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199
datasets available to search
ShareScore release 0.9.0
Dataset results
199 results for “genome reference”
Human reference genome analysis sets
<p>For details, see the companion <a href="https://github.com/lh3/ref-gen">GitHub repo</a>.</p>
Data from: Linkage disequilibrium and inversion-typing of the Drosophila melanogaster Genome Reference Panel
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Data from: "Development of the draft genome sequence of the marbled flounder Pseudopleuronectes yokohamae as a reference of population genomic analysis" in Genomic Resources Notes accepted 1 February 2015 – 31 March 2015
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Data from: De novo assembly of a chromosome-level reference genome of red spotted grouper (Epinephelus akaara) using nanopore sequencing and Hi-C
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Data from: Leishmania naiffi and Leishmania guyanensis reference genomes highlight genome structure and gene evolution in the Viannia subgenus
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Data from: Chromosomal level reference genome of Tachypleus tridentatus provides insights into evolution and adaptation of horseshoe crabs
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Data from: Reference genome of Lumpfish Cyclopterus lumpus Linnaeus provides evidence of male heterogametic sex determination through the AMH pathway
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Data from: GIbPSs: a toolkit for fast and accurate analyses of genotyping-by-sequencing data without a reference genome
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VCF of structural variant calls of Nanopore data aligned to dm6 reference genome
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Contradictory of gene expression signatures for clinical prognostic prediction caused by update of reference genome and annotation
GEO Series GSE143486. Homo sapiens. 30 samples. Type: Expression profiling by high throughput sequencing.
Aegilops tauschii reference genome sequence Aet v5.0 including annotation of small RNAs and reannotation of protein-coding genes
GEO Series GSE169198. Aegilops tauschii. 6 samples. Type: Non-coding RNA profiling by high throughput sequencing.
The BLUEPRINT Murine Lymphocyte Epigenome Reference Resource. [Whole Genome Bisulfite-Seq_OX]
GEO Series GSE94675. Mus musculus. 8 samples. Type: Methylation profiling by high throughput sequencing.
CRSP: Comparative RNA-seq pipeline for species lacking both of sequenced genomes and reference transcripts
GEO Series GSE194237. Homo sapiens. 1 samples. Type: Expression profiling by high throughput sequencing.
Comparative Genomic Hybridizaions of 3D7∆PfSir2a and NF54 compared to reference strain 3D7
GEO Series GSE61940. Plasmodium falciparum; Plasmodium falciparum 3D7; Plasmodium falciparum NF54. 2 samples. Type: Genome variation profiling by genome tiling array.
Differential DNA Methylation Analysis without a Reference Genome
GEO Series GSE74026. Cyprinus carpio; Bos taurus; Homo sapiens. 44 samples. Type: Methylation profiling by high throughput sequencing.
Chromosome-level reference genome of tetraploid Isoetes sinensis provides insights into evolution and adaption of lycophytes
GEO Series GSE198195. Isoetes sinensis. 3 samples. Type: Expression profiling by high throughput sequencing.
129, AJ and Balb CGH against C57 reference on Agilent whole genome and custom mouse long oligonucleotide arrays
GEO Series GSE9669. Mus musculus. 6 samples. Type: Genome variation profiling by genome tiling array.
Reference-guided genome assembly of long non-coding RNA transcripts reveals target genes associated with Crohn’s disease
GEO Series GSE317503. Homo sapiens. 140 samples. Type: Expression profiling by high throughput sequencing.
The BLUEPRINT Murine Lymphocyte Epigenome Reference Resource. [Whole Genome Bisulfite-Seq]
GEO Series GSE94674. Mus musculus. 8 samples. Type: Methylation profiling by high throughput sequencing.
Revealing novel transcribed sequences absent from the human reference genome by RNA-Seq
GEO Series GSE30251. Homo sapiens. 2 samples. Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.