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1,819 results for “experimental data”
Raw D and 18O isotope data for a core from the center and moat of the BBC collapse scar: Bonanza Creek Experimental Forest Flood Plains
This data set contains D and 18O data for a core from the center and moat (0 and 6 m) of the BBC collapse scar. Two well-preserved cores from the center of the bog was collected in March 2003 with a gasoline-powered permafrost corer. Cores were stored frozen and sampled using a radial saw. The core was sampled every two cm for macrofossil, diatom analysis and chemistry. Oxygen isotope ratios in aquatic cellulose has been shown to be a reliable tracer of lakewater isotope ratios (Sauer et al., 2001). I predicted that ?D and ?18O signatures in Sphagnum leaves would respond to enrichment and depletion in the bog water over time, providing an independent line of evidence for diatom-inferred hydrologic change. All isotope samples were processed by the Alaska Stable Isotope Facility using a Thermo Finnigan TC EA and Deltaplus XL mass spectrometer (Thermo Electron Corporation, Bremen, Germany) in continuous flow mode. Data were reported relative to standard mean ocean water (SMOW). Instrument precision was 1.2 ? SE for ?D and 0.3 ? SE for ?18O. I separated Sphagnum leaves from the bog and moat cores, and ran whole organic matter samples for ?D and ?18O stable isotopes. To determine the correlation between ?D and ?18O stable isotopes in peat leaves and bog water, I analyzed samples of Sphagnum and adjacent surface water. I collected surface water samples without headspace and refrigerated at 4 ?C until sample analysis. Snow samples were kept frozen until analysis. I refrigerated surface sample Sphagnum leaves from branches directly below the capitulum after harvest until analysis for ?D and ?18O stable isotopes. I identified Sphagnum samples to species. This data set was collected to relate ?D and ?18O to fires, changes in succession, changes in hydrology, and diatom assemblages.
Growing Season D and 18O isotope data for a core from the center and moat of the BBC collapse scar: Bonanza Creek Experimental Forest Flood Plains
This data set contains D and 18O data for a core from the center and moat (0 and 6 m) of the BBC collapse scar. Two well-preserved cores from the center of the bog was collected in March 2003 with a gasoline-powered permafrost corer. Cores were stored frozen and sampled using a radial saw. The core was sampled every two cm for macrofossil, diatom analysis and chemistry. Oxygen isotope ratios in aquatic cellulose has been shown to be a reliable tracer of lakewater isotope ratios (Sauer et al., 2001). I predicted that ?D and ?18O signatures in Sphagnum leaves would respond to enrichment and depletion in the bog water over time, providing an independent line of evidence for diatom-inferred hydrologic change. All isotope samples were processed by the Alaska Stable Isotope Facility using a Thermo Finnigan TC EA and Deltaplus XL mass spectrometer (Thermo Electron Corporation, Bremen, Germany) in continuous flow mode. Data were reported relative to standard mean ocean water (SMOW). Instrument precision was 1.2 ? SE for ?D and 0.3 ? SE for ?18O. I separated Sphagnum leaves from the bog and moat cores, and ran whole organic matter samples for ?D and ?18O stable isotopes. To determine the correlation between ?D and ?18O stable isotopes in peat leaves and bog water, I analyzed samples of Sphagnum and adjacent surface water. I collected surface water samples without headspace and refrigerated at 4 ?C until sample analysis. Snow samples were kept frozen until analysis. I refrigerated surface sample Sphagnum leaves from branches directly below the capitulum after harvest until analysis for ?D and ?18O stable isotopes. I identified Sphagnum samples to species. This data set was collected to relate ?D and ?18O to fires, changes in succession, changes in hydrology, and diatom assemblages.
Average D and 18O isotope data for a core from the center and moat of the BBC collapse scar: Bonanza Creek Experimental Forest Flood Plains
This data set contains D and 18O data for a core from the center and moat (0 and 6 m) of the BBC collapse scar. Two well-preserved cores from the center of the bog was collected in March 2003 with a gasoline-powered permafrost corer. Cores were stored frozen and sampled using a radial saw. The core was sampled every two cm for macrofossil, diatom analysis and chemistry. Oxygen isotope ratios in aquatic cellulose has been shown to be a reliable tracer of lakewater isotope ratios (Sauer et al., 2001). I predicted that ?D and ?18O signatures in Sphagnum leaves would respond to enrichment and depletion in the bog water over time, providing an independent line of evidence for diatom-inferred hydrologic change. All isotope samples were processed by the Alaska Stable Isotope Facility using a Thermo Finnigan TC EA and Deltaplus XL mass spectrometer (Thermo Electron Corporation, Bremen, Germany) in continuous flow mode. Data were reported relative to standard mean ocean water (SMOW). Instrument precision was 1.2 ? SE for ?D and 0.3 ? SE for ?18O. I separated Sphagnum leaves from the bog and moat cores, and ran whole organic matter samples for ?D and ?18O stable isotopes. To determine the correlation between ?D and ?18O stable isotopes in peat leaves and bog water, I analyzed samples of Sphagnum and adjacent surface water. I collected surface water samples without headspace and refrigerated at 4 ?C until sample analysis. Snow samples were kept frozen until analysis. I refrigerated surface sample Sphagnum leaves from branches directly below the capitulum after harvest until analysis for ?D and ?18O stable isotopes. I identified Sphagnum samples to species. This data set was collected to relate ?D and ?18O to fires, changes in succession, changes in hydrology, and diatom assemblages.
Bonanza Creek Experimental Forest GIS Data: Stream Lines
This data package contains the streams lines generated for 63,360 Digital Line Grafics (DLG) in and near our research areas in the Bonanza Creek Experimental forest. Geospatial_Data_Presentation_Form: vector digital data.
Bonanza Creek Experimental Forest GIS Data: Spot 5 Imagery
Spot 5 pan-sharpened satellite image in the Standard Creek area of the Tanana Valley, Alaska. This image was acquired and processed as part of the "Vegetation and Community Mapping of the Tanana Valley" project, conducted cooperatively by the State of Alaska Department of Natural Resources, Division of Forestry and Tanana Chiefs Conference. Originator: State of Alaska, Dept. of Nat. Resources, Division of Forestry. Publication_Date: 3/21/05. Geospatial_Data_Presentation_Form: remote-sensing image.
Bonanza Creek Experimental Forest GIS Data: Digital Elevation Model (DEM)
This file contains one of many raster grids of the Elevation Derivatives for National Applications (EDNA), a multi-layered database that provides systematic and consistent topographically-derived hydrologic derivatives. The filled DEM grid was created from the original elevation data by filling all of the depressions, or sinks, in the original DEM. To create this grid, an algorithm was used to loacted and fill all depressions or sinks where there was no flow from pixel to pixel. During this process, efforts were made to maintain natural sink features. Originator: U.S. Geological Survey. Publication_Date: 2006. Title: bcef_dem.tif. Edition: Stage I Data. Geospatial_Data_Presentation_Form: Remote-sensing image. Series_Information: Series_Name: Elevation Derivatives for National Applications (EDNA). Publication_Information: Publication_Place: USGS EROS, Sioux Falls, South Dakota. Publisher: U.S. Geological Survey.
Bonanza Creek Experimental Forest GIS Data: Reasearch Area Boundary (NAD83)
This data package contains the area boundary line for the Bonanza Creek Experimental forest in ArcGIS format. Geospatial_Data_Presentation_Form: vector digital data.
Snowshoe hare physical data in Bonanza Creek Experimental Forest: 1999-Present
Snowshoe hares, Lepus americanus, are a 'keystone' prey species in northern boreal forests and experience population fluctuations of 8-11-years. Despite intense responses of both vegetation and predators to changes in hare densities, landscape-scale comparisons of hare populations in Alaska have been limited to qualitative descriptions. We conducted capture-recapture studies of snowshoe hares at 5 locales in the Tanana valley, from Tok in the east to Clear in the west from 1999 to 2002. Snowshoe hare densities were highest in 1999 ( =6.36 ha-1, SE=0.63) and declined thereafter. We were unable to detect declines in apparent survival during declining densities in our study populations. Movement distances did not vary temporally and persistence of individuals through declining densities may be associated positively with body condition at the peak. The relationship of hare pellets and hare densities was weak and limits the utility of this methodology for estimating hare densities in Interior Alaska.
Snowshoe hare pellet count data in Bonanza Creek Experimental Forest
Snowshoe hares, Lepus americanus, are a 'keystone' prey species in northern boreal forests and experience population fluctuations of 8-11-years. Despite intense responses of both vegetation and predators to changes in hare densities, landscape-scale comparisons of hare populations in Alaska have been limited to qualitative descriptions. We conducted capture-recapture studies of snowshoe hares at 5 locales in the Tanana valley, from Tok in the east to Clear in the west from 1999 to 2002. Snowshoe hare densities were highest in 1999 ( =6.36 ha-1, SE=0.63) and declined thereafter. We were unable to detect declines in apparent survival during declining densities in our study populations. Movement distances did not vary temporally and persistence of individuals through declining densities may be associated positively with body condition at the peak. The relationship of hare pellets and hare densities was weak and limits the utility of this methodology for estimating hare densities in Interior Alaska.
Eight Mile Lake Research Watershed, Carbon in Permafrost Experimental Heating and Drying Research (CiPEHR and DryPEHR): Weekly 13C Keeling Plot Signatures of Ecosystem Respiration from CiPEHR, DryPEHR and vegetation removal plots, and auxilliary data, 2015
The Carbon in Permafrost Experimental Heating Research (CiPEHR) project addresses the following questions: 1) Does ecosystem warming cause a net release of C from the ecosystem to the atmosphere?, 2) Does the decomposition of old C, that comprises the bulk of the soil C pool, influence ecosystem C loss?, and 3) How do winter and summer warming alone, and in combination, affect ecosystem C exchange? We are answering these questions using a combination of field and laboratory experiments to measure ecosystem carbon balance and radiocarbon isotope ratios at a warming experiment located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. How does warming and water table change impact the phenology of dominant plant species? We are answering these questions using a combined warming and drying experiment (DryPEHR), which is situated with the Carbon in Permafrost Experimental Heating Research (CiPEHR) project and located in an upland tundra field site near Healy, Alaska in the foothills of the Alaska Range. Warming treatment here refers to growing season air temperature warming (~1C) using open top chambers (OTC) combined with soil 'warming' using snow fences during the snow covered months. Drying is achieved using an automated pumping system that lowers the water table in the dry plots. Soil warming and OTC air warming on CIPEHR plots began in 2008; OTCs and drying on DryPEHR in 2011, though the soil warming effect had legacy since 2008. Vegetation removal was done outside the CiPEHR footprint, in July 2012. All vegetation was clipped at the surface and plots were trenched to 30cm, regrowth was prevented by frequent weeding and by 2015 very little new growth was observed in the plots. Vegetation removal plots were paired with undisturbed, vegetated plots. The data presented here specifically addresses the questions, 1) What is the seasonal signal of ecosystem respiration 13C during the growing season, from snow melt to snow fall, 2) How
Hubbard Brook Experimental Forest: Landscape scale (valley-wide) soil carbon and nitrogen cycling data
The valley-wide plots are a grid of 431 sites along fifteen N–S transects established at 500-m intervals spanning the entire Hubbard Brook Valley. This dataset includes total soil carbon, nitrogen and organic matter content, potential net nitrogen mineralization and nitrification rates, microbial respiration rates, soil water content and holding capacity, soil ammonium and nitrate concentrations, soil pH, and tree composition in a subset of 100 randomly selected plots in 2000. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station. An analysis of these data can be found in: Venterea, R. T., Lovett, G. M., Groffman, P. M., & Schwarz, P. A. (2003). Landscape patterns of net nitrification in a northern hardwood-conifer forest. Soil Science Soc. Amer. J., 67, 527–539. https://doi.org/10.2136/sssaj2003.5270
Hubbard Brook Experimental Forest: Hyperspectral Foliar N map and associated field data, 2012
A canopy nitrogen map was created for the Hubbard Brook Experimental Forest and watersheds using airborne imaging spectrometer data collected by SpecTIR LLC (Reno, NV) on August 7, 2012, and associated field data. Leaf samples collected in the field were analyzed for nitrogen concentration, scaled to plot (whole canopy) level, and related to airborne imaging spectrometer reflectance data using partial least squares regression modeling to derive spatially explicit estimates of canopy nitrogen concentration (mass-based) for the spatial extent of the airborne imagery.
Hubbard Brook Experimental Forest: Log decomposition sensor data
This data set documents the temporal and spatial variation of soil and deadwood moisture, and nearby microclimate, for the a four-month period from June to October 2018. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and main tained by the USDA Forest Service, Northern Research Station.
Hubbard Brook Experimental Forest: Watershed 5 stem origin tracking data
W5 was experimentally whole-tree harvested in the winter of 1983-84. The initial post-harvest surveys were conducted by Jeffrey Hughes in 1984. The species and stem origin (i.e. stem grew from seed, sprouted from a cut stem or was an established stem post-harvest) for all stems in the 1m2 plots were recorded. This data set summarizes the apparent “winners” in both 1984 and 30 years later in 2014 (some evaluated in 2015). There were a total of 13 surveys in these plots that helped clarify the outcomes over time. This data set summarizes from the larger data set. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Telemetry mark-recapture data of the Northern Spring Salamander (Gyrinophilus porphyriticus), Hubbard Brook Experimental Forest, 2019 – 2021
This data set includes spatially explicit mark-recapture data of the Northern Spring Salamander (Gyrinophilus porphyriticus) collected via telemetry during the summer months (June – September) from 2019 - 2021 from eight reaches in multiple streams in the Hubbard Brook Experimental Forest. Salamanders were captured by hand and marked with PIT-tags. Telemetry surveys occurred weekly. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station. These data are being used to publish the following papers: Cochrane, M. M., B. R. Addis, L. K. Swartz, and W. H. Lowe. 2023. Individual and population growth rates decline with watershed area in a stream salamander. In review Ecology. Cochrane, M. M., and W. H. Lowe. 2023. Floods increase downstream movement of adult and larval life stages of a headwater stream salamander. In prep Freshwater Biology.
Catalog of NCBI sequence read archive (SRA) data for salamanders at the Hubbard Brook Experimental Forest 2012-2021
This project was designed to describe fine-scale population genetic differentiation of the stream salamander Gryinophilus porphyriticus among five study streams in the Hubbard Brook Experimental Forest. The data are paired with intensive capture-recapture data to assess direct fitness effects of individual genetic diversity, including effects of individual multilocus heterozygosity on stage-specific survival probabilities. This dataset publishes a manifest of the genomic sequence reads submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA). These samples are published at NCBI under the BioProject ID 1090913 (https://www.ncbi.nlm.nih.gov/bioproject/1090913). The tables here include sample metadata and the NCBI URLs to each sample. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Climate Change Across Seasons Experiment (CCASE) at the Hubbard Brook Experimental Forest: Tree Growth Data in support of "Declining Winter Snowpack Offsets Carbon Storage Enhancement from Growing Season Warming in Northern Temperate Forest Ecosystems", Conrad-Rooney et al. PNAS 2025
Data associated with the publication: Conrad-Rooney E, AB Reinmann, PH Templer. Declining Winter Snowpack Offsets Carbon Storage Enhancement from Growing Season Warming in Northern Temperate Forest Ecosystems. Proceedings of the National Academy of Sciences, 2025. This dataset includes cumulative stem biomass carbon data (from pre-treatment in 2012 until 2022) and annual stem biomass growth rates (not cumulative) for 2015-2022 for the red maple trees at the Climate Change Across Seasons Experiment. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Climate Change Across Seasons Experiment (CCASE) at the Hubbard Brook Experimental Forest: Soil Temperature, Soil Frost, and Snow Depth Data in support of "Declining Winter Snowpack Offsets Carbon Storage Enhancement from Growing Season Warming in Northern Temperate Forest Ecosystems", Conrad-Rooney et al. PNAS 2025
Data associated with the publication: Conrad-Rooney E, AB Reinmann, PH Templer. Declining Winter Snowpack Offsets Carbon Storage Enhancement from Growing Season Warming in Northern Temperate Forest Ecosystems. Proceedings of the National Academy of Sciences, 2025. This dataset includes soil temperature (winter 2021-2022) and snow depth and frost depth (winter 2022-2023) at the Climate Change Across Seasons Experiment. These data were gathered as part of the Hubbard Brook Ecosystem Study (HBES). The HBES is a collaborative effort at the Hubbard Brook Experimental Forest, which is operated and maintained by the USDA Forest Service, Northern Research Station.
Jornada Experimental Range (USDA-ARS) monthly stocking data and pasture shape files from 1915 to 1952
This data package contains two types of data for the Jornada Experimental Range (JER) from 1915 to 1952: 1) shape files containing polygons and attribute tables that represent the pasture configurations on the Jornada Experimental Range and 2) monthly stocking data from these pastures. The livestock represented in the stocking data comprise cattle, horse, sheep, and goats. Grazing goats were infrequent and are grouped with sheep in the source data. As such for this data set, they are included in the sheep category. Stocking data are expressed in animal unit months (AUM), which is based on metabolic weight. This data package provides finer resolution AUM data than knb-lter-jrn.210412001, which presents the annual stocking data for the entire JER from 1916 to 2001. The stocking data in this package begins in June of 1915 and continues through December of 1952, the last year for which the researchers on this project have verified and digitized historical pasture configurations on the JER. https://portal.edirepository.org/nis/mapbrowse?scope=knb-lter-jrn&identifier=210412001
Jornada Basin and Experimental Range Mesquite Herbicide Project (JERHM) Connectivity Modifier Data, 2023
This dataset includes plant community composition, plant litter, soil depth, and shrub interspace fetch distance data collected in 2023 as part of the Jornada Experimental Range Herbicide Mesquite Project (JERHM). Data were collected to characterize plant community and ecosystem resource (plant litter, soil depth) responses to the use of Connectivity Modifiers (ConMods), which are used to reduce bare ground connectivity, alongside herbicide application to reduce honey mesquite (Neltuma glandulosa [=Prosopis glandulosa]) encroachment. ConMod and control (rebar-only) arrays were installed on 16 paired, 5-hectare plots, with one plot within each pair randomly selected to receive herbicide treatment in 2021 to reduce N. glandulosa abundance, or left untreated for comparison. Approximately 6 months after herbicide application (spring 2022), 12-unit ConMod and control (rebar-only) arrays were installed on experimental plots within 8 randomly selected N. glandulosa shrub interspaces (n = 8 arrays per plot, 4 per array type). Data were collected in the fall of 2023 at the end of the second growing season following array installation. There are no immediate plans to continue data collection.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.