Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
391
datasets available to search
ShareScore release 0.9.0
Dataset results
391 results for “Spatial analysis”
Data from: Grains of connectivity: analysis at multiple spatial scales in landscape genetics
Open the record for dataset details and reuse information.
Data from: Understanding the spatial scale of genetic connectivity at sea: unique insights from a land fish and a meta-analysis
Open the record for dataset details and reuse information.
Data from: Improving public safety through spatial synthesis, mapping, modeling, and performance analysis of emergency evacuation routes in California localities
Open the record for dataset details and reuse information.
Spatial point pattern analysis of traces (SPPAT): an approach for visualizing and quantifying site-selectivity patterns of drilling predators
Open the record for dataset details and reuse information.
Data from: Analysing small insect glands with UV-LDI MS: high-resolution spatial analysis reveals the chemical composition and use of the osmeterium secretion in Themira superba (Sepsidae: Diptera)
For many insect species, pheromones are important communication tools, but chemical analysis and experimental study can be technically challenging because they require the detection and handling of complex chemicals in small quantities. One drawback of traditional mass spectrometry methods such as gas chromatography mass spectrometry is that whole-body extractions from one to several hundred individuals are required, with the consequence that intra- and interindividual differences cannot be detected. Here, we used the recently introduced UV-LDI MS (ultraviolet laser desorption/ionization mass spectrometry) to profile the 'osmeterium' of the sepsid fly Themira superba that is located on the edge of the hind tibia of males. Based on analyses of individual legs, we established that the gland produced a secretion that consisted of oxygenated hydrocarbons and putative isoprenoids. The secretion was first detected 24 h after eclosion, and its transfer to the wings of females during mating was demonstrated using UV-LDI MS. We then tested whether the secretion had an anti-aphrodisiac function, but experimental transfer of the secretion to virgin females did not affect mating success or copulation duration. Throughout the study, UV-LDI MS proved invaluable, because it allowed tracking the natural and experimental transfer of small quantities of pheromones to specific body parts of small flies.
Data from: Population genomic analysis suggests strong influence of river network on spatial distribution of genetic variation in invasive saltcedar across the southwestern US
Understanding the complex influences of landscape and anthropogenic elements that shape the population genetic structure of invasive species provides insight into patterns of colonization and spread. The application of landscape genomics techniques to these questions may offer detailed, previously undocumented insights into factors influencing species invasions. We investigated the spatial pattern of genetic variation and the influences of landscape factors on population similarity in the invasive riparian shrub saltcedar (Tamarix L.) by analyzing 1,997 genome-wide SNP markers for 259 individuals from 25 populations collected throughout the southwestern US. Our results revealed a broad-scale spatial genetic differentiation of saltcedar populations between the Colorado and Rio Grande river basins and identified potential barriers to population similarity along both river systems. River pathways most strongly contributed to population similarity. In contrast, low temperature and dams likely served as barriers to population similarity. We hypothesize that large-scale geographic patterns in genetic diversity resulted from a combination of early introductions from distinct populations, the subsequent influence of natural selection, dispersal barriers, and founder effects during range expansion.
Data used for submission entitled "A spatial analysis of Multiplayer Online Battle Arena mobility traces"
<p>A mobility trace dataset for the popular Multiplayer Online Battle Arena game "Heroes of Newerth"</p>
Dataset for Analysis of Various Spatial Resolutions for Modelling Sector-Coupled Energy Systems
<p>Dataset for preprocessing Balmorel data in this Danish case study.</p>
Data from: Sex-determining 3D regulatory hubs revealed by genome spatial auto-correlation analysis
<p>Mammalian sex is determined by opposing networks of ovarian and testicular genes that are well characterized. However, its epigenetic regulation is still largely unknown, thus limiting our understanding of a fundamental process for species propagation. Here we explore the 3D chromatin landscape of sex determination <em>in vivo</em>, using <em>METALoci</em>, a novel genome spatial auto-correlation analysis.</p> <p><strong>Extended Data File 1: Coordinates for HH metaloci in each sample.</strong></p> <p>The EDFile1_H3K27ac_HH_metaloci_per_gene.zip file contains four files named:</p> <ul> <li>XX10.5_H3K27ac_HH_metaloci_per_gene.bed</li> <li>XX13.5_H3K27ac_HH_metaloci_per_gene.bed</li> <li>XY10.5_H3K27ac_HH_metaloci_per_gene.bed</li> <li>XY13.5_H3K27ac_HH_metaloci_per_gene.bed</li> </ul> <p>Each BED file contains the following columns tab separated:</p> <ul> <li>chr Chromosome</li> <li>start Start coordinates</li> <li>end End coordinates</li> <li>MetaLociBinNumber Number of the bin in the METALoci layout</li> <li>GeneSymbol Gene symbol</li> </ul> <p> </p> <p><strong>Extended Data File 2: Coordinates bins in METALoci with ATAC-seq accessible peak targeted by TF.</strong></p> <p>The EDFile2_TF_ATAC_ML_Sites.zip file contains four files named:</p> <ul> <li>XX10.5_TF_ATAC_ML_Sites.tsv</li> <li>XX13.5_TF_ATAC_ML_Sites.tsv</li> <li>XY10.5_TF_ATAC_ML_Sites.tsv</li> <li>XY13.5_TF_ATAC_ML_Sites.tsv</li> </ul> <p>Each TSV file contains the following columns tab separated:</p> <ul> <li>chr Motif site chromosome </li> <li>start Motif site start coordinates </li> <li>end Motif site end coordinates</li> <li>bin Hi-C bin number</li> <li>pchr ATAC site chromosome</li> <li>pstart ATAC site start coordinates</li> <li>pend ATAC site end coordinates</li> <li>gene Gene symbol</li> </ul>
Spatial Distribution and Cluster Analysis of Road Traffic Accidents in Nepal
Open the record for dataset details and reuse information.
Fig. 4 in Spatial patterns of zooplanktivore Chirostoma species (Atherinopsidae) during water-level fluctuation in the shallow tropical Lake Chapala, Mexico: seasonal and interannual analysis
Fig. 4. GAM results for May of species correlation influence on fish density. a: effect of Chirostoma jordani on C. consocium; b: effect of C. jordani on C. labarcae; c: effect of C. labarcae on C. consocium. Circles represent the residuals. Spline fit (solid line) is bound by 95% confidence intervals (dotted lines).
dataset for Spatial Distribution of Wildlife on University Campuses and Its Correlations with Environmental Factors: A Multi-Source Data Analysis
Open the record for dataset details and reuse information.
The potential benefits of Citizen Science for Spatial Planning: an exploratory analysis of 22 Belgian and Dutch cases
<p>We analysed 22 Belgian and Dutch citizen science cases to explore the potential benefits of citizen science for spatial planning. The 22 cases are described in descriptive fiches following a common framework and further studied on a CSV-file. </p>
Data to accompany "Evaluation of Spatial Audio Reproduction Methods (Part 2): Analysis of Listener Preference", J. AES, 2016
<p>This work was supported by the EPSRC Programme Grant S3A: Future Spatial Audio for an Immersive Listener Experience at Home (EP/L000539/1). Details about the data underlying this work, along with the terms for data access, are available from http://dx.doi.org/10.15126/surreydata.00809533</p> <p>If you use the data, please cite the following paper:</p> <p>J. Francombe, T. Brookes, and R. Mason, 2016: Evaluation of Spatial Audio Reproduction Methods (Part 2): Analysis of Listener Preference. Journal of the Audio Engineering Society</p>
Supporting data for SpatialOne: End-to-End Analysis of Spatial Transcriptomics at Scale
<p>Supplementary data supporting the <em>SpatialOne: End-to-End Analysis of Spatial </em><em>Transcriptomics at Scale</em> publication</p> <p> </p> <blockquote> <p>To showcase the capabilities of SpatialOne, two human lung cancer formalin-fixed, paraffin-embedded (FFPE) samples are analyzed. These samples are prepared following the CG000495 protocol (Figure 1b), sequenced with the 10x Visium CytAssist, and processed using the 10x SpaceRanger version 2. We also present analysis of two adult mouse samples sequenced using 10x Visium samples (one fresh frozen brain tissue section processed using SpaceRanger v2 and one FFPE kidney sample processed using the SpaceRanger v1), and 75 internal samples. </p> <p> For the human lung cancer samples, single-cell data from the the Lung Cancer Atlas (Salcher et al., 2022) is used as reference. This dataset is filtered to include only Chromium-generated data. For the mice samples, the GSE107585 single-cell dataset serves as reference. In the human lung cancer datasets, a pathologist annotated regions of interest corresponding to tumors, blood vessels, and alveolar regions.</p> </blockquote> <p> </p> <p>Changelog:</p> <ul> <li>Added a README file describing the zip content.</li> </ul>
Supplementary material 6 from: Winder L, Alexander C, Griffiths G, Holland J, Wooley C, Perry J (2019) Twenty years and counting with SADIE: Spatial Analysis by Distance Indices software and review of its adoption and use. Rethinking Ecology 4: 1-16. https://doi.org/10.3897/rethinkingecology.4.30890
: Data type: software
Supplementary material 4 from: Winder L, Alexander C, Griffiths G, Holland J, Wooley C, Perry J (2019) Twenty years and counting with SADIE: Spatial Analysis by Distance Indices software and review of its adoption and use. Rethinking Ecology 4: 1-16. https://doi.org/10.3897/rethinkingecology.4.30890
: Data type: software
Supplementary material 2 from: Winder L, Alexander C, Griffiths G, Holland J, Wooley C, Perry J (2019) Twenty years and counting with SADIE: Spatial Analysis by Distance Indices software and review of its adoption and use. Rethinking Ecology 4: 1-16. https://doi.org/10.3897/rethinkingecology.4.30890
: Data type: software
Supplementary material 1 from: Winder L, Alexander C, Griffiths G, Holland J, Wooley C, Perry J (2019) Twenty years and counting with SADIE: Spatial Analysis by Distance Indices software and review of its adoption and use. Rethinking Ecology 4: 1-16. https://doi.org/10.3897/rethinkingecology.4.30890
: Data type: software
Supplementary material 7 from: Winder L, Alexander C, Griffiths G, Holland J, Wooley C, Perry J (2019) Twenty years and counting with SADIE: Spatial Analysis by Distance Indices software and review of its adoption and use. Rethinking Ecology 4: 1-16. https://doi.org/10.3897/rethinkingecology.4.30890
: Data type: software
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.