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410 results for “Mitochondrial gene”
FIGURE 3 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 3. Phylogeny of the Chinese Prionini based on partial sequences of 16S rRNA. A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values (%), Wtd. S.S. = 0.1041, APSD = 5.454, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values (%), -Ln likelihood = 1754.1334, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values (%), tree length = 280, CI = 0.7429, RI = 0.4586, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities (%), the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
FIGURE 2 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 2. Phylogeny of the Chinese Prionini based on partial sequences of 12S rRNA (excluding Priotyrannus closteroides). A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values, Wtd. S.S. = 0.0266, APSD = 3.139, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values, -Ln likelihood = 2474.8359, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values, tree length =431, CI = 0.7425, RI = 0.4158, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities, the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
FIGURE 1 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 1. Phylogeny of the Chinese Prionini based on partial sequences of 12S rRNA. A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values, Wtd. S.S. = 0.0787, APSD = 4.741, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values, -Ln likelihood = 2748.8839, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values, tree length = 499, CI = 0.7054, RI = 0.3849, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities, the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
FIGURE 7 in Phylogenetic analysis of the Prionini (Coleoptera: Cerambycidae: Prioninae) from China based on mitochondrial ribosomal RNA genes and Cytochrome oxidase I gene
FIGURE 7. Phylogeny of the Chinese Prionini based on combined sequences of 12S rRNA and 16S rRNA (excluding Priotyrannus closteroides). A: Bootstrap 50% majority-rule consensus tree of distance method by PAUP* with bootstrap values (%), Wtd. S.S. = 0.0251, APSD = 3.047, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; B: Bootstrap 50% majority-rule consensus tree of maximum likelihood method by PAUP* with bootstrap values (%), -Ln likelihood = 4077.7392, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; C: Bootstrap 50% majority-rule consensus tree of parsimony method by PAUP* with bootstrap values (%), tree length =682, CI = 0.7405, RI = 0.3723, the scale bar in the bottom left corner of the tree being in units appropriate to the tree; D: Bayesian tree by MrBayes with Bayesian posterior probabilities (%), the scale bar in the bottom left corner of the tree meaning 0.1 nucleotide substitutions per site.
FIGURE 3 in Interrelationships and history of the slit-eared skinks (Gongylomorphus, Scincidae) of the Mascarene islands, based on mitochondrial DNA and nuclear gene sequences
FIGURE 3. Phylogeography of Gongylomorphus skinks in Mauritius based on 1102bp of combined mtDNA sequence data. Lower-case letters refer to collection localities in Fig. 1 and Table 1. Haplotype networks are drawn with the areas of circles proportional to number of individuals observed; dots represent unobserved haplotypes, and lines between them each represent a single nucleotide substitution. Filled circles represent samples collected from extant populations, and open circles samples from extinct ones.
FIGURE 2 in Interrelationships and history of the slit-eared skinks (Gongylomorphus, Scincidae) of the Mascarene islands, based on mitochondrial DNA and nuclear gene sequences
FIGURE 2. Bayesian maximum likelihood tree for extinct and extant Gongylomorphus skinks and a range of outgroup taxa, based on 1473 bp of combined mitochondrial (12S rRNA, cytochrome b) and nuclear (c-mos) DNA sequence. Numbers adjacent to nodes indicate: Bayesian posterior probability/MP bootstrap support values for analyses conducted using all samples (top line, if present), and only a subset of samples with full-length sequence for all three genes (bottom or only line). Letters a-s indicate the sampling locality in Mauritius for each specimen (Fig. 1, Table 1). Letters in bold are specimens which were sequenced for all three genes. Letters suffixed by an * are specimens that represent extinct populations.
FIGURE 1 in Interrelationships and history of the slit-eared skinks (Gongylomorphus, Scincidae) of the Mascarene islands, based on mitochondrial DNA and nuclear gene sequences
FIGURE 1. (A) Map of the west Indian Ocean showing the location of the Mascarene islands. (B) Mauritius showing collection localities for Gongylomorphus bojerii skinks used in the present study. (C) Mauritius showing collection localities for Gongylomorphus 'orange-tail' and G. fontenayi skinks used in the present study. * indicates extinct populations.
FIGURE 6 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 6. Maximum parsimony phylogenies from the analysis based on cyt b sequences. Above the nodes are MP bootstrap values (>50%), ML bootstrap values (>50%), and ME bootstrap values (>50%), from left to right, respectively. Below the nodes are decay indices. The asterisks indicate bootstrap values smaller than 50%.
FIGURE 9 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 9. Maximum parsimony phylogenies from the analysis based on the combined data (COI, 16S rRNA and 28S rRNA gene sequences). Above the nodes are MP bootstrap values (>50%), ML bootstrap values (>50%), and ME bootstrap values (>50%), from left to right, respectively. Below the nodes are decay indices. The asterisks indicate bootstrap values smaller than 50%.
FIGURES 1–5. Relationship between K2P in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURES 1–5. Relationship between K2P+Γ distances and uncorrected pairwise sequence distances for each gene partition. 1. Scatter plot graphic for third positions of COI; 2. COI; 3. cyt b; 4. 16S rRNA; 5. 28S rRNA.
FIGURE 8 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 8. Maximum likelihood phylogram based on combined data (16S rRNA and 28S rRNA gene sequences). The topology was reconstructed under the TVM + I + G model of nucleotide substitution, -log likelihood = 2660.77. Above the nodes are bootstrap support values derived from MP, ML and ME analysis, from left to right, respectively. Below the nodes are decay indices. The asterisks indicate bootstrap values smaller than 50%. All unambiguous morphological characters used in this study are mapped on this topology and are indicated on the right.
FIGURE 10 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 10. Maximum parsimony phylogram based on combined cyt b, COI, 16S rRNA and 28S rRNA gene sequences (length = 1398, CI = 0.631, and RI = 0.443). Above the nodes are bootstrap support values derived from MP, ML and ME analysis, from left to right, respectively. Below the nodes are decay indices. The asterisks indicate bootstrap values smaller than 50%. All unambiguous morphological characters used in this study are mapped on this topology and are indicated on the right.
FIGURE 7 in Taxonomic status of Velinoides Matsumura (Hemiptera: Reduviidae: Harpactorinae) inferred from mitochondrial and nuclear genes
FIGURE 7. Phylogenetic tree of Coranus Curtis based on COI gene (K2P model) using distance method (minimum evolution). Bootstrap values (1000 replications) are shown above nodes.
FIGURE 1. 50 in Re-evaluation of species allied to Mithrax hispidus (Decapoda: Brachyura: Majoidea: Mithracidae) based on three mitochondrial genes
FIGURE 1. 50% majority-rule consensus tree inferred from Bayesian analysis of 12s, 16s, and COI DNA data. Support from left to right: BA, MP, and ML. Keys = Florida Keys, NEGMx = northeast Gulf of Mexico, SGMx = southern gulf of Mexico, EGMx = eastern Gulf of Mexico, WGMx = western Gulf of Mexico.
FIGURE 2 in Re-evaluation of species allied to Mithrax hispidus (Decapoda: Brachyura: Majoidea: Mithracidae) based on three mitochondrial genes
FIGURE 2. Chelipeds of: A) Mithrax hispidus ULLZ 11041, B) Mithrax pleuracanthus ULLZ 6751 C) Mithrax tortugae ULLZ 6980. Arrows indicate diagnostic characters on carpus and merus.
Figure 3 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes
Figure 3. The Bayesian phylogeny of the genus Talpa as inferred from the complete cytb gene sequence. The designations are as in Figure 3. The outgroup (representatives of the genera Euroscaptor, Mogera, Parascaptor, Scaptochirus and tribes Desmanini, Scalopini and Condylurini) is not shown.
Figure 4 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes
Figure 4. Species tree of Talpa produced by the *BEAST algorithm using the Bayesian multispecies coalescent approach. Values above the branches correspond to Bayesian posterior probabilities.
Figure 2 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes
Figure 2. The Bayesian phylogeny of the genus Talpa as inferred from a concatenated alignment of four nuclear genes. Values above the branches correspond to Bayesian posterior probabilities (BPP) in MrBayes and bootstrap support (1000 pseudoreplicates) in ML and MP analyses, correspondingly. Representatives of the genera Euroscaptor, Mogera, Parascaptor, Scaptochirus and tribes Desmanini, Scalopini and Condylurini are used as outgroups.
Figure 1 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes
Figure 1. Map of sampling localities for specimens of the genus Talpa used in this study. Localities 1–37 are listed in Table 1 (original material), localities 38–57 correspond to the sequences retrieved from GenBank and are listed in Supporting Information 1.
Figure 5 in An underground burst of diversity - a new look at the phylogeny and taxonomy of the genus Talpa Linnaeus, 1758 (Mammalia: Talpidae) as revealed by nuclear and mitochondrial genes
Figure 5. Timescale of major divergence events among Talpa based on nuclear concatenation (BEAST). The divergence times correspond to the mean posterior estimate of their age in Myr. The grey bars represent the 95% HPD interval. Numbers above the branches correspond to posterior probabilities for each node.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.