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Fig. 3 in Dynamics of the restoration of physical trails in the grass-cutting ant Atta capiguara (Hymenoptera, Formicidae)
Fig. 3. Restoration of the physical trails of nest 2. First and last day of survey of trail 1 (A and B, respectively), 2 (C and D, respectively) and 3 (E and F, respectively). The lines B, D, F show the location where the trail was restored.
Fig. 1 in Dynamics of the restoration of physical trails in the grass-cutting ant Atta capiguara (Hymenoptera, Formicidae)
Fig. 1. Percentage variation in the mean length of grass blades for the experimental block (continuous lines) and control block (dashed lines) of each manipulated trail of Nest 1 (A) and 2 (B). The lines of same thickness correspond to the same trail.
Fig. 2 in Dynamics of the restoration of physical trails in the grass-cutting ant Atta capiguara (Hymenoptera, Formicidae)
Fig. 2. Restoration of the physical trails of nest 1. First and last day of survey of trail 1 (A and B, respectively), 2 (C and D, respectively) and 3 (E and F, respectively). The lines on B, D, F show the location where the trail was restored.
Fig. 9. Core ARD 3 in The Use of Testate Amoebae in Monitoring Peatland Restoration Management: Case Studies from North West England and Ireland
Fig. 9. Core ARD 3 selected percentage testate amoebae diagram, data are presented as percentages of the total testates in each level. The diagram has been subdivided into zones to better aid interpretation. Note that in the older literature (including all the more accessible identification guides) Archerella flavum is refered to as Amphitrema flavum.
Fig. 5. Testate amoebae from the top 20 in The Use of Testate Amoebae in Monitoring Peatland Restoration Management: Case Studies from North West England and Ireland
Fig. 5. Testate amoebae from the top 20 cm of Holcroft Moss, data are presented as percentages of the total testates in each level. The diagram has been subdivided into zones (HM I – HMIV) to better aid interpretation. The zones were defined by a combination of simple inspection and multivariate analysis.
Fig. 8. Core ARD 2 in The Use of Testate Amoebae in Monitoring Peatland Restoration Management: Case Studies from North West England and Ireland
Fig. 8. Core ARD 2 selected percentage testate amoebae diagram, data are presented as percentages of the total testates in each level. The diagram has been subdivided into zones to better aid interpretation. Note that in the older literature (including all the more accessible identification guides) Archerella flavum is refered to as Amphitrema flavum.
Fig. 7. Core ARD 1 in The Use of Testate Amoebae in Monitoring Peatland Restoration Management: Case Studies from North West England and Ireland
Fig. 7. Core ARD 1 selected percentage testate amoebae diagram, data are presented as percentages of the total testates in each level. The diagram has been subdivided into zones to better aid interpretation. Note that in the older literature (including all the more accessible identification guides) Archerella flavum is refered to as Amphitrema flavum and Padaungiolla lageniformis is called Nebela lageniformis.
Text-fig. 1. Restoration of Crinobrachiatus brachiatus (HALL), a crinoid probably related to Simakocrinus, in semi-recumbent orientation. Cirri are depicted on one side of column only. Scale bar is 1 cm. (After Eckert and Brett, 1985). in Simakocrinus Gen. Nov. (Crinoidea, Col.) From The Bohemian Early And Middle Devonian Of The Barrandian Area (The Czech Republic)
Text-fig. 1. Restoration of Crinobrachiatus brachiatus (HALL), a crinoid probably related to Simakocrinus, in semi-recumbent orientation. Cirri are depicted on one side of column only. Scale bar is 1 cm. (After Eckert and Brett, 1985).
Text-fig. 2 Associate Professor RNDr. Václav Ziegler CSc. in Faculty of Education of Charles University at Prague during Trends in didactics of biology, conference on the 20th anniversary of the restoration activities of the Department of Biology and Environmental Studies at the Faculty of Education of Charles University in Prague 2. October 2014. (photo: author 2014) in Václav Ziegler Septagenarian
Text-fig. 2 Associate Professor RNDr. Václav Ziegler CSc. in Faculty of Education of Charles University at Prague during Trends in didactics of biology, conference on the 20th anniversary of the restoration activities of the Department of Biology and Environmental Studies at the Faculty of Education of Charles University in Prague 2. October 2014. (photo: author 2014)
Fig. 10 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 10. Hydrodynamic restoration of the Baculites compressus 3D printed model following overdamped harmonic motion. Apertural angle (θa) measured in degrees as a function of time after rotating approximately 38° from the equilibrium orientation. An angle of -90° represents a condition where the aperture is directed downwards. The function of decay in θa with time is represented by the grey dashed curve. Note that this model restores more quickly and does not oscillate about the equilibrium orientation.
Fig. 7 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 7. Virtual and physical hydrostatic models of Nautilus pompilius with computed percentage of the phragmocone emptied for neutral buoyancy (Φ) and hydrostatic stability (St). The tip of the up-side-down pyramid = center of buoyancy. The tip of the right-side-up pyramid = total center of mass. A. External view of the virtual model. B. Medial section of the virtual model with each component of unique density (green, soft body; red, cameral gas; blue, cameral liquid; grey, shell). C. Modified virtual model with simplified internal geometry and bismuth counterweight (yellow, PLA plastic; red, air; blue, liquid; purple, bismuth counterweight). D. Neutrally-buoyant, 3D printed model. The differences in Φ and the apertural angle (θa) are a result of the mass discrepancy (Table 5) and irregular geometry of the balloon. The error in St was computed assuming that the total mass discrepancy was distributed in the positive or negative z-directions.
Fig. 9 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 9. Virtual and physical hydrostatic models of Baculites compressus with computed percentage of the phragmocone emptied for neutral buoyancy (Φ) and hydrostatic stability (St). Green, soft body; grey, shell; red, gas; blue, liquid; yellow, PLA plastic; purple, bismuth counterweight; B, center of buoyancy; M, center of mass. A. Virtual model with an even distribution of cameral liquid and gas in the phragmocone (center of mass of cameral liquid and gas = center of volume of the phragmocone; cameral liquid and gas not shown). B. Modified virtual model with simplified internal geometry ("Modified 1" in Table 3). C. Neutrally-buoyant, 3D printed model. D. Modified virtual model with simplified internal geometry and axel hole through pivot point of rotation ("Modified 2" in Table 3). E. Neutrally-buoyant, 3D printed model fixed to an axel and silicone tubing used to supply thrust in the ventral direction. For this model, the mass discrepancy (Table 5) resulted in a slightly lower of 97.3%, but was held constant at 100%. All computed errors in St were computed assuming that the total mass discrepancy was distributed in the positive or negative z-directions.
Fig. 6 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 6. Hydrostatic models of Baculites compressus with computed percentage of the phragmocone emptied for neutral buoyancy (Φ) and hydrostatic stability (St). All models are oriented dorsum-left. The centers of buoyancy are marked by the tip of the higher pyramid. The total centers of mass are marked by the tip of the lower pyramid. Each material of unique density is designated a color (green, soft body; red, cameral gas; blue, cameral liquid; transparent grey, shell). A. Virtual model with 40% body chamber length to total length (BCL/L). B. Virtual model with 33% BCL/L and adorally distributed cameral liquid. C. Virtual model with 33% BCL/L and adapically distributed cameral liquid. D, E. B. compressus model modified with a concave dorsum similar to B. grandis and 33% BCL/L. Adorally (D) and adapically (E) distributed cameral liquid.
Fig. 3. Full 3D in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 3. Full 3D model of Baculites compressus with model components. A. Complete, digitally-reconstructed shell rendered in X-ray view to show internal structure. B. Three-dimensional model the soft body. C. Three-dimensional model of the cameral volumes within the phragmocone.
Fig. 4 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 4. Generation of a 3D printed model of Nautilus pompilius with theoretically equal physical properties to the virtual counterparts. A. Original virtual model from Peterman et al. (2019: fig. 2.5). B. Modified virtual model with simplified internal geometry. The center of buoyancy remains the same because external geometry does not change. The total center of mass, however, is corrected by a bismuth counterweight of known volume, density, and mass. C. 3D printed posterior half of the physical model with bismuth counterweight in the computed position. D. Anterior half of the physical model showing the one-way valve for liquid to exit upon displacement by an air-filled balloon. E. Neutrally buoyant physical model with the required volume to liquid ratio for neutral buoyancy. This computed volume of air is inserted through a one-way entrance valve into the internal balloon. Tracking points are placed parallel to the aperture in order to analyze movement in a hydrodynamic setting.
Fig. 5 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 5. Position of the ventral tracking point (V) and umbilical tracking point (U) as a function of time measured with the physics modeling software (Tracker 4.11.0; Brown 2017). Note that the rotation of the aperture is coupled with translational motion, resulting in complex movement.
Fig. 11 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 11. Thrust required to change the Baculites compressus model orientation (θa). A. Thrust Scenario 1: A continuous thrust supplied to the venter with a similar thrust ratio to Nautilus (Table 1). The average change from a vertical resting orientation (Δ θpeak) is 22.7°. B. Thrust Scenario 2: Periodic pulses from a pump with a simulated mantle cavity of 20% soft body volume of B. compressus (Table 1). The average change from a vertical resting orientation ( Δ θpeak) is 25.6°. C. Thrust Scenario 3: Periodic pulses from a pump with a thrust ratio between Sepia officinalis and Loligo vulgaris (Table 1). The average change from a vertical resting orientation (Δ θpeak) is 72.2°. Average peak thrust (Fpeak) error bars represent one standard deviation calibrated from 30 second intervals of pumping.
Fig. 8 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 8. Hydrodynamic restoration of the Nautilus pompilius 3D printed model following underdamped harmonic oscillation. Apertural angle (θa) measured in degrees as a function of time after rotating approximately 38° from the equilibrium orientation. An angle of zero represents a condition where the aperture is horizontally oriented. Open dots represent the peaks used to calculate decay in amplitude with time (grey dashed curves).
Fig. 2 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 2. Shell and septum thickness measured from three specimens of Baculites compressus (WSU-1400, WSU-1401, and WSU-1405). Exponential curves were fit to these points to define thickness for the full 3D model as a function of whorl height.
Fig. 1 in Mode of life and hydrostatic stability of orthoconic ectocochleate cephalopods: Hydrodynamic analyses of restoring moments from 3D printed, neutrally buoyant models
Fig. 1. Three-dimensional reconstruction of a fragmentary baculite Baculites compressus Say, 1820 (WSU-1400) from the late Campanian Pierre Shale of Meade County, South Dakota. A. Model of a fragmentary specimen generated by photogrammetry with the software (3DF Zephyr). B. Broken septum isolated from the photogrammetry model. C. Suture pattern. D. Complete septum created by reconstructing the higher-order frilling with the suture pattern as a template.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.