Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
150
datasets available to search
ShareScore release 0.9.0
Dataset results
150 results for “host microbiome”
High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing [Ileum, with in situ Polyadenylation]
GEO Series GSE277197. Mus musculus. 1 samples. Type: Other.
Integrating microbial GWAS and single cell transcriptomics reveals associations between host cell populations and the gut microbiome
GEO Series GSE289267. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Dual-transcriptomic analysis of human nasal transcriptome and microbiome reveals host-bacteria interactions associated with symptomatic respiratory infection
GEO Series GSE309135. Homo sapiens. 202 samples. Type: Expression profiling by high throughput sequencing; Other.
The microbiome buffers tadpole hosts from the deleterious effects of heat stress: a hologenomic approach to understand host-microbe interactions under warming conditions.
GEO Series GSE208646. Lithobates clamitans. 20 samples. Type: Expression profiling by high throughput sequencing.
Association of sputum microbiome with exacerbations, patient subgroups and host response in chronic obstructive pulmonary disease
GEO Series GSE112165. Homo sapiens. 41 samples. Type: Expression profiling by array.
High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing [Ileum, without in situ Polyadenylation]
GEO Series GSE277196. Mus musculus. 1 samples. Type: Other.
High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing
GEO Series GSE276866. Mus musculus. 8 samples. Type: Other.
High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing [Spatial transcriptomics]
GEO Series GSE316608. Mus musculus. 3 samples. Type: Other.
Host-microbiome response to hyperbaric oxygen treatment in ulcerative colitis
GEO Series GSE152229. Homo sapiens. 13 samples. Type: Expression profiling by high throughput sequencing.
High Resolution Spatial Mapping of Microbiome-Host Interactions via in situ Polyadenylation and Spatial RNA Sequencing (Stereoseq)
GEO Series GSE308507. Mus musculus. 5 samples. Type: Other.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.