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The fungal ecology of the Brassington Formation (Middle Miocene) of Derbyshire, UK, and a new method for palaeoclimate reconstruction
<p>Köppen-Geiger climate class data used to reconstruct qualitative palaeoclimates. Two sheets in file. Sheet 1: Köppen-Geiger data used to reconstruct Middle Miocene Köppen-Geiger climate classes. Sheet 2: References supporting sheet 1.</p>
Text-fig. 7. Fossil and living examples of leaves of Acer. a: Acer sp. (fossil), Pleistocene diatomaceous deposits near Faufouille, France (scale bar = 10 mm); National Museum Wales specimen 86.54G.1a; b: Leaf from living Acer growing near Machynlleth, mid-Wales, UK; photo by B. A. Thomas. in Naming Of Parts: The Use Of Fossil-Taxa In Palaeobotany
Text-fig. 7. Fossil and living examples of leaves of Acer. a: Acer sp. (fossil), Pleistocene diatomaceous deposits near Faufouille, France (scale bar = 10 mm); National Museum Wales specimen 86.54G.1a; b: Leaf from living Acer growing near Machynlleth, mid-Wales, UK; photo by B. A. Thomas.
Text-fig. 5. Fossil remains of a leafy Lepidodendron ophiurus BRONGN. shoot bearing a Flemingites strobilus produced by a tree similar to that shown in Text-fig. 2a; Middle Coal Measures Formation (Duckmantian – upper Bashkirian), Brymbo, near Wrexham, UK (see Thomas et al. 2020: fig. 16b); National Museum Wales specimen 2013.43G.120. in Naming Of Parts: The Use Of Fossil-Taxa In Palaeobotany
Text-fig. 5. Fossil remains of a leafy Lepidodendron ophiurus BRONGN. shoot bearing a Flemingites strobilus produced by a tree similar to that shown in Text-fig. 2a; Middle Coal Measures Formation (Duckmantian – upper Bashkirian), Brymbo, near Wrexham, UK (see Thomas et al. 2020: fig. 16b); National Museum Wales specimen 2013.43G.120.
Text-fig. 4. Lepidocarpon cone in the process of disaggregating as part of the dispersal strategy of the plants. When preserved isolated, the sporophylls are assigned to the fossil-genus Lepidostrobophyllum. Refigured from Thomas (1981). Grovesend Formation (upper Asrturian – lower Moscovian), Kilmersdon Tip, Radstock Coalfield, UK; Natural History Museum (London) specimen V.60431. in Naming Of Parts: The Use Of Fossil-Taxa In Palaeobotany
Text-fig. 4. Lepidocarpon cone in the process of disaggregating as part of the dispersal strategy of the plants. When preserved isolated, the sporophylls are assigned to the fossil-genus Lepidostrobophyllum. Refigured from Thomas (1981). Grovesend Formation (upper Asrturian – lower Moscovian), Kilmersdon Tip, Radstock Coalfield, UK; Natural History Museum (London) specimen V.60431.
Text-fig. 2. The distinction between fossil plants (a) and plant fossils (b). a: Reconstruction of a late Carboniferous arborescent lycopsid, often referred to as the Lepidodendron-tree; artwork by A. Townsend (formerly of National Museum Wales, Cardiff, UK; see Townsend et al. 1998); b: Lepidodendron aculeatum STERNB.; Middle Coal Measures Formation (Duckmantian – upper Bashkirian), Brymbo, near Wrexham, UK (see Thomas et al. 2020: fig. 16b); National Museum Wales specimen 2013.43G.88. in Naming Of Parts: The Use Of Fossil-Taxa In Palaeobotany
Text-fig. 2. The distinction between fossil plants (a) and plant fossils (b). a: Reconstruction of a late Carboniferous arborescent lycopsid, often referred to as the Lepidodendron-tree; artwork by A. Townsend (formerly of National Museum Wales, Cardiff, UK; see Townsend et al. 1998); b: Lepidodendron aculeatum STERNB.; Middle Coal Measures Formation (Duckmantian – upper Bashkirian), Brymbo, near Wrexham, UK (see Thomas et al. 2020: fig. 16b); National Museum Wales specimen 2013.43G.88.
Text-fig. A1. a: Ulmus longifolia UNGER, 1847 (Unger 1847: pl. 26, fig. 5). b: Ulmus braunii HEER, 1856 (Heer 1856: pl. 79, fig. 17). c: Ulmus affinis A.MASSAL., 1853 (Massallongo 1854: pl. 4, fig. 8). d, e: Ulmus carpinifolia GLED., 1773 syn. of Ulmus minor MILL., 1768, (herbarium K566057), UK. Scale bars 30 mm (a–e). in The Late Early Pleistocene Flora Of Oriolo, Faenza (Italy): Assembly Of The Modern Forest Biome
Text-fig. A1. a: Ulmus longifolia UNGER, 1847 (Unger 1847: pl. 26, fig. 5). b: Ulmus braunii HEER, 1856 (Heer 1856: pl. 79, fig. 17). c: Ulmus affinis A.MASSAL., 1853 (Massallongo 1854: pl. 4, fig. 8). d, e: Ulmus carpinifolia GLED., 1773 syn. of Ulmus minor MILL., 1768, (herbarium K566057), UK. Scale bars 30 mm (a–e).
Results from Air Quality Monitoring and Surveys in UK Residences - Appendix (Survey Questions)
<p>Survey questions used in the paper titled "Results from Air Quality Monitoring and Surveys in UK Residences". Abstract below.</p> <p>Air pollution is a persistent issue in dwellings worldwide, costing an estimated 10-25 billion US dollars per year to the United Kingdom’s national health service alone. However, it is an “invisible problem” since background pollutants are often imperceptible except during acute pollution events such as wildfires. Although public awareness of ventilation has increased due to the COVID-19 pandemic, there are few tools available to assess its efficacy. Widely available sensor systems that can measure these pollutants tend to be single units with simple apps and little connection to mitigation, whereas different rooms in a house may have different pollution issues with different recommended actions. In this study, we present the results of a measurement study conducted using a multi-room sensor kit in twenty-nine dwellings across the UK. We also analyze the occupants’ reaction to the hardware, data, and a prototype alerting system. The study shows broad awareness of air quality in the participants. However, this awareness rarely corresponded to effective mitigation actions or ventilation provision. The concept of alerts was welcomed by participants if accompanied by actionable recommendations.</p> <p>The data showed significant pollution events, as measured by proxies such as total VOC and CO<sub>2</sub>, occurring almost daily, particularly in households with gas appliances. These incidents were concentrated around particular times of day and behaviors, indicating that the capacity of infiltration and extract ventilation to bring in adequate fresh air was overwhelmed. No significant outdoor pollution was detected in houses, which was expected given their sheltered peri-urban locations. The study highlights the need for comprehensive implementation of measurement, ventilation, and treatment measures in the UK housing stock to reduce the impact of indoor pollution on health.</p>
CATCH-EyoU: Processes in Youth's Construction of Active EU Citizenship: Cross-national Wave 1 Questionnaires: Italy, Sweden, Germany, Greece, Portugal, Czech Republic, UK, and Estonia: EXTRACT: Identification with Europe and Home Country
<p>It is a well-established fact that forming a mature and coherent political identity is one developmental task in adolescence and young adulthood. However, given different degrees of commitment on the regional, national, and European level, the question remains whether young people’s identification varies among those spheres? Drawing on data from the European Catch-EyoU-project, it was the goal of this study to examine whether young people can be classified according to their identification toward their home country and Europe and how these types are associated with age, gender, country as well as political interest, tolerance, and political participation. The study is based on adolescents and young adults from the Czech Republic, Germany, Great Britain, Greece, Estonia, Italy, Portugal, and Sweden (<em>N </em>= 9,339; <em>M</em>age=19.62; 59.1% female). Cluster analysis revealed five types of young people’s identification with country and Europe which showed significant associations between group membership and tolerance, political interest, and participation. The implications of distinguishing types of identification and their associations with political outcomes are discussed.</p>
QR GWAS summary statistics for 39 quantitative traits in the UK Biobank
<p>Quantile regression (QR) GWAS summary statistics from the study "Genome-wide discovery for biomarkers using quantile regression at biobank scale". The preprint is available at <a href="https://doi.org/10.1101/2023.06.05.543699" target="_blank" rel="noopener">https://doi.org/10.1101/2023.06.05.543699</a>. </p> <p><strong>List of traits</strong></p> <p>A comma-delimited text file, QRGWAS.Traits_n39.csv, includes the list of 39 quantitative traits from the UK Biobank reported in the QR GWAS analyses above.</p> <p><strong>Summary statistics</strong></p> <p>The tab-delimited text files are QR GWAS summary statistics, which are bgzip compressed (.tsv.gz files) and tabix indexed (.tbi files).</p> <ul> <li>Column "CHR": chromosome</li> <li>Column "POS": based pair position</li> <li>Column "ID": variant ID</li> <li>Column "REF": non-effect allele</li> <li>Column "ALT": effect allele tested in GWAS</li> <li>Column "EAF": frequency of the effect allele</li> <li>Column "N": sample size</li> <li>Column "P_QR": integrated p-value of the quantile regression (QR) model across multiple quantile levels.</li> <li>Column "P_LR": p-value of the linear regression (LR) association statistic</li> <li>Columns from "P_Q10" to "P_Q90": quantile-specific QR p-value for the quantile levels 0.1, 0.2, ..., 0.9 (10th, 20th, ..., 90th quantiles).</li> </ul>
UAV-derived cluster greenness and pathlength of individual trees collected at Marden Park, UK
<p>Inidivual tree cluster greenness (gcc) and pathlength used in the study "UAV-derived greenness and within-crown spatial patterning can detect ash dieback in individual trees".</p>
Dataset: Drone orthomosaics for remote detection of Pacific oysters (Kingsbridge Estuary, UK)
<p><span>A field campaign was carried out at two distinctive intertidal cases at </span><span>Kingsbridge Estuary, UK. Drone images were collected around low tide on </span><span>each site of the estuary selected by the high number of Pacific oysters reported </span><span>and their very different characteristic landscapes of mudflats and rocky shore. D<span>rone images were collected using </span><span>a DJI Phantom4 Pro v2.0 in a pre-planned grid mission using the ”DJI </span><span>GS Pro” mission planner software.</span><span> </span><span>Photos were acquired at 10 m altitude </span><span>(resulting in a pixel size of</span><span> </span><span>∼</span><span>0.3 px/cm) with a front overlap ratio of 80% </span><span>and a side overlap of 70%.</span><span> </span></span></p> <p><span>The two sites included in this work are:</span><br><span>•</span><span> </span><span>Site A: Collapit Creek mudflats</span><span>. An area of approximately 1.67 ha</span> <span>intertidal mudflat was surveyed on 13th May 2022 </span><span>(lat, lon = 50.259245, -3.771041).</span><br><span>•</span><span> </span><span>Site B: Scoble Point rocky shore</span><span>. The intertidal region that follows </span><span>the shoreline for approximately 250 m was surveyed on 16th May 2022, </span><span>Figure 3 (50.240164, -3.755421).</span></p>
Fig. 1 in Molecular detection of Angiostrongylus vasorum in gastropods in Surrey, UK
Fig. 1 Neighbour joining tree based on cytochrome oxidase I (COI) sequences representing all clades of the Agriolimacidae family. Values next to branches indicate percentage bootstrap support. The asterisk (*) indicates the Agriolimacidae specimen collected in this study
Figure 5 in The First Cases of Evolving Glyphosate Resistance in UK Poverty Brome (Bromus sterilis) Populations
Figure 5. Calculated glyphosate GR50 values from log-logistic dose–response model of 11 field-collected B. sterilis populations from the United Kingdom. Error bars are standard error of GR50 parameter estimates.
Figure 2 in The First Cases of Evolving Glyphosate Resistance in UK Poverty Brome (Bromus sterilis) Populations
Figure 2. Percentage reduction in foliage dry weight relative to untreated controls for 35 UK B. sterilis populations treated with 270 g glyphosate ha − 1. Shaded bars represent sensitive (dark gray) and suspected resistant (gray) populations based upon the initial glyphosate screen. Error bars are standard error of the mean.
Figure 1 in The First Cases of Evolving Glyphosate Resistance in UK Poverty Brome (Bromus sterilis) Populations
Figure 1. Mean foliage fresh weight per plant (g) for suspected glyphosate-resistant (OXON-R and SEL-R) and glyphosate-sensitive (ADAS and SEL-S) populations of B. sterilis following glyphosate treatment: untreated control (gray), 360 g ha − 1 (white), and 540 g ha − 1 (dark gray). Error bars are standard error of the mean.
Figure 4 in The First Cases of Evolving Glyphosate Resistance in UK Poverty Brome (Bromus sterilis) Populations
Figure 4. Glyphosate dose–response curves for survival of three suspected glyphosate-resistant B. sterilis populations (SEL-R, OXON-R, and 09D118) and three glyphosatesensitive populations (SEL-S, OXON-S, and ADAS). Symbols represent mean observed survival data, and lines are fitted regression models. (A) SEL-R (continuous line) and SEL-S (dashed line); (B) OXON-R (continuous line) and OXON-S (dashed line); and (C) 09D118 (continuous line) and ADAS (dashed line).
Template matching catalog of the seismicity induced by hydraulic fracturing operations at Preston New Road (UK) in 2019
<p>The file PNR2_TMcatalog.csv contains the catalog of seismicity induced by the hydraulic fracturing operations carried out at Preston New Road (UK) in 2019. The catalog was created with template matching using a single downhole sensor located in a monitoring well.</p> <p>Here is the description of the columns found in the file:</p> <ul> <li>ARRTIME: P-wave arrival times at the reference station.</li> <li>X, Y, Z: hypocentral coordinates (easting, northing and depth). Northing and easting are expressed in the United Kingdom Ordnance Survey coordinate system (EPSG:27700). Depth is expressed in meters below sea level.</li> <li>MW: moment magnitudes.</li> <li>CLUSTER: cluster ID. Earthquakes with the same cluster ID were detected by the same template.</li> </ul>
Fig. 5 in Bivalve-barnacle pseudoplanktonic colonisation of wood from the Toarcian, Lower Jurassic, Strawberry Bank Lagerstätte, Somerset, UK
Fig. 5. Detail of the barnacle Toarcolepas mutans Gale and Schweigert, 2015, from upper surface of BRLSI.M3941, the Toarcian of Strawberry Bank, Somerset. In C, D, individuals are "kippered"—split along the sagittal plane. Locations of specimens on concretion shown in dashed boxes in SOM: fig. 2. Scale bars 5 mm.
Fig. 2. Fossilized driftwood association, BRLSI.M3941 in Bivalve-barnacle pseudoplanktonic colonisation of wood from the Toarcian, Lower Jurassic, Strawberry Bank Lagerstätte, Somerset, UK
Fig. 2. Fossilized driftwood association, BRLSI.M3941, the Toarcian of Strawberry Bank, Somerset, upper surface of limestone concretion showing wood mould and associated specimens of Pseudomytiloides dubius (Sowerby, 1828) and Toarcolepas mutans Gale and Schweigert, 2015. See SOM: fig. 1 for orientation imagery.
Fig. 1 in Bivalve-barnacle pseudoplanktonic colonisation of wood from the Toarcian, Lower Jurassic, Strawberry Bank Lagerstätte, Somerset, UK
Fig. 1. Location and stratigraphy of the Strawberry Bank Lagerstätte and associated beds. A. Location of Ilminster, Somerset, England, UK and Lower Jurassic outcrop pattern in the area. B. Limestone concretion of the Strawberry Bank Lagerstätte exposed in situ north of Ilminster during excavations of the site in 2019. Folding knife is 9 cm long. C. Stage information, and ammonite zones and subzones. D. Local lithostratigraphic scheme for the same timescale. E. Simplified sedimentary log at Strawberry Bank with the Strawberry Bank Lagerstätte shaded in pink (after Williams et al. 2015 and Boomer et al. 2021).
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.