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278
datasets available to search
ShareScore release 0.9.0
Dataset results
278 results for “cytometry”
Characterization of the tumor-immune microenvironment in hepatocellular carcinoma patients undergoing immune checkpoint inhibitor therapy by highly multiplexed imaging mass cytometry
<p>Imaging mass cytometry data of 42 HCC patients that received immune checkpoint inhibtor therapy after tumor biopsy or resection. </p> <ul> <li>ICI_img_normalized: Preprocessed and normalized multistack .tiff images. Each stack represents one channel. Channel annotations are stored in the ICICohort_panel.csv file.</li> <li>ICI_cellmasks: Masks identifying individual cells on the images.</li> <li>ICI_stromamasks: Masks identifying stromal and parenchymal regions on the image.</li> <li>ICICohort_panel.csv: table containing channel information (metal tag and marker).</li> </ul> <p>Patient etadata may be found in the supplementary table 3 of DOI <a href="https://doi.org/10.1136/gutjnl-2024-332837" target="_blank" rel="noopener noreferrer">10.1136/gutjnl-2024-332837</a>.</p>
Dataset for "Ghost Cytometry"
<p>Dataset for analysis of experiments in "Ghost Cytometry".</p>
Uncertainty Quantification in Multivariate Mixed Models for Mass Cytometry Data (Processed Data)
<p>Processed data computed using R packages <a href="https://christofseiler.github.io/CytoGLMM">CytoGLMM</a> and <a href="https://christofseiler.github.io/cytoeffect">cytoeffect</a>. Raw data available <a href="http://flowrepository.org/id/FR-FCM-ZY3Q">here</a>.</p>
Mass cytometry and integration sequencing data and code from "Quantification of intrinsic regulatory factors refines human hematopoietic progenitor definitions and reveals early erythroid lineage priming"
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Inter and Intra-tumour Heterogeneity of Paediatric-type Diffuse High-Grade Glioma Revealed by Single-Cell Mass Cytometry
<p>raw data (fcs file) from mass cytometry experiments </p>
Raw flow cytometry data files (fcs-files)
<p>These FCS files are a part of the supplementary data for the following publication:</p> <p><strong>Meiotic transmission patterns of additional genomic elements in <em>Brachionus asplanchnoidis</em>, a rotifer with intraspecific genome size variation</strong></p> <p><strong> </strong>Julie Blommaert <sup>1,2</sup> & Claus-Peter Stelzer <sup>1,</sup>*</p> <p><sup>1</sup> Research Department for Limnology, University of Innsbruck, Mondsee, Austria</p> <p><sup>2</sup> The New Zealand Institute for Plant & Food Research Limited Nelson, New Zealand</p> <p>* Corresponding author: claus-peter.stelzer@uibk.ac.at</p> <p><strong>Scientific Reports</strong> (https://doi.org/10.1038/s41598-022-25566-8)</p> <p> </p>
Pooled CRISPR Screening of High-content Cellular Phenotypes by Ghost Cytometry_01
<p>Pooled CRISPR screening of high-content cellular phenotypes by ghost cytometry (NFkB NGS data, conventional flow cytometer data, Amnis data)</p>
Pooled CRISPR Screening of High-content Cellular Phenotypes by Ghost Cytometry_02
<p>Pooled CRISPR Screening of High-content Cellular Phenotypes by Ghost Cytometry (Macrophage NGS data)</p>
Differential Expression of CD200 in B-chronic Lymphoproliferative Disorders by Multicolour Flow Cytometry
ClinicalTrials.gov study NCT03712488. IPD Sharing: Not stated. Countries: 0. Publications: 5.
Combination of Leukocyte Cell Surface Biomarkers Measured by Cytometry, to Differentiate Bacterial From Viral Infections in Emergency Department: a Multicentric Cohort for the Validation of Diagnostic
ClinicalTrials.gov study NCT06155266. IPD Sharing: YES. Countries: 1. Publications: 0.
Imaging mass cytometry data: Diffuse large B-cell lymphoma lymph node section
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Flow cytometry data: healthy donor bone marrow taken during hip surgery
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Data from: Bacterial characterization of Beijing drinking water by flow cytometry and MiSeq sequencing of the 16S rRNA gene
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Imaging mass cytometry data: Head and neck squamous cell carcinoma tissue section
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Picoplankton and Bacteria Abundance analyzed with flow cytometry (FCM) collected aboard student cruises, SKrillEx I (2014), SKrillEx II (2015), and Falkor (2013).
Picophytoplankton populations and non-pigmented prokaryotes are sampled within the California Current Ecosystem (CCE) on SKrillEx I and II, and across the North Pacific on the Falkor, for abundances at various depths. Seawater is collected from Niskin bottles and cells are fixed in the field with paraformaldehyde, and stained with a DNA-specific dye back in the laboratory. The cells are enumerated by an Altra flow cytometer (with a syringe pump for volumetric sample delivery) simultaneously with argon ion lasers, to distinguish three major populations of photoautotrophs (Prochlorococcus, Synechococcus, and pico-eukaryotes) and the assemblage of heterotrophic prokaryotes collectively referred to as H-Bact. These three student cruises, SKrillEx I, SKrillEx II, and Falkor, were distinct cruises and this dataset is complete.
Flow cytometry data for SYBR-Green stained samples collected as part of the Palmer LTER project off the western Antarctic Peninsula, 2010 - 2014.
Flow cytometry data is collected with an Accuri-C6 flow cytometer as part of the regular LTER sampling protocol. Data for samples stained with SYBR-green (i.e. for cells that are not autofluorescent) were exported as fcs format files. Sample naming convention, which includes information on sample date and location, can be found in README.txt. Funding: NSF PLR-1440435
Comprehensive immunophenotypic characterization of Burkitt-like lymphoma with 11q aberration by flow-cytometry
GEO Series GSE93002. Homo sapiens. 11 samples. Type: Genome variation profiling by SNP array.
Investigation of flow cytometry for analysis of mouse brain
GEO Series GSE278315. Mus musculus. 1 samples. Type: Expression profiling by high throughput sequencing.
Unveiling Aging Heterogeneities in Human Dermal Fibroblasts via Nanosensor Chemical Cytometry
GEO Series GSE297406. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Expression data from CXCR4+/FLK1+ and CXCR4-/FLK1- cells isolated by flow cytometry from Day 5 embryoid bodies
GEO Series GSE20841. Mus musculus. 6 samples. Type: Expression profiling by array.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.