Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
975
datasets available to search
ShareScore release 0.9.0
Dataset results
975 results for “Spatial transcriptomics”
Spatial transcriptome unveils the heterogeneity between subpopulations of Bacillus subtilis surface-associated communities
GEO Series GSE214964. Bacillus subtilis. 27 samples. Type: Expression profiling by high throughput sequencing.
Immune-Epithelial Interactions and Tissue Remodeling in the Inflammatory Respiratory Nasal Tract [NanoString GeoMx spatial transcriptomics]
GEO Series GSE235714. Homo sapiens. 40 samples. Type: Expression profiling by high throughput sequencing; Other.
Single-cell MultiOmics and spatial transcriptomics demonstrate neuroblastoma developmental plasticity
GEO Series GSE183729. Homo sapiens. 18 samples. Type: Expression profiling by high throughput sequencing.
A pairwise cytokine code explains the organism-wide response to sepsis [spatial transcriptomics by Visium]
GEO Series GSE224145. Mus musculus. 4 samples. Type: Other.
Peripheral glia constitute a pro-reparative niche triggering skin wound healing [Spatial Transcriptomics]
GEO Series GSE308952. Mus musculus. 1 samples. Type: Other.
Microglia - astrocyte cross-talk in the amyloid plaque niche of an Alzheimer’s disease mouse model as revealed by spatial transcriptomics (CosMx)
GEO Series GSE263791. Mus musculus. 2 samples. Type: Other.
Visium Analysis of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution
GEO Series GSE181300. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomics of the achilles tendon harvested from the injury site with and without TrkA neuronal inhibition
GEO Series GSE245097. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Nova-ST spatial transcriptomics of Lecanamab- and Lecanemab LALA-PG-treated xenotrasplanted human microglia [ST]
GEO Series GSE297667. Homo sapiens. 8 samples. Type: Other.
Open-ST: High-resolution spatial transcriptomics in 3D [xenium]
GEO Series GSE263498. Homo sapiens. 2 samples. Type: Other.
The neurons that restore walking after paralysis [spatial transcriptomics]
GEO Series GSE184369. Mus musculus. 16 samples. Type: Expression profiling by high throughput sequencing; Other.
Spatial Transcriptomic Analysis of Surgical Resection Specimens of Primary Head and Neck Squamous Cell Carcinoma Treated with Afatinib in a Window-of-Opportunity Study (EORTC90111-24111)
GEO Series GSE289908. Homo sapiens. 3 samples. Type: Other.
The spatial transcriptomic landscape of fibrosing ILDs [Nanostring]
GEO Series GSE255174. Homo sapiens. 179 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomics reveals the pharmacological effects on tumors and TME structural heterogeneity under MASK vaccine treatment
GEO Series GSE248356. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Fishing with Two Lines: A Hybrid Approach to Spatial Transcriptomic Discovery
GEO Series GSE315411. Homo sapiens. 5 samples. Type: Other.
Integrative single cell and spatial transcriptomic analysis reveal reciprocal microglia-plasma cell crosstalk in the mouse brain during chronic Trypanosoma brucei infection
GEO Series GSE200642. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
Cell-Type Profiling of the Sympathetic Nervous System Using Spatial Transcriptomics and Spatial Mapping of mRNA [Slide-seq]
GEO Series GSE230776. Gallus gallus. 1 samples. Type: Expression profiling by high throughput sequencing.
Spatial transcriptomic profiling reveals local and domain-establishing regulatory signaling networks within the bone marrow
GEO Series GSE228534. Mus musculus. 4 samples. Type: Expression profiling by high throughput sequencing; Other.
Multi-resolution deconvolution of spatial transcriptomics data reveals continuous patterns of inflammation
GEO Series GSE173778. Mus musculus. 34 samples. Type: Expression profiling by high throughput sequencing.
Gingival spatial analysis reveals geographic immunological variation in a microbiota-dependent and -independent manner [Spatial Transcriptomics]
GEO Series GSE269576. Mus musculus. 4 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.