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Plum Island Ecosystems site, station Middlesex County, MA (FIPS 25017), study of population (urban) in units of number on a yearly timescale
The EcoTrends project was established in 2004 by Dr. Debra Peters (Jornada Basin LTER, USDA-ARS Jornada Experimental Range) and Dr. Ariel Lugo (Luquillo LTER, USDA-FS Luquillo Experimental Forest) to support the collection and analysis of long-term ecological datasets. The project is a large synthesis effort focused on improving the accessibility and use of long-term data. At present, there are ~50 state and federally funded research sites that are participating and contributing to the EcoTrends project, including all 26 Long-Term Ecological Research (LTER) sites and sites funded by the USDA Agriculture Research Service (ARS), USDA Forest Service, US Department of Energy, US Geological Survey (USGS) and numerous universities. Data from the EcoTrends project are available through an exploratory web portal (http://www.ecotrends.info). This web portal enables the continuation of data compilation and accessibility by users through an interactive web application. Ongoing data compilation is updated through both manual and automatic processing as part of the LTER Provenance Aware Synthesis Tracking Architecture (PASTA). The web portal is a collaboration between the Jornada LTER and the LTER Network Office. The following dataset from Plum Island Ecosystems (PIE) contains population (urban) measurements in number units and were aggregated to a yearly timescale.
Virgin Islands National Park: Coral Reef: Population Dynamics: Scleractinian corals
These data are evidence of the the long-term dynamics of shallow coral reefs along the south coast of St. John from as early as 1989. These data come from the long term site at 9 m depth known as Yawzi Point. These data are representative of the Video Transects (VT) starting in 1989 (see Edmunds and Wirman 1991, MEPS 78: 201-204). All images analyzed using 200 randoms dots placed at random on their surface and the substratum beneath each dot annotated (~371,800 decisions by Nov 2017). Hurricanes Irma and Maria struck in September 2017. Because of this, sampling was completed in July and November of 2017. Data are available upon request for 1989 (raw data lost), 1992, 1993, and 1994. These images were analyzed with a coarser resolution that is not consistent with the current format.
Subspecies and Distribution. E. s. semicaudata Peale, 1848 - Samoa (Savai'i and Upolu Is), American Samoa (Ta'u Is), Fiji (Rotuma, Kuata in Yusawa Group, Taveuni, Ovalau, and Lakeba Is), and Tonga (Niuafo'ou and 'Eua Is, and likely occurs on other islands in the group). Not recorded in Tutuila (American Samoa) since 1976 despite dedicated searches for cave roosts and use of echolocation detectors and also likely extinct on Vitu Levu (Fiji) where the last specimens were collected in 1979. E. s. palauensis Yamashima, 1932 - Palau Is (including Babeldaob, Koror, Peleliu, and Angaur). E. s. rotensis Yamashima, 1943 - Northern Mariana Is and Guam I, last surviving population is currently restricted to tiny Aguigan I; it appears to be extirpated on Anatahan, Tonowas, Rota, Saipan, and Tinian Is, and on Guam I. E. s. sulcataG. S. Miller, 1911 — Caroline Is (Chuuk and Pohnpei Is). in Emballonuridae
Subspecies and Distribution. E. s. semicaudata Peale, 1848 - Samoa (Savai'i and Upolu Is), American Samoa (Ta'u Is), Fiji (Rotuma, Kuata in Yusawa Group, Taveuni, Ovalau, and Lakeba Is), and Tonga (Niuafo'ou and 'Eua Is, and likely occurs on other islands in the group). Not recorded in Tutuila (American Samoa) since 1976 despite dedicated searches for cave roosts and use of echolocation detectors and also likely extinct on Vitu Levu (Fiji) where the last specimens were collected in 1979. E. s. palauensis Yamashima, 1932 - Palau Is (including Babeldaob, Koror, Peleliu, and Angaur). E. s. rotensis Yamashima, 1943 - Northern Mariana Is and Guam I, last surviving population is currently restricted to tiny Aguigan I; it appears to be extirpated on Anatahan, Tonowas, Rota, Saipan, and Tinian Is, and on Guam I. E. s. sulcataG. S. Miller, 1911 — Caroline Is (Chuuk and Pohnpei Is).
Phylogeography and population genetics of pine butterflies: sky islands increase genetic divergence
<p>The sky islands of southeastern Arizona (AZ) mark a major transition zone between tropical and temperate biota and are considered a neglected biodiversity hotspot. Dispersal ability and host plant specificity are thought to impact the history and diversity of insect populations across the sky islands. We aimed to investigate the population structure and phylogeography of two pine-feeding pierid butterflies, the pine white (<i>Neophasia menapia</i>) and the Mexican pine white (<i>N. terlooii</i>), restricted to these "islands" at this transition zone. Given their dependence on pines as the larval hosts, we hypothesized that habitat connectivity affects population structure and is at least in part responsible for their allopatry. We sampled DNA from freshly collected butterflies from 17 sites in the sky islands and adjacent high-elevation habitats and sequenced these samples using ddRADSeq. Up to 15,399 SNPs were discovered and analyzed in population genetic and phylogenetic contexts with Stacks and pyRAD pipelines. Low genetic differentiation in <i>N. menapia</i> suggests that it is panmictic. Conversely, there is strong evidence for population structure within <i>N. terlooii</i>. Each sky island likely contains a population of <i>N. terlooii</i>, and clustering is hierarchical, with populations on proximal mountains being more related to each other. The <i>N. menapia</i> habitat, which is largely contiguous, facilitates panmixia, while the <i>N. terlooii</i> habitat, restricted to the higher elevations on each sky island, creates distinct population structure. Phylogenetic results corroborate those from population genetic analyses. The historical climate-driven fluxes in forest habitat connectivity have implications for understanding the biodiversity of fragmented habitats.</p>
Population structure of Rosa spinosissima L. on the Frisian Islands and introgression from cultivated material
<i>Rosa spinosissima</i> L. is part of the highly dynamic coastal habitat of the Wadden Sea, between the coast of northwestern continental Europe and the Frisian Islands. Plants of this species grow clonally via root suckers to form large patches, which stabilize dunes and help to protect the islands and used for this purpose locally on the island Sylt. <i>Rosa spinosissima</i> plants are affected by both water and wind in their harsh environment, and are threatened by human impact via habitat destruction and introduction of foreign species. In these northern parts of its range <i>R. spinosissima</i> is categorized as endangered. The population structure of <i>R. spinosissima</i> was investigated using ten microsatellite loci and 195 individuals of Frisian Island populations and European coastal continental samples. DAPC, Kmeans and Structure analyses were conducted to study the genetic composition and integrity of these natural populations relative to cultivated and nursery material mostly consisting of central continental genotypes. The DAPC and Structure analyses differentiated populations of the Frisian Islands between each other and separated them from nursery samples, but some natural populations showing an impact of nursery and cultivated genotypes. In addition, some clonal patches of <i>R. spinosissima</i> were detected. Our results show that the natural Frisian Island populations of <i>R. spinosissima</i> are threatened by the introduction of nonadaptive genotypes into the gene pool.
Data from: Kinship and association in a highly social apex predator population, killer whales at Marion Island
Social structure is a core element of population biology, influenced by intrinsic and environmental factors. Intra-taxon comparisons of social organization are useful in elucidating the role of such ecological determinants of sociality. Killer whales Orcinus orca are widely distributed, social delphinids with diverse morphology, diet, behaviour, and genetics, but few studies have quantitatively examined social structure in this species. We used 7 years of individual identification data on killer whales at Marion Island, Southern Ocean, to calculate the half-weight association index among 39 individuals, creating a weighted association network. There were long-term associations between individuals, though associations were dynamic over time. We defined 8 social modules using a community detection algorithm and these typically contained 3 individuals of various ages and sexes. Pairwise genetic relatedness among 20 individuals was not significantly correlated with association index. Individuals were on average more related within than between social modules, but social modules contained related as well as unrelated individuals. Likely parent pairs of 6 individuals indicated mating between social modules.
Data from: Contrasting genetic responses to population fragmentation in a coevolving fig and fig wasp across a mainland-island archipelago
Interacting species of pollinator–host systems, especially the obligate ones, are sensitive to habitat fragmentation, due to the nature of mutual dependence. Comparative studies of genetic structure can provide insights into how habitat fragmentation contributes to patterns of genetic divergence among populations of the interacting species. In this study, we used microsatellites to analyse genetic variation in Chinese populations of a typical mutualistic system – Ficus pumila and its obligate pollinator Wiebesia sp. 1 – in a naturally fragmented landscape. The plants and wasps showed discordant patterns of genetic variation and geographical divergence. There was no significant positive relationship in genetic diversity between the two species. Significant isolation-by-distance (IBD) patterns occurred across the populations of F. pumila and Wiebesia sp. 1 as whole, and IBD also occurred among island populations of the wasps, but not the plants. However, there was no significant positive relationship in genetic differentiation between them. The pollinator populations had significantly lower genetic variation in small habitat patches than in larger patches, and three island pollinator populations showed evidence of a recent bottleneck event. No effects of patch size or genetic bottlenecks were evident in the plant populations. Collectively, the results indicate that, in more fragmented habitats, the pollinators, but not the plants, have experienced reduced genetic variation. The contrasting patterns have multiple potential causes, including differences in longevity and hence number of generations experiencing fragmentation; different dispersal patterns, with the host's genes dispersed as seeds as well as a result of pollen dispersal via the pollinator; asymmetrical responses to fluctuations in partner populations; and co-existence of a rare second pollinating wasp on some islands. These results indicate that strongly interdependent species may respond in markedly different ways to habitat fragmentation.
Data from: Maintenance of genetic diversity in an introduced island population of Guanacos after seven decades and two severe demographic bottlenecks: implications for camelid conservation
Fifteen Guanacos were introduced to Staats Island in Falklands/Malvinas archipelago from Patagonia in the 1930s. After introduction, the Guanaco population increased to almost 400 animals that retained a footprint of the founding effect and bottleneck reflected in the genetic status of this isolated population. The goals of this study were to (i) make a genetic assessment of this island population through comparisons with mainland populations and simulation, and (ii) assess the likely source population of the introduced Guanacos. Genetic variation estimated from 513 bp of mitochondrial DNA sequence and 15 microsatellite loci were compared among 154 Guanacos collected from eight localities, including the adjacent mainland and the islands of Tierra del Fuego and Staats Island. Of the 23 haplotypes observed among our samples, the Staats Island population only contained three haplotypes, all of which were shared with the Monte Leon population in southern Patagonia. Mitochondrial DNA and microsatellite variation on Staats Island were comparable to most mainland populations and greater than those observed on Tierra del Fuego. Patterns of genetic structure suggest that the Staats Island Guanaco population was founded with animals from southern Patagonia (as opposed to northern Patagonia or Tierra del Fuego), but that effective reductions in population size lasted only a few generations and that surviving animals were a random sample of the pre-bottleneck genetic variation.
Data from: Biogeography in a continental island: population structure of the relict endemic centipede Craterostigmus tasmanianus (Chilopoda, Craterostigmomorpha) in Tasmania using 16S rRNA and COI
We used 16S ribosomal RNA (rRNA) and cytochrome c oxidase subunit I (COI) sequence data to investigate the population structure in the centipede Craterostigmus tasmanianus Pocock, 1902 (Chilopoda: Craterostigmomorpha: Craterostigmidae) and to look for possible barriers to gene flow on the island of Tasmania, where C. tasmanianus is a widespread endemic. We first confirmed a molecular diagnostic character in 28S rRNA separating Tasmanian Craterostigmus from its sister species Craterostigmus crabilli (Edgecombe and Giribet 2008) in New Zealand and found no shared polymorphism in this marker for the 2 species. In Tasmania, analysis of molecular variance analysis showed little variation at the 16S rRNA and COI loci within populations (6% and 13%, respectively), but substantial variation (56% and 48%, respectively) among populations divided geographically into groups. We found no clear evidence of isolation by distance using a Mantel test. Bayesian clustering and gene network analysis both group the C. tasmanianus populations in patterns which are broadly concordant with previously known biogeographical divisions within Tasmania, but we did not find that genetic distance varied in a simple way across cluster boundaries. The coarse-scale geographical sampling on which this study was based should be followed in the future by sampling at a finer spatial scale and to investigate genetic structure within clusters and across cluster boundaries.
Data from: Genomic tests of the species-pump hypothesis: recent island connectivity cycles drive population divergence but not speciation in Caribbean crickets across the Virgin Islands
Harnessing the power of genomic scans, we test the debated 'species pump' hypothesis that implicates repeated cycles of island connectivity and isolation as drivers of divergence. This question has gone understudied given the limited resolution of past molecular markers for studying such dynamic phenomena. With an average of 32000 SNPs from the genome of 136 individuals from ten populations of a Caribbean flightless ground cricket species (Amphiacusta sanctaecrucis) and a complementary set of statistical approaches, we infer a stepping-stone colonization model and high levels of genetic differentiation across the Virgin Islands, which have been periodically inter-connected until 8 ka. Estimates of divergence times from models based on the site frequency spectrum coincide with a period of repeated connection and fragmentation of the islands at 75–130 ka. These results are consistent with a role of island connectivity cycles in promoting genomic divergence and indicate that the genetic distinctiveness of island populations has persisted despite subsequent and extended interisland connections identified from bathymetric data. We discuss these findings in the broader context of Caribbean biogeography, and more specifically why high levels of genomic divergence across the Virgin Islands associated with repeated connectivity cycles do not actually translate into species diversification.
Data from: Landscape and oceanic barriers shape dispersal and population structure in the island nematode, Pristionchus pacificus
Despite the biological importance and diversity of nematodes, little is known of the factors influencing their dispersal and shaping their evolutionary history. Populations of the cosmopolitan species Pristionchus pacificus are characterized by high genetic diversity and strong spatial structure, which contrasts with patterns detected in nematode species such as Caenorhabditis elegans. The environmentally heterogeneous volcanic Mascarene Islands provide an ideal setting for investigating fine-scale patterns of nematode migration and gene flow. Based on the analysis of data from 19 nuclear microsatellites and one mitochondrial marker, we infer support for the colonization of both La Réunion Island and Mauritius from similar multiple geographical sources. Although the long-term persistence of populations on both islands is well supported, the historical colonization of one island from the other cannot be discounted. In fact, periodic, bi-directional migration between the islands following their initial colonization is strongly supported in isolation with migration analyses, supporting the occurrence of rare trans-oceanic dispersal events in P. pacificus. Through a combination of population and landscape genetic analyses we also infer non-uniform dispersal across the landscape on the island of La Réunion, probably mediated by the movements of beetle hosts. Collectively, we show that gene flow in P. pacificus is limited by environmental and oceanic barriers, and shaped by the intricacies of the nematode–beetle host interaction
Data from: Strategic adjustments in sperm production within and between two island populations of house mice
Sperm production is physiologically costly. Consequently, males are expected to be prudent in their sperm production, and tailor their expenditure according to prevailing social conditions. Differences in sperm production have been found across island populations of house mice that differ in the level of selection from sperm competition. Here, we determined the extent to which these differences represent phenotypic plasticity and/or population divergence in sperm production. We sourced individuals from two populations at the extreme levels of sperm competition, and raised them under common-garden conditions while manipulating the social experience of developing males. Males from the high-sperm competition population produced more sperm and better quality sperm than did males from the low-sperm competition population. In addition, males reared under a perceived "risk" of sperm competition produced greater numbers of sperm than males reared with "no risk." However, our analyses revealed that phenotypic plasticity in sperm production was greater for individuals from the high-sperm competition population. Our results are thus consistent with both population divergence and phenotypic plasticity in sperm production, and suggest that population level of sperm competition might affect the degree of adaptive plasticity in sperm production in response to sperm competition risk.
Data from: Assortative mating frames establishment in a young island bird population
Successful island colonizations are key events to understand range dynamic processes, but studying a young population right after it reaches establishment is a rare opportunity in natural systems. However, the genetic structure of a recently established population may offer unique insights into its colonization history and demographic processes important for a successful colonization. Here, we studied the population genetics of a recently established island population of Eurasian blackbirds (Aves: Turdus merula) located on the island of Heligoland in the German North Sea. Using microsatellites, we genotyped the majority of the island population, including the nestlings, over a four-year period between 2004 and 2007. We also genotyped high numbers of migrants on stopover and mainland individuals, as they are potential founders of the island population. We identified two genetic clusters that comply with the migrating and mainland birds respectively. While most of the island birds belong to the mainland cluster, some breeding individuals and a low fraction of the offspring belong to the genetic cluster found in migrating individuals with almost no admixture between the two, pointing to assortative mating acting on the island population. We did not find any evidence for founder events and detected deviations from Hardy-Weinberg equilibrium that disappeared in cohorts of older age that coincide with a lower number of siblings in older cohorts. The observed genetic patterns unravel a complex colonization history to which migratory and mainland birds have contributed and which is characterized by assortative mating. Further research will be directed towards habitat selection and phenotypic differences as potential drivers of assortative mating in this island population.
Data from: Genetic diversity and population divergences of an indigenous tree (Coffea mauritiana) in Reunion Island: role of climatic and geographical factors
Oceanic islands are commonly considered as natural laboratories for studies on evolution and speciation. The evolutionary specificities of islands associated with species biology provide unique scenarios to study the role of geography and climate in driving population divergence. However, few studies have addressed this subject in small oceanic islands with heterogeneous climates. Being widely distributed in Reunion Island forest, Coffea mauritiana represents an interesting model case for investigating patterns of within-island differentiation at small spatial scale. In this study, we examined the genetic diversity and population divergences of C. mauritiana using SNP markers obtained from 323 individuals across 34 locations in Reunion Island. Using redundancy analysis, we further evaluated the contribution of geographic and climatic factors to shaping genetic divergence among populations. Genetic diversity analyses revealed that accessions clustered according to the source population, with further grouping in regional clusters. Genetic relationships among the regional clusters underlined a recent process of expansion in the form of step-by-step colonization on both sides of the island. Divergence among source populations was mostly driven by the joint effect of geographic distance and climatic heterogeneity. The pattern of isolation-by-geography was in accordance with the dispersal characteristics of the species, while isolation-by-environment was mostly explained by the heterogeneous rainfall patterns, probably associated with an asynchronous flowering among populations. These findings advance our knowledge on the patterns of genetic diversity and factors of population differentiation of species native to Reunion Island, and will also usefully guide forest management for conservation.
Data from: Breeding relationships in Macaronesian Tolpis (Asteraceae-Cichorieae): F1 hybrid pollen fertility within and among populations from the Azores, Canary Islands and Madeira
The pollen fertility of F1 hybrids, ranging from progeny within natural populations to synthetic hybrids between species of Tolpis from three archipelagos in Macaronesia, was determined. Pollen fertility of F1 hybrids of inter-archipelago crosses from the Azores, Canaries, and Madeira were generally lower than crosses between populations or species in the same archipelagos. Lower pollen fertility was pronounced in hybrids between plants from the Canaries and the other archipelagos, which is concordant with a more distant phylogenetic relationship between the Canaries, and the Azores and Madeira. Lower average pollen fertility was seen between plants from different as compared to the same clades in the Canary Islands. However, low pollen fertilities were also detected between plants from some populations/species in the same archipelagos, and even among progeny of individual maternal plants. Some hybrids with reduced fertility had meiotic irregularities, suggesting chromosomal rearrangements; in other cases meiosis appeared normal. Results indicate that postzygotic isolating factors evolved subsequent to the divergence of Tolpis in the three archipelagos, but there are hybrid sterility factors among plants within each of the archipelagos, and even within some natural populations. Phylogenetic relationships in the Canary Islands indicate that divergence has occurred within the last million years. Present results implicate postzygotic factors as reproductive barriers facilitating population divergence and speciation in Macaronesian Tolpis.
Data from: Black abalone (Haliotis cracherodii) population structure shifts through deep time: Management implications for southern California's northern Channel Islands
For over 10,000 years, black abalone (Haliotis cracherodii) were an important resource in southern California, first for coastal Native Americans, then beginning in the nineteenth century, as one of the state's first commercial shellfisheries. By 1993, after years of heavy fishing, rising sea surface temperatures (SST), and the spread of withering syndrome (WS), black abalone populations declined dramatically, resulting in the closure of the Alta California fishery. After nearly 25 years of management and recovery efforts, black abalone are showing signs of ecological rebound along some Channel Island shorelines. These include the presence of juvenile abalone and increasing densities, largely from data collected by Channel Islands National Park (CINP) monitoring efforts that began in 1985. In an effort to apply deeper historical perspectives to modern fisheries management and restoration, we analyzed black abalone size data from San Miguel Island at prehistoric and historical archeological sites spanning the last 10,000 years and compared these populations to those described by CINP biologists between 1985 and 2013. We found a statistically significant relationship between SST and black abalone size distributions during the ancient record, along with dramatic shifts in population size structure toward larger individuals between the nineteenth century and modern periods. A pattern of larger mean black abalone sizes was identified during warm SSTs, when compared against intervals of cooler SSTs. Synthesis and applications. Our study provides a deep historical perspective of abalone population size distributions, patterns within these distributions through time, and parallels to modern abalone populations. Our results may help managers determine whether the current (and future) size and age structure of intertidal black abalone populations around the northern Channel Islands are "natural" and healthy, measured against the 10,000 year history of black abalone fishing in southern California.
Data from: Testing the hypothesis of loss of defences on islands across a wide latitudinal gradient of Periploca laevigata populations
PREMISE OF THE STUDY: We tested a hypothesis that predicts loss of chemical defences on island plant populations (LCDIH) as an evolutionary response to limited herbivore pressures. METHODS: Using a common garden approach, we grew 16 populations (N = 286 seedlings) of Periploca laevigata, a Mediterranean shrub for which previous studies suggested tannin-mediated responses to animal browsing. Our experimental setting represented a wide latitudinal gradient (37-15ºN) encompassing three island systems, virtually free of large herbivores, and three mainland areas. Putative chemical defences were estimated from tannin-protein precipitation assays, and inducible responses in growth and chemical traits were assessed between seasons and by subjecting plants to a pruning treatment. KEY RESULTS: We failed to find support for the LCDIH, since island populations (Canary Islands, Cape Verde) displayed increasingly higher constitutive levels of tannins at lower latitudes. Seasonality, but not experimental pruning, induced variation in levels of tannins in a consistent pattern across populations. Thus, net differences in leaf tannin concentration remained similar among geographical areas regardless of the factor considered, with latitude being the best explanatory factor for this trait over seasonal growth patterns. CONCLUSIONS: Geographical variation in total tannin pools appears to be mediated by factors other than herbivore pressure in P. laevigata. We hypothesize that abiotic correlates of latitude not considered in our study have promoted high constitutive levels of leaf tannins across Macaronesian populations, which ultimately may explain the pattern of seasonal variation and latitudinal increase from Mediterranean to subtropical Cape Verde populations. In compliance with data protection regulations, please contact the publication office if you would like to have your personal information removed from the database.
Data from: Utility of island populations in reintroduction programs—relationships between Arabian gazelles (Gazella arabica) from the Farasan Archipelago and endangered mainland populations
Understanding local adaptation and population differentiation is vital to the success of reintroduction initiatives. Like other mammals living on islands, Arabian gazelles (G. arabica) show reduced body size on the Farasan archipelago, which we corroborated in this study through morphometric analyses of skulls. In light of the steep population decline on the Arabian Peninsula—but stable population development on the archipelago—we tested the potential suitability of Farasan gazelles as a source for reintroductions on the mainland. We, therefore, investigated genetic differentiation between Farasan and mainland populations using eleven nuclear microsatellite loci and detected a distinct genetic cluster exclusively present on the archipelago, which we inferred to be separated from the mainland cluster for less than 2,000 years. About 30% of sampled individuals from Farasan Islands showed assignment to a mainland cluster with signs of ongoing introgression. Analyses using the Isolation-with-Migration model confirmed recent (probably human-induced) bidirectional exchange of gazelles between mainland and island populations. Hence, the surprisingly uniform island dwarfism most likely reflects phenotypic plasticity, i.e., altered morphology as a direct consequence of harsh environmental conditions and resource limitation on the archipelago. Should a further decline of Arabian gazelles on the mainland necessitate restocking in the future, Farasan gazelles may thus become an additional source for captive breeding programs.
Data from: Do island plant populations really have lower genetic variation than mainland populations? Effects of selection and distribution range on genetic diversity estimates
Ecological and evolutionary studies largely assume that island populations display low levels of neutral genetic variation. However, this notion has only been formally tested in a few cases involving plant taxa, and the confounding effect of selection on genetic diversity (GD) estimates based on putatively neutral markers has typically been overlooked. Here, we generated nuclear microsatellite and plastid DNA sequence data in Periploca laevigata, a plant taxon with an island-mainland distribution area, to (i) investigate whether selection affects GD estimates of populations across contrasting habitats and (ii) test the long-standing idea that island populations have lower GD than their mainland counterparts. Plastid data showed that colonization of the Canary Islands promoted strong lineage divergence within P. laevigata, which was accompanied by selective sweeps at several nuclear microsatellite loci. Inclusion of loci affected by strong divergent selection produced a significant downward bias in the GD estimates of the mainland lineage, but such underestimates were substantial (>14%) only when more than one loci under selection were included in the computations. When loci affected by selection were removed, we did not find evidence that insular Periploca populations have less GD than their mainland counterparts. The analysis of data obtained from a comprehensive literature survey reinforced this result, as overall comparisons of GD estimates between island and mainland populations were not significant across plant taxa (N=66), with the only exception of island endemics with narrow distributions. This study suggests that identification and removal of markers potentially affected by selection should be routinely implemented in estimates of GD, particularly if different lineages are compared. Furthermore, it provides compelling evidence that the expectation of low GD cannot be generalized to island plant populations.
Data from: Sex-linked and autosomal microsatellites provide new insights into island populations of the tammar wallaby
The emerging availability of microsatellite markers from mammalian sex chromosomes provides opportunities to investigate both male- and female-mediated gene flow in wild populations, identifying patterns not apparent from the analysis of autosomal markers alone. Tammar wallabies (Macropus eugenii), once spread over the southern mainland, have been isolated on several islands off the Western Australian and South Australian coastlines for between 10 000 and 13 000 years. Here, we combine analyses of autosomal, Y-linked and X-linked microsatellite loci to investigate genetic variation in populations of this species on two islands (Kangaroo Island, South Australia and Garden Island, Western Australia). All measures of diversity were higher for the larger Kangaroo Island population, in which genetic variation was lowest at Y-linked markers and highest at autosomal markers (θ=3.291, 1.208 and 0.627 for autosomal, X-linked and Y-linked data, respectively). Greater relatedness among females than males provides evidence for male-biased dispersal in this population, while sex-linked markers identified genetic lineages not apparent from autosomal data alone. Overall genetic diversity in the Garden Island population was low, especially on the Y chromosome where most males shared a common haplotype, and we observed high levels of inbreeding and relatedness among individuals. Our findings highlight the utility of this approach for management actions, such as the selection of animals for translocation or captive breeding, and the ecological insights that may be gained by combining analyses of microsatellite markers on sex chromosomes with those derived from autosomes.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.