Find research datasets worth reusing

opencc-by-4.0Sep 2022View details →

Three-color whole cell LLSM imaging data of ER, H2B, and Lyso over 980 time points during mitosis (Lyso channel)

This dataset includes the three-color whole cell lattice light-sheet microscopy (LLSM) data of ER, H2B, and Lysosomes over 980 time points at 6 sec intervals in a HeLa cell stably expressing calnexin-mEmerald, H2B-mCherry and Lamp1-Halo during mitosis (only Lyso channel here due to the file size restriction, other channels can be found in the same depository with different DOI), which was used to demonstrate SiS-rDL denoising algorithm in our Nature Biotechnology paper (DOI: 10.1038/s41587-022-01471-3). This dataset can be used for non-commercial purposes with proper citations of our NBT paper.

opencc-by-4.0Sep 2022View details →

Three-color whole cell LLSM imaging data of ER, H2B, and Mito over 1000 time points during mitosis (H2B channel)

This dataset includes the three-color whole cell lattice light-sheet microscopy (LLSM) data of ER, H2B, and Mitochondia over 1000 time points at 6 sec intervals in a HeLa cell stably expressing calnexin-mEmerald, H2B-mCherry and Mito-Halo during mitosis (only H2B channel here due to the file size restriction, other channels can be found in the same depository with different DOI), which was used to demonstrate SiS-rDL denoising algorithm in our Nature Biotechnology paper (DOI: 10.1038/s41587-022-01471-3). This dataset can be used for non-commercial purposes with proper citations of our NBT paper.

opencc-by-4.0Feb 2022View details →

Text-fig. 6. Stratigraphic and phylogenetic placement inferred for fossil Fraxinus fruits. Only Fraxinus fossil fruits identified on the section level are included. The black color represents selected fossil fruits from published literature (excluding some Eocene North American occurrences not assigned to section), the red color represents the fossil fruits from the Lühe flora, Yunnan, Southwest China. The phylogenetic relationships are based on Hinsinger et al. (2013). in Fraxinus L. (Oleaceae) Fruits From The Early Oligocene Of Southwest China And Their Biogeographic Implications

Text-fig. 6. Stratigraphic and phylogenetic placement inferred for fossil Fraxinus fruits. Only Fraxinus fossil fruits identified on the section level are included. The black color represents selected fossil fruits from published literature (excluding some Eocene North American occurrences not assigned to section), the red color represents the fossil fruits from the Lühe flora, Yunnan, Southwest China. The phylogenetic relationships are based on Hinsinger et al. (2013).

Fig. 5 in Distributional Range Extension of the Pale Ornate Jobfish Pristipomoides amoenus (Teleostei: Perciformes: Lutjanidae) in the Western Pacific Ocean, with Notes on Newly Recognized Diagnostic Coloration

Fig. 5. Live individuals of Pristipomoides argyrogrammicus collected from Motobu, Okinawa-jima island, Japan, and reared at Okinawa Churaumi Aquarium (photos by A. Kaneko). A, B, 200 m depth, 26 September 2019; C, 105 mm TL, juvenile, 150 m depth, 1 March 2020.

Fig. 4 in Distributional Range Extension of the Pale Ornate Jobfish Pristipomoides amoenus (Teleostei: Perciformes: Lutjanidae) in the Western Pacific Ocean, with Notes on Newly Recognized Diagnostic Coloration

Fig. 4. Distributional records of Pristipomoides amoenus. Stars and circles represent localities of specimens examined in the present and previous studies, respectively. Open symbol indicates type locality.

Fig. 3 in Distributional Range Extension of the Pale Ornate Jobfish Pristipomoides amoenus (Teleostei: Perciformes: Lutjanidae) in the Western Pacific Ocean, with Notes on Newly Recognized Diagnostic Coloration

Fig. 3. Live individual of Pristipomoides amoenus collected from Tsuken-jima island, Okinawa Islands, Japan, 300 m depth, 14 December 2019, and reared at Okinawa Churaumi Aquarium (photos by A. Kaneko). A, Lateral view; B, dorsal view.

Fig. 2 in Distributional Range Extension of the Pale Ornate Jobfish Pristipomoides amoenus (Teleostei: Perciformes: Lutjanidae) in the Western Pacific Ocean, with Notes on Newly Recognized Diagnostic Coloration

Fig. 2. Preserved specimens of (A–D) Pristipomoides amoenus and (E–H) P. argyrogrammicus. A, KAUM–I. 156091, 177.3 mm SL, Amamioshima island, Kagoshima, Japan; B, D, KAUM–I. 113361, 184.7 mm SL, Dong-gang, Pingtung, Taiwan; C, KAUM–I. 156091, 221.2 mm SL, Amami-oshima island, Kagoshima, Japan; E, KAUM–I. 139296, 141.7 mm SL, Amami-oshima island, Kagoshima, Japan; F, H, KAUM–I. 108166, 210.9 mm SL, Amami-oshima island, Kagoshima, Japan; G, KAUM–I. 51137, 277.6 mm SL, Tokara Islands, Kagoshima, Japan; D, H: dorsal view.

Fig. 1 in Distributional Range Extension of the Pale Ornate Jobfish Pristipomoides amoenus (Teleostei: Perciformes: Lutjanidae) in the Western Pacific Ocean, with Notes on Newly Recognized Diagnostic Coloration

Fig. 1. Fresh specimens of (A–C) Pristipomoides amoenus and (D–F) P. argyrogrammicus. A, KAUM–I. 156091, 177.3 mm SL, Amami-oshima island, Kagoshima, Japan; B, KAUM–I. 113361, 184.7 mm SL, Dong-gang, Pingtung, Taiwan; C, KAUM–I. 156091, 221.2 mm SL, Amami-oshima island, Kagoshima, Japan; D, KAUM–I. 139296, 141.7 mm SL, Amami-oshima island, Kagoshima, Japan; E, KAUM–I. 108166, 210.9 mm SL, Amami-oshima island, Kagoshima, Japan; F, KAUM–I. 51137, 277.6 mm SL, Tokara Islands, Kagoshima, Japan.

opencc-by-4.0Aug 2022View details →

Text-fig. 2. Kaolin clay pit at hill Hasenberg in Wiesa, Saxony, Germany; view of southern high wall, showing deeply weathered late Early Miocene lignite seam by dark brown color in center (photographed 2015). Fossil-bearing strata were reported (e.g., Mai 1964) as below lignite seam, but this horizon does actually not crop out (also evidenced by new drillings, communicated by Dr. Jochen Rascher, GEOMONTAN GmbH company, Freiberg/Sa., Germany). in Assessment Of Phytogeographic Reference Regions For Cenozoic Vegetation: A Case Study On The Miocene Flora Of Wiesa (Germany)

Text-fig. 2. Kaolin clay pit at hill Hasenberg in Wiesa, Saxony, Germany; view of southern high wall, showing deeply weathered late Early Miocene lignite seam by dark brown color in center (photographed 2015). Fossil-bearing strata were reported (e.g., Mai 1964) as below lignite seam, but this horizon does actually not crop out (also evidenced by new drillings, communicated by Dr. Jochen Rascher, GEOMONTAN GmbH company, Freiberg/Sa., Germany).

opencc-by-4.0Oct 2022View details →

Data from article: "Wide‑field magnetometry using nitrogen‑vacancy color centers with randomly oriented micro‑diamonds"

This repository contains the dataset obtained from the CW-ODMR magnetic imaging experiment with nitrogen-vacancy (NV) centers using a custom-built wide-field setup. Related publication:  Sengottuvel, S., Mrózek, M., Sawczak, M. et al. Wide-field magnetometry using nitrogen-vacancy color centers with randomly oriented micro-diamonds. Sci Rep 12, 17997 (2022). <a href="https://doi.org/10.1038/s41598-022-22610-5">https://doi.org/10.1038/s41598-022-22610-5</a>. Authors: <ul> <li>Saravanan Sengottuvel, (Institute of Physics, Jagiellonian University in Krakow, Poland)</li> <li>Mariusz Mrózek, (Institute of Physics, Jagiellonian University in Krakow, Poland)</li> <li>Mirosław Sawczak, (Szewalski Institute of Fluid-Flow Machinery, Polish Academy of Sciences, Poland)</li> <li>Maciej J. Głowacki, (Gdańsk University of Technology, Poland)</li> <li>Mateusz Ficek, (Gdańsk University of Technology, Poland)</li> <li>Wojciech Gawlik (Institute of Physics, Jagiellonian University in Krakow, Poland)</li> <li>Adam M. Wojciechowski (Institute of Physics, Jagiellonian University in Krakow, Poland)</li> </ul> Abstract:  Magnetometry with nitrogen-vacancy (NV) color centers in diamond has gained significant interest among researchers in recent years. Absolute knowledge of the three-dimensional orientation of the magnetic field is necessary for many applications. Conventional magnetometry measurements are usually performed with NV ensembles in a bulk diamond with a thin NV layer or a scanning probe in the form of a diamond tip, which requires a smooth sample surface and proximity of the probing device, often limiting the sensing capabilities. Our approach is to use micro- and nano-diamonds for wide-field detection and mapping of the magnetic field. In this study, we show that NV color centers in randomly oriented submicrometer-sized diamond powder deposited in a thin layer on a planar surface can be used to detect the magnetic field. Our work can be extended to irregular surfaces, which shows a promising path for nanodiamond-based photonic sensors. Funding: The research was carried out within the TEAM NET programme of the Foundation for Polish Science co-financed by the European Union under the European Regional Development Fund, project POIR.04.04.00-00-1644/18. This research was funded in part by National Science Centre, Poland grant number 2020/39/I/ST3/02322.  Description of the data:  The dataset consists of 24 individual data files labelled chronologically, starting from f0.fits to f24.fits. The data format is Flexible Image Transport System (FITS). Each FITS file consists of a header and 3-dimensional image data. The header contains the experimental parameters set during data acquisition, which may also be helpful for data analysis. The FITS file can be read using any software (e.g., MATLAB, Python) that supports the FITS file format. An example header:     {'STARFREQ'}    {[                 2700]}                  {' in MHz                                          '}     {'STOPFREQ'}    {[                 3000]}                  {' in MHz                                         '}     {'STEPSIZE'}      {[    1.500000000000000]}       {' Frequency interval                       '}     {'MWPOWER'}   {[                    5]}                    {' in dBm                                         '}     {'NSCANS'}        {[                    5]}                    {' Total number of scan repetitions '}     {'EXPOSURE'}   {[                   20]}                     {' in ms                                            '}     {'FPS'}                {[ 20]}                                     {' no. of frames per second             '}     {'LEDCURR'}      {[    0.990000000000000]}      {' LED current in mA                        }     {'EXPTIME'}       {[1.942112698000000e+02]}  {' Measurement time in seconds    '}     {'END' }              {0×0 char               }                {0×0 char                                       } Table: Data file name and the associated current value set in the wire during the magnetic imaging measurement <table> <thead> <tr> <th>File name</th> <th>Current value (mA)</th> <th>File name</th> <th>Current value (mA)</th> </tr> </thead> <tbody> <tr> <td>f0.fits</td> <td>0</td> <td>f13.fits</td> <td>-300</td> </tr> <tr> <td>f1.fits</td> <td>+50</td> <td>f14.fits</td> <td>-550</td> </tr> <tr> <td>f2.fits</td> <td>+100</td> <td>f15.fits</td> <td>-250</td> </tr> <tr> <td>f3.fits</td> <td>-50</td> <td>f16.fits</td> <td>+550</td> </tr> <tr> <td>f4.fits</td> <td>-100</td> <td>f17.fits</td> <td>+350</td> </tr> <tr> <td>f5.fits</td> <td>-150</td> <td>f18.fits</td> <td>+400</td> </tr> <tr> <td>f6.fits</td> <td>+250</td> <td>f19.fits</td> <td>-400</td> </tr> <tr> <td>f7.fits</td> <td>+450</td> <td>f20.fits</td> <td>-450</td> </tr> <tr> <td>f8.fits</td> <td>+600</td> <td>f21.fits</td> <td>-500</td> </tr> <tr> <td>f9.fits</td> <td>-200</td> <td>f22.fits</td> <td>+150</td> </tr> <tr> <td>f10.fits</td> <td>-350</td> <td>f23.fits</td> <td>+300</td> </tr> <tr> <td>f11.fits</td> <td>+200</td> <td>f24.fits</td> <td>-600</td> </tr> <tr> <td>f12.fits</td> <td>+500</td> <td> </td> <td> </td> </tr> </tbody> </table> For more information on the data analysis methods and results, we recommend you to read the article.

opencc-by-4.0Feb 2021View details →

Рис. 5. Зависимость межΔу цветом и размером цист Heterodera glycines. ГраΔации цвета цист: 1 — моΛочный, 2 — жеΛтый и светΛо-коричневый, 3 — коричневый, 4 — каштановый, 5 — темно-коричневый. Размер цист — в баΛΛах Fig. 5. Relationship between the color and size of Heterodera glycines cysts. Color gradations of cysts: 1 — milky, 2 — yellow and light brown, 3 — brown, 4 — chestnut, 5 — dark brown. The size of cysts — in classes in Reproductive potential of Soybean Cyst Nematode Heterodera glycines - quarantine pest of soybean - in Primorsky Region conditions

Рис. 5. Зависимость межΔу цветом и размером цист Heterodera glycines. ГраΔации цвета цист: 1 — моΛочный, 2 — жеΛтый и светΛо-коричневый, 3 — коричневый, 4 — каштановый, 5 — темно-коричневый. Размер цист — в баΛΛах Fig. 5. Relationship between the color and size of Heterodera glycines cysts. Color gradations of cysts: 1 — milky, 2 — yellow and light brown, 3 — brown, 4 — chestnut, 5 — dark brown. The size of cysts — in classes

opencc-by-4.0Aug 1974View details →

Below: adult male of the same species, in full color. Both fish come from temporary ponds 50 kilometers south of Buenos Aires. Photos by Dr. Hugo P. Gastello. in Cynolebias alexandri, a new species of annual killifish from Argentina, with notes on C. bellottii

Below: adult male of the same species, in full color. Both fish come from temporary ponds 50 kilometers south of Buenos Aires. Photos by Dr. Hugo P. Gastello.

Fig. 5 in Rediscovery of the rare Star Mountains Worm-eating Snake, Toxicocalamus ernstmayri O'Shea et al., 2015 (Serpentes: Elapidae: Hydrophiinae) with the description of its coloration in life

Fig. 5. Distinguishing Toxicocalamus from Micropechis. (A, A')Holotype of T. ernstmayri (MCZ R-145946) from Wangbin, Western Province, PNG. (B, B') Holotype of T. grandis (BMNH 1946.1.18.34) from Setakwa River, Papua Province, Indonesian New Guinea. (C, C') Yellow phase of Micropechis ikaheka (BMNH 1909.4.30.12) from the FakFak Peninsula, West Papua Province, Indonesian New Guinea. Color-coding of head scalation includes six supralabials (orange), a single anterior temporal (yellow), two posterior temporals (blue), and a temporolabial (red). The individual we report here clearly has the same head scute arrangement as T. ernstmayri.

Fig. 2 in Rediscovery of the rare Star Mountains Worm-eating Snake, Toxicocalamus ernstmayri O'Shea et al., 2015 (Serpentes: Elapidae: Hydrophiinae) with the description of its coloration in life

Fig. 2. The first live individual of Toxicocalamus ernstmayri, observed and photographed in broad daylight at the Ok Tedi Mine, North Fly District, Western Province, Papua New Guinea. (A) The individual's serendipitous crossing of a 747 mm wide tire track allowed an approximation of its total length as near 850 mm. (B) The snake moves in a straight line across open ground. (C) Slower movement across a rubble pile allowed a more detailed examination of head and body scales (see Fig. 4). (D) The individual moving under the tracks of a stationary digger. Photos by Blaise Paivu.

Fig. 3 in Rediscovery of the rare Star Mountains Worm-eating Snake, Toxicocalamus ernstmayri O'Shea et al., 2015 (Serpentes: Elapidae: Hydrophiinae) with the description of its coloration in life

Fig. 3. View of an actively worked area of the Ok Tedi Mine. The observed individual of Toxicocalamus ernstmayri eventually disappeared into the vegetation on the slope in the top left of the photograph. Photo by Blaise Paivu.

Fig. 1 in Rediscovery of the rare Star Mountains Worm-eating Snake, Toxicocalamus ernstmayri O'Shea et al., 2015 (Serpentes: Elapidae: Hydrophiinae) with the description of its coloration in life

Fig. 1. Satellite map (derived from Google Earth) of the southern Star Mountains, North Fly District, Western Province, Papua New Guinea, with yellow dots on the larger map indicating two localities (Wangbin and Ok Tedi Mine), approximately 13 km apart, where Toxicocalamus ernstmayri has been recorded. The main town is Tabubil at the confluence of the Ok Tedi and Ok Mani, which flow into the Fly River. Scale = 5 km. The inset map illustrates the location of the larger map in relationship to the rest of New Guinea.

Fig. 4 in Rediscovery of the rare Star Mountains Worm-eating Snake, Toxicocalamus ernstmayri O'Shea et al., 2015 (Serpentes: Elapidae: Hydrophiinae) with the description of its coloration in life

Fig. 4. Confirming the individual's identification as Toxicocalamus ernstmayri. (A) Close-up of the snake shown in Fig. 2C with insets B, C, and D indicated. (B, B') Head and neck in extreme close-up. Color coding of head scalation includes six supralabials (orange), one anterior temporal (yellow), and two posterior temporals (blue), but no temporolabial (see Fig. 5). The head scutes appear to comply with the colubrid-elapid nine dorsal scute arrangement (i.e., two internasals, two prefrontals, one frontal, two supraoculars, and two parietals; therefore lacking any head scute fusion, although this is difficult to discern from the magnified image with accuracy. (C, C') Based on the visible dorsal scales, the dorsal scale count on the anterior body is 15. The count is achieved by locating the vertebral scale row and counting down to the lowest dorsal scale row (eight scales), doubling the count, and subtracting one scale to account for the single vertebral scale row. (D, D') The dorsal scale count at midbody, performed as described for the previous panel, is also 15.

opencc-by-4.0Mar 2018View details →

FIGURE 6. Macrobdella ditetra Moore, 1953 in Range Extension for the Elusive New England Medicinal Leech, Macrobdella sestertia Whitman, 1886 (Hirudinida: Macrobdellidae), in South Carolina, U.S.A., with Notes on Morphology, Coloration, and Biology

FIGURE 6. Macrobdella ditetra Moore, 1953 (CASIZ 224103) feeding on Lithobates sphenocephalus (Cope, 1886); arrows point to the leech.

opencc-by-4.0Mar 2018View details →

FIGURE 4 in Range Extension for the Elusive New England Medicinal Leech, Macrobdella sestertia Whitman, 1886 (Hirudinida: Macrobdellidae), in South Carolina, U.S.A., with Notes on Morphology, Coloration, and Biology

FIGURE 4. Unusual overlapping annuli (annuli 48–49) observed on one specimen of Macrobdella sestertia (ChM IO7).