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Figure 9 in Investigations of the nervous system biomarkers in the brain and muscle of freshwater fish (Oreochromis niloticus) following accumulation of nanoparticles in the tissues
Figure 9. The mean Ca-ATPase activity and associated standard errors in the muscle of O. niloticus. See Figure 8 for details.
Figure 3 in Investigations of the nervous system biomarkers in the brain and muscle of freshwater fish (Oreochromis niloticus) following accumulation of nanoparticles in the tissues
Figure 3. TEM images of muscle tissue sample of fish (O. niloticus) exposed to 1 (A and B), 5 (C and D), and 25 (E and F) mg/L of CuO NPs for 14 days of uptake and 14 days of depuration periods, respectively.
Fig. 1. Species accumulation curves for 2012 pitfall sampling with each facet representing a in Changes in an invaded Florida ant (Hymenoptera: Formicidae) community over 25 years
Fig. 1. Species accumulation curves for 2012 pitfall sampling with each facet representing a distinct habitat. Curves were generated with incidence data and sites were added randomly to generate these curves. Shaded areas represent the 95% confidence intervals.
Fig. 2. Species accumulation curves for 2012 litter sampling with each facet representing a in Changes in an invaded Florida ant (Hymenoptera: Formicidae) community over 25 years
Fig. 2. Species accumulation curves for 2012 litter sampling with each facet representing a distinct habitat. Curves were generated with incidence data and sites were added randomly to generate these curves. Shaded areas represent the 95% confidence intervals.
Fig. 3. Species accumulation curves for 2018 in Changes in an invaded Florida ant (Hymenoptera: Formicidae) community over 25 years
Fig. 3. Species accumulation curves for 2018 pitfall sampling done in sandhill habitat. Monthly sampling data was pooled into a single dataset. The curve was generated with incidence data and sites were added randomly to generate the curve. Shaded areas represent the 95% confidence intervals.
Linked collectors and determiners for: (Appendix G) Benthic foraminifera accumulation rates of ODP Site 167-10121.
Natural history specimen data linked to collectors and determiners held within, "(Appendix G) Benthic foraminifera accumulation rates of ODP Site 167-10121". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/f738a892-2b88-476f-bfc2-dce4b9c0ffa5">https://bionomia.net/dataset/f738a892-2b88-476f-bfc2-dce4b9c0ffa5</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/f738a892-2b88-476f-bfc2-dce4b9c0ffa5">https://gbif.org/dataset/f738a892-2b88-476f-bfc2-dce4b9c0ffa5</a>. Formatted as a Frictionless Data package.
FIG. 9 in Les accumulations de Gigantopecten restitutensis (Fontannes, 1884) (Mollusca: Bivalvia: Pectinidae) dans le Burdigalien supérieur des carrières de Ménerbes et de Lacoste (Vaucluse, bassin d'Apt, SE France): analyse et hypothèse explicative
FIG. 9. — Les échinodermes de la carrière Soubeyran: A, dalle à Tripneustes planus (Agassiz 1840), MHNG, (cliché Balat); a, Astropecten sp. (G, G. restitutensis); B, petite dalle à échinodermes, coll. Lacombe (cliché Philippe) (T, T. planus; a, astérides; c, comatule; o, Ophiocoma sp.; G, G. restitutensis (Fontannes, 1884); m, mélobésiées); C, Astropecten sp., MHNG, (cliché Balat). Échelles: A, 10 cm; B, C, 5 cm.
FIG. 8 in Les accumulations de Gigantopecten restitutensis (Fontannes, 1884) (Mollusca: Bivalvia: Pectinidae) dans le Burdigalien supérieur des carrières de Ménerbes et de Lacoste (Vaucluse, bassin d'Apt, SE France): analyse et hypothèse explicative
FIG. 8. — Gigantopecten restitutensis (Fontannes, 1884) des carrières des Baquis (fin): A, VD adulte, face externe, MNHN.F.A49184 (cliché Faye); B, valve inférieure d'anomie (a) fixée sur une VG adulte de G. restitutensis, MHNB (cliché Bongrain); C, Megabalanus tintinnabulum Linnaeus, 1758 fixée sur VG de G. restitutensis (G), MHNL (cliché Camaret); D, intérieur d'une VG adulte de G. restitutensis, MHNB (cliché Bongrain), empreinte du muscle adducteur (ad); E, vues externes d'un spécimen bivalve de G. restitutensis (E [a], VG; E [b], VD) ayant subi une attaque de crustacé, coll. Philippe, MHNL (clichés Bongrain). Abréviations: a, déformation d'une côte principale; b, apparition d'une côte intercalaire; c, costulation anormale sur le dessus d'une côte après un arrêt de croissance; E [c], vue du sommet de la VG où, vraisemblablement, l'attaque s'est produite. Échelle: 5 cm.
FIG. 7 in Les accumulations de Gigantopecten restitutensis (Fontannes, 1884) (Mollusca: Bivalvia: Pectinidae) dans le Burdigalien supérieur des carrières de Ménerbes et de Lacoste (Vaucluse, bassin d'Apt, SE France): analyse et hypothèse explicative
FIG. 7. — Gigantopecten restitutensis (Fontannes, 1884) des carrières des Baquis: A, VG adulte fracturée, vue externe, MHNL, cliché Camaret); B, VD adulte fracturée, vue externe, MHNO (cliché Camus); la lettre f indique le départ des fractures; C, fragment de Pteria phalaenacea (P) entre deux VG de G. restitutensis adultes, MHNL (cliché Camaret); D, empreintes de Spirorbis sp. sur une VG adulte de G. restitutensis, MHNL (cliché Camaret); E, perforations de Polydora sp. sur une VG adulte de G. restitutensis, MHNO (cliché Camus); F, perforations dues à des cliones sur une VD adulte de G. restitutensis, MHNL (cliché Camaret). Échelle: 5 cm.
FIG. 6 in Les accumulations de Gigantopecten restitutensis (Fontannes, 1884) (Mollusca: Bivalvia: Pectinidae) dans le Burdigalien supérieur des carrières de Ménerbes et de Lacoste (Vaucluse, bassin d'Apt, SE France): analyse et hypothèse explicative
FIG. 6. — Distributions de fréquences du DUP de Gigantopecten restitutensis (Fontannes, 1884) des carrières des Baquis: A, dalle MHNB (58 individus); B, dalle MHNO (73 ind.); C, dalle MHNG (33 ind.); D, dalle MNHN.F (35 ind.); E, total de A, B, C, D + petites dalles non représentées (MHNL, MHNA, Lacombe, Ginoux), en tout 266 individus.
FIG. 5. — A, B in Les accumulations de Gigantopecten restitutensis (Fontannes, 1884) (Mollusca: Bivalvia: Pectinidae) dans le Burdigalien supérieur des carrières de Ménerbes et de Lacoste (Vaucluse, bassin d'Apt, SE France): analyse et hypothèse explicative
FIG. 5. — A, B, Dalles à Gigantopecten restitutensis (Fontannes, 1884) des Baquis (fin); A, G. restitutensis vus en coupes longitudinales (1, VG retournée; 2, bivalve écrasé; 3, 4, bivalves) et transversale (5) sur le profil d'une dalle non dégagée, MHNO (cliché Camus); B, dalle du MHNG (cliché Balat); C, D, calcaire bioclastique de la carrière Soubeyran; C, fragment avec deux G. restituensis bivalves pré-adultes (G) et Tripneustes planus (Agassiz, 1840) (T), coll. Lacombe (cliché Philippe); D, gros fragment d'astéride sur une VG de G. restitutensis adulte, coll. Lacombe (cliché Philippe). Échelles: A, B, 10 cm; C, D, 5 cm.
FIG. 4 in Les accumulations de Gigantopecten restitutensis (Fontannes, 1884) (Mollusca: Bivalvia: Pectinidae) dans le Burdigalien supérieur des carrières de Ménerbes et de Lacoste (Vaucluse, bassin d'Apt, SE France): analyse et hypothèse explicative
FIG. 4. — Les dalles à G. restitutensis (Fontannes, 1884) des Baquis (suite): A, aux fossiles dégagés, MHNO (cliché Camus); B, dalle brute aux fossiles non dégagés, MHNO (cliché Camus). Abréviations: e.i., échinide irrégulier; g, gastéropode; ja, jeune adulte; m, mélobésiées; T, Tripneustes planus (Agassiz, 1840); G, Gigantopecten restitutensis. Échelle: 20 cm.
FIG. 1 in Les accumulations de Gigantopecten restitutensis (Fontannes, 1884) (Mollusca: Bivalvia: Pectinidae) dans le Burdigalien supérieur des carrières de Ménerbes et de Lacoste (Vaucluse, bassin d'Apt, SE France): analyse et hypothèse explicative
FIG. 1. — Le golfe rhodano-provençal au Burdigalien supérieur, d'après Philippe (1987: fig.1 modifiée). —, limites de la transgression burdigalienne; xxxx, limites du golfe rhodano-provençal; 1-2, Ménerbes-Lacoste; 3, Les Angles; 4, Saint-Paul-Trois-Châteaux; 5, Saint-Restitut; 6, Lavalduc; Ê, seuil de Coustellet.
FIG. 3 in Les accumulations de Gigantopecten restitutensis (Fontannes, 1884) (Mollusca: Bivalvia: Pectinidae) dans le Burdigalien supérieur des carrières de Ménerbes et de Lacoste (Vaucluse, bassin d'Apt, SE France): analyse et hypothèse explicative
FIG. 3. — Les dalles à Gigantopecten restitutensis (Fontannes, 1884) des carrières des Baquis (Lacoste, bassin d'Apt, Vaucluse): A, MHNB (cliché Artur); B, MNHN.F.A49184 (cliché Faye); C, VG préadulte, MHNL (cliché Camaret); D, vue dorsale d'un adulte bivalve, MHNO (cliché Bongrain); E, VD préadulte, MHNO (cliché Camus). Abréviations: cdp, « coup de pouce » ou stade pectinoïde; n, nodosités. Échelles: A, B, 20 cm; C-E, 5 cm.
Aurora A and cortical flows promote polarization and cytokinesis by inducing asymmetric ECT-2 accumulation - Data Archive
<p>This archive contains all the images and raw data generated for: Katrina M Longhini & Michael Glotzer, “Aurora A and cortical flows promote polarization and cytokinesis by inducing asymmetric ECT-2 accumulation”</p> <p>The data is organized by figure then experiment. Each embryo folder contains formatted embryos, which are rotated, cropped, and photobleach corrected. Each recording starts at time 0 on the respective graph.</p> <p>The “AccumulationDataNew” files contain all the data generated from the “3pixel_membranefinder_w_dir.ijm” and “membrane_ROI_TimeSeries_max_scaled_dirs.ijm” scripts organized in a Tidy format generated in R using the first portion of the script “Edited_Membrane_Accumulation_Line_Script.Rmd”. These Fiji and R Markdown scripts are located in the “Analysis Scripts“ folder.</p> <p>All data visualization scripts are included in the “Analysis Scripts” folder.</p> <p>Sequences of plasmids generated for this paper are located in the “Plasmid Sequences” folder.</p>
Dataset for accumulation of pTau231 at the post synaptic density in Alzheimer's disease
<p>Dataset included from Journal of Alzheimer's disease publication "Accumulation of pTau231 at postsynaptic density in Alzheimer's Disease. This includes validation of synaptosomal fraction richness in Figure 5, tTau and pTau231 Simoa Quanterix synaptosomal fraction data for Supplementary figure 2, entorhinal cortex PSD95 P4 adjusted total tau and pTau231 values from Simoa Quanterix for generation of model shown in figure 4, quantitative AMPA immunohistochemical staining data used for generating figure 2, NanoString protein panel data used to generate heatmap in figure 7, quantitative immunofluorescence staining data for pTau214 and PSD95 colocalization studies in figure 3, Braak stage 2 case NanoString protein data for intra-case regional comparisons of disease progression, and synaptosome Simoa total tau and pTau231 data in addition to western blot P4 PSD95 data that was used for generation of figures 4 and 6.</p>
Model for Calibrating a Model to Thirty Years of Data to Capture the Accumulation of Chloride from Winter Deicers in a Shallow Aquifer
<p>We created a ten layer model to simulate the flow and transport of chloride in Will County’s shallow aquifer with Groundwater Vistas software. This model is transient with yearly stress periods starting in 1950 and ending in 2020.</p> <p>The groundwater flow model was developed using the U.S. Geological Survey (USGS) finite difference code MODFLOW-NWT (McDonald and Harbaugh 1988; Niswonger et al., 2011) within the graphical user interface Groundwater Vistas 7.24 (Rumbaugh and Rumbaugh, 2020). We simulated chloride transport with the MODFLOW post-processing package MT3D-USGS (Bedekar et al., 2016).</p> <p>See Methods Section of 'Calibrating a Model to Thirty Years of Data to Capture the Accumulation of Chloride from Winter Deicers in a Shallow Aquifer'</p> <p>With questions email Cecilia Cullen (ccullen3@illinois,edu) or Daniel Abrams (dbabrams@illinois.edu) </p>
Maxima of Station-based Rainfall Data over Different Accumulation Durations and Large Scale Covariates
<p><strong>Description</strong></p> <p>These data were used in the study "Non-Stationary Large-Scale Statistics of Precipitation Extremes in Central Europe" (Fauer et al., 2022, https://doi.org/10.21203/rs.3.rs-2542862/v1). Rainfall data were collected from stations by the German Meteorological Service (DWD) and Wupperverband (corrected data). Raw time series data from the German Meteorological Service is publicly available under https://opendata.dwd.de/climate_environment/CDC/observations_germany/climate/. Only the annual and monthly precipitation maxima over different durations are published here. For more detailed information on our work and the modeling of extreme rainfall data, see also Fauer et al. (2021, https://doi.org/10.5194/hess-25-6479-2021).</p> <p> </p> <p><strong>Files</strong></p> <ul> <li><strong>precipMax_and_covariates.csv</strong><strong>:</strong> This file contains aggregated rainfall data over different durations and for different stations ("xdat"). Also, it contains covariates for the variables "blocking", "NAO", surface air temperature ("tas"), humidty and their polynomials up the the fourth order.</li> <li><strong>precip_meta.csv:</strong> This file contains additional information of the different stations such as longitude, latitude, altitude, temporal resolution (m=minutely, h=hourly, d=daily), group. The same group is assigned to stations which have a distance of less than 250 meters and can be treated as one station. The value in "group" corresponds to the value "station" in precipMax_and_covariates.csv.</li> </ul> <p><br> <strong>Abstract of the according study</strong></p> <p>Extreme precipitation shows non-stationary behavior over time, but also with respect to other large-scale variables. While this effect is often neglected, we propose a model including the influence of North Atlantic Oscillation, time, surface temperature and a blocking index. The model features flexibility to use annual maxima as well as seasonal maxima to be fitted in a generalized extreme value setting. To further increase the efficiency of data usage maxima from different accumulation durations are aggregated so that information for extremes on different time scales can be provided. Our model is trained to individual station data with temporal resolutions ranging from one minute to one day across Germany. The models are selected with a stepwise BIC model selection and verified with a cross-validated quantile skill index. The verification shows that the new model performs better than a reference model without large scale information. Also, the new model enables insights into the effect of large scale variables on extreme precipitation. Results suggest that the probability of extreme precipitation increases with time since 1950 in all seasons. High probabilities of extremes are positively correlated with blocking situations in summer and with temperature in winter. However, they are negatively correlated with blocking situations in winter and temperature in summer.</p> <p> </p> <p><strong>Acknowledgements</strong></p> <p>We would like to thank the German Weather Service (DWD), especially Thomas Junghänel, and the Wupperverband, especially Marc Scheibel, for maintaining the station-based rainfall gauge and providing us with data.</p> <p> </p> <p><strong>Funding</strong></p> <p>This study is part of the ClimXtreme project (Grant number 01LP1902H) and is sponsored by the Federal Ministry of Education and Research in Germany.</p> <p> </p> <p><strong>Changelog</strong></p> <ul> <li>added humidity as large-scale covariate</li> <li>large-scale covariates are normalized to mean=0 and standard deviation=1</li> </ul>
Experimental data for "Magnetic field control of light-induced spin accumulation in monolayer MoSe2"
<p>This repository contains the experimental data related to the article "Magnetic field control of light-induced spin accumulation in monolayer MoSe<sub>2</sub>" and is provided to the reader under the “data availability” directive. The files have been organized following the figure notation of the main text.</p>
Figure |. Accumulation of species / publication year for the tribe Zammarini, since Distant recognized the tribe in 1905. in A historical overview of the classification of the Neotropical tribe Zammarini (Hemiptera, Cicadidae) with a key to genera
Figure |. Accumulation of species / publication year for the tribe Zammarini, since Distant recognized the tribe in 1905.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.