodal region of young culm; G–J. Culm sheath; K. Part of ultimate leafy branch, showing leaf auricle and oral setae; L. Branching node; M. Longitudinal section of branching node. (Scale bars=1 m [A & B]; 1 cm [C–M]).
FIGURE 5 in Indocalamus chongzhouensis (Poaceae: Bambusoideae), a new synonym of I. emeiensis: evidence from morphology and complete chloroplast genome data
FIGURE 5. Phylogeny of Arundinarieae inferred from maximum likelihood (ML) analysis based on complete chloroplast genomes of 44 representative bamboos. Colored branches indicate 11 accepted lineages of Arundinarieae (I–XI). Numbers associated with branches indicate the bootstrap value and the posterior probability, respectively. Asterisks indicate 100% bootstrap support or 1.0 posterior probability. Hyphens indicate the bootstrap support or the posterior probability lower than 50% or 0.5.
The first complete mitochondrial genome in the family Attevidae (Atteva aurea) of the order Lepidoptera
<p><strong>Figure 1. </strong>Four tandem repeat units found between <em>trnG</em> and <em>trnA </em>with various copy numbers (A1–A4, B1–B3, C1–C12, and D1–D2). The nucleotide position is indicated at each end of the sequence in relation to the mitochondrial genome of <em>Atteva aurea</em>.</p> <p><strong>Figure 2</strong>. Linear arrangement of<strong> </strong>the mitochondrial genome of <em>A. aurea</em>. Gene sizes are not drawn to scale. Non-underlined and underlined gene names indicate forward and reverse transcriptional directions, respectively. Translocated genes are indicated by lines with arrows.</p> <p><strong>Table 1</strong>.<strong> </strong>Summary of <em>Atteva aurea </em>mitochondrial genome.</p> <p><strong>Supplementary material 1. </strong>List of primers used to amplify and sequence the <em>Atteva aurea</em> mitochondrial genome.</p>
FIGURE 7 in The complete mitochondrial genome of Thereuopoda clunifera (Chilopoda: Scutigeridae) and phylogenetic implications within Chilopoda
FIGURE 7. Nucleotide-based phylogenetic tree of 25 Myriapoda species with one Merostomata species as an outgroup. Numbers at nodes represent the posterior probability for the Bayesian analysis and bootstrap values for Maximum Likelihood analysis. "-" indicates this clade not supported by ML analysis.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.