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Dataset results
168 results for “chromosomal assembly”
Taz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [BrdU]
GEO Series GSE78819. Schizosaccharomyces pombe. 11 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Hybrid assembly of the genome of the entomopathogenic nematode Steinernema carpocapsae identifies the X-chromosome.
GEO Series GSE127823. Steinernema carpocapsae. 33 samples. Type: Expression profiling by high throughput sequencing.
Chromosome-level genome assembly of Chinese mitten crab (Eriocheir japonica sinensis)
<p>The Chinese mitten crab (<i>Eriocheir japonica sinensis</i>) is one of the most popular breeding species of crab in China due to its high economic and nutritional value. However, earlier published genome assemblies of <i>E. j. sinensis</i> have been highly fragmented due to limited sequencing and assembly techniques.<b> </b>In this study, we performed high-coverage sequencing of the Chinese mitten crab using advanced high-through chromosome conformation capture (Hi-C) technology and anchored these Hi-C data to previously published contig-level genome assembly for chromosome construction. Thus, we successfully assembled the first chromosome-level reference genome of <i>E. j. sinensis</i>, which contained 72 chromosomes with a N50 length of 17.61 Mb. Evaluation results demonstrated a high degree of genomic connectivity and accuracy. Acquisition of the chromosome-level genome of <i>E. j. sinensis </i>not only provides a basis for the study of adaptive evolution in crabs by comparative genomics, but should also help in studies on the growth, development, and reproduction of the Chinese mitten crab.</p>
Dataset for chromosome-level genome assembly of Scapharca kagoshimensis
<p>Ark shells are commercially important clam species that inhabit in muddy sediments of shallow coasts in East Asia. For a long time, the lack of genome resources has hindered scientific research of ark shells. Here, we reported a high-quality chromosome-level genome assembly of <i><span>Scapharca kagoshimensis</span></i>, with an aim to unravel the molecular basis of heme biosynthesis, and develop genomic resources for genetic breeding and population genetics in ark shells.</p>
Chromosome-Level Genome Assembly of the 'Gannanzao' Navel Orange (Citrus sinensis L. Osbeck Gannanzao)
<p>Gannanzao navel orange (<em>Citrus sinensis</em> Osbeck cv. Gannanzao) is a variant of the Newhall navel orange (<em>C. sinensis</em> Osbeck cv. Newhall) that exhibits an earlier maturation, making it commercially valuable. However, the underlying mechanism underneath its early maturation remains unknown. To address this question, we conducted genome sequencing and de novo assembly of navel orange cv. Gannanzao. The assembled genome sequence is 334.57 Mb in length with a GC content of 31.48%. It comprises 318 contigs (N50 = 3.23 Mb) and 187 scaffolds (N50 = 31.86 Mb). The BUSCO test demonstrates 94.6% completeness. The annotation revealed 23,037 gene models, 164.95 Mb of repetitive sequences, and 2,554 ncRNA.</p>
Chromosome-level genome assembly for the angiosperm Silene conica
<p>Genome annotation for <em>Silene conica</em> </p>
A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae
GEO Series GSE159524. Saccharomyces cerevisiae. 6 samples. Type: Expression profiling by high throughput sequencing.
Dataset for chromosome-level genome assembly of Scapharca kagoshimensis
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Chromosome-level genome assembly of Chinese mitten crab (Eriocheir japonica sinensis)
Open the record for dataset details and reuse information.
Chromosome-level genome assembly of the ratmouth barbel, Ptychidio jordani
GEO Series GSE282311. Ptychidio jordani. 1 samples. Type: Methylation profiling by high throughput sequencing.
Taz1-Shelterin promotes facultative heterochromatin assembly at chromosome-internal sites containing late replication origins [Taz1]
GEO Series GSE78822. Schizosaccharomyces pombe. 4 samples. Type: Genome binding/occupancy profiling by genome tiling array.
Chromosome-level genome assembly of the ratmouth barbel, Ptychidio jordani [RNA-seq]
GEO Series GSE282306. Ptychidio jordani. 7 samples. Type: Expression profiling by high throughput sequencing.
De novo assembly of Aedes aegypti using Hi-C yields chromosome-length scaffolds
GEO Series GSE95797. Aedes aegypti; Culex quinquefasciatus; Homo sapiens. 3 samples. Type: Other; Third-party reanalysis.
Phase Separation of Ligand-Activated Enhancers Licenses Cooperative Chromosomal Enhancer Assembly [Gro-Seq]
GEO Series GSE99539. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Chromosome-scale assembly of the Symbiodinium microadriaticum genome
GEO Series GSE152150. Symbiodinium microadriaticum. 22 samples. Type: Other.
Phase Separation of Ligand-Activated Enhancers Licenses Cooperative Chromosomal Enhancer Assembly [4C-seq]
GEO Series GSE99540. Homo sapiens. 2 samples. Type: Other.
Phase Separation of Ligand-Activated Enhancers Licenses Cooperative Chromosomal Enhancer Assembly [ChIP-seq]
GEO Series GSE117492. Homo sapiens. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Phase Separation of Ligand-Activated Enhancers Licenses Cooperative Chromosomal Enhancer Assembly [GRO-seq_RAW]
GEO Series GSE117494. Mus musculus. 4 samples. Type: Other.
Beclin-1 is dispensable for chromosome congression and proper outer kinetochore assembly
GEO Series GSE69052. Homo sapiens. 6 samples. Type: Expression profiling by array.
Phase Separation of Ligand-Activated Enhancers Licenses Cooperative Chromosomal Enhancer Assembly [GRO-seq_MCF_E2]
GEO Series GSE124826. Homo sapiens. 3 samples. Type: Other.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.