Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
5,875
datasets available to search
ShareScore release 0.9.0
Dataset results
5,875 results for “lively”
Data Sets "Living Kombucha Electronics with Proteinoids"
<p>The data presents the electrical oscillations observed in Kombucha-proteinoid solutions with compositions of 40:60% (v/v) and 25:75% (v/v). </p>
State Comparison of Peer Recovery Worker Wages with Living Wages
<p>ZipRecruiter provides real time data on wage offers by state. I compared mean wage offers with the Glasmeier's Living Wage Calculator. Because ZipRecruiter data are real time wage offers, they can change from month to month, I archived the state wage offer data from November 30, 2023. These data are entered into an Excel spreadsheet for comparisons with living wages. Because the living wage data in the 2023 calculator are based on 2022 dollars, I inflated living wages to 2022 dollars based on the rise in prices from mid-year 2022 to mid-year 2023. </p>
Live Iterative Ptychography
<p>This deposition contains data and code for live-updating ptychographic reconstruction with ePIE, an iterative ptychography method, during ongoing data acquisition.</p> <p>Corresponding paper: <a href="https://doi.org/10.1093/mam/ozae004">https://doi.org/10.1093/mam/ozae004</a> and <a href="https://doi.org/10.48550/arXiv.2308.10674">https://doi.org/10.48550/arXiv.2308.10674</a></p>
Data from "Stability of genome-wide methylation patterns and parental environmental effects in the widespread, long-lived Lombardy poplar"
<p><strong>Data from : 'Stability of genome-wide methylation patterns and parental environmental effects in the widespread, long-lived Lombardy poplar'</strong></p> <p>An Vanden Broeck*, Tim Meese*, Pieter Verschelde, Karen Cox, Berthold Heinze, Dieter Deforce, Ellen De Meester and Filip Van Nieuwerburgh</p> <p> </p> <p>Related publication: Vanden Broeck, A.*, Meese, T.*, Verschelde, P. <em>et al.<strong> Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar</strong></em>. <em>BMC Biol</em> <strong>22</strong>, 30 (2024). https://doi.org/10.1186/s12915-024-01816-1</p> <ul> <li>* These authors contributed equally.</li> </ul> <p>--------------------------------------------------</p> <p><strong>Background: </strong>Despite the increasing number of epigenomic studies in plants, little is known about the forces that shape the methylome in long-lived woody perennials. The Lombardy poplar (<em>Populus nigra</em> cv. 'Italica' Duroi) offers an ideal opportunity to investigate the impact of the individual environmental history of trees on the methylome.</p> <p><strong>Results: </strong>We present the results of three interconnected experiments on Lombardy poplar. In the first experiment, we investigated methylome variability during a growing season and across vegetatively reproduced generations. We found that ramets collected over Europe and raised in common conditions have stable methylomes in symmetrical CG-contexts. In contrast, seasonal dynamics occurred in methylation patterns in CHH-context. In the second experiment, we investigated whether methylome patterns of plants grown in a non-parental environment correlate with the parental climate. We did not observe any biological relevant pattern that significantly correlates with the parental climate. Finally, we investigated whether the parental environment has persistent carry-over effects on the vegetative offspring's' phenotype. We combined new bud set observations of three consecutive growing seasons with former published bud set data. Using a linear mixed effects analysis, we found a statistically significant but weak short-term, parental carry-over effect on the timing of bud set. However, this effect was negligible compared to the direct effects of the offspring environment.</p> <p><strong>Conclusions: </strong>Genome-wide cytosine methylation patterns in symmetrical GC-context are stable in Lombardy poplar and appear to be mainly the result of random processes. In this widespread poplar clone, methylation patterns in GC-context can be used as bio-markers to infer a common ancestor and thus to investigate the environmental history of a specific Lombardy poplar on short time-scales. The Lombardy poplar shows high phenotypic plasticity in a novel environment which enabled this clonal tree to adapt and survive all over the temperate regions of the world.</p> <p> </p> <p><strong>ADDITIONAL FILES</strong></p> <p><strong>Additional file 1.</strong> CSV-file with information on the Lombardy poplar trees samples used for whole genome bisulfite sequencing (WGBS) in the two methylome experiments (<em>metadata</em>). The raw fastq datafiles obtained by whole genome bisulfite sequencing (WGBS) are available at the <a href="https://www.ncbi.nlm.nih.gov/geo/">Gene Expression Omnibus (GEO) database</a> (submission GSE225596).</p> <p><strong>Additional file 2.</strong> CSV-file with mapping statistics, bisulfite conversion rates and percentages of cytosine methylation for each DNA-sample analyzed by whole genome bisulfite sequencing (WGBS). (<em>processed data</em>).</p> <p><strong>Additional file 3</strong>. CSV-file with the total list of GO terms that were enriched in DMRs. DMRs were identified between groups by grouping the WGBS data from 16 individual Lombardy poplar ramets by their corresponding parent-of-origin (ortet ‘HUN4’ located in Hungary, ‘ITS3’ in Italy, ‘SPC1’ in Spain and ‘UKD2’ in the UK, respectively) (<em>processed data</em>).</p> <p><strong>Additional file 4. </strong>POWERPOINT-file. Heatmaps with GO terms over-represented in promoters containing DMRs in CpG-context per between-group pairwise comparison. DMRs were identified between groups by grouping the WGBS data from 16 individual Lombardy poplar ramets by their corresponding parent-of-origin (ortet ‘HUN4’ located in Hungary, ‘ITS3’ in Italy, ‘SPC1’ in Spain and ‘UKD2’ in the UK, respectively). A. HUN4 versus ITS3; B. HUN4 versus UKD2, C; ITS3 versus SPC1; D. HUN4 versus SCP1, E. SPC1 versus UKD2</p> <p><strong>Additional file 5. </strong>CSV-file with the raw data of the bud set observations in the common garden experiment (<em>raw data</em>).</p> <p><strong>Additional file 6. </strong>HTML-file with the R source codes to reproduce the results of the bud set analysis (<em>code,</em> <em>R script</em>).</p> <p><strong>Additional file 7. </strong>A text-file representing the Snakefile (i.e. a readable Python-based workflow) including the different steps and rules of the bioinformatics of the WGBS data analyses (<em>code, Snakefile</em>).</p> <p><strong>Additional file 8. </strong>RMD-file<strong> </strong>with the code to reproduce the analyses to identify differential methylated predefined regions (<em>code,</em> <em>R script</em>).</p> <p><strong>Additional file 9. </strong>R-script with the code to reproduce the clustering and visualizing of the GO enrichment results (<em>code,</em> <em>R script</em>).</p> <p><strong>Supporting files 1</strong>. Zip-folder with: i) excel-files listing the genes in DMRs, and ii) PNG-files with the ‘Biological Coefficient of Variation (BCV)’-plots between any of the six pairwise comparisons of Lombardy poplars grouped per ortet and identified with Bioconductor package edgeR. DMRs were identified between groups by grouping the WGBS data from 16 individual Lombardy poplar ramets by their corresponding parent-of-origin (‘HUN4’ located in Hungary, ‘ITS3’ in Italy, ‘SPC1’ in Spain and ‘UKD2’ in the UK, respectively) (<em>processed data</em>).</p> <p><strong>Supporting files 2</strong>. Zip-folder with PNG-files representing heatmaps and excel-files with clustered GO terms significant over-represented in promoters and gene regions located in DMRs. DMRs were identified between groups by grouping the WGBS data from 16 individual Lombardy poplar ramets by their corresponding parent-of-origin (ortet ‘HUN4’ located in Hungary, ‘ITS3’ in Italy, ‘SPC1’ in Spain and ‘UKD2’ in the UK, respectively. The files were obtained with the Bioconductor package simplifyEnrichment (<em>processed data</em>).</p> <p>---------------------------------------------------------</p> <p>Version 3:</p> <ul> <li>Renaming of file names according to the publisher's guidelines</li> <li>Additional file 2 includes also bisulfite conversion rates per sample</li> </ul>
'Twitter Is Dead, Long Live X!' A Decade of Microblog Research and Implications for Knowledge and Research
<p>Talk at the <a href="https://www.digital-philosophy.org/" target="_blank" rel="noopener">Philosophy [in:of:for:and] Digital Knowledge Infrastructures</a> online workshop 2023 (28/09/2023).</p>
Videos for: Greening the dike revetment with historic sod transplantation technique in a Living Lab
<p>Videos belonging to the publication: <br>Van den Hoven et al., Greening the dike revetment with historic sod transplantation technique in a Living Lab. <br>In: Journal of Flood Risk Management. <br>DOI:10.1111/jfr3.12968</p> <p>Video 1 Sods transplantation<br>Video 2 Impression of sod pulling method<br>Video 3 Impression of wave impact simulation<br>Video 4 Impression of overflow simulation</p>
Weak effect of urbanisation on bdelloid rotifers living in lichens
<p>Human activities have an overwhelming impact on the natural environment, leading to a deep biodiversity crisis whose effects range from genes to ecosystems. We here analysed the effect of such anthropogenic impacts on bdelloid rotifers (Rotifera: Bdelloidea), for whom these effects are poorly understood. We targeted bdelloid rotifers living in lichen patches across urbanisation gradients in Flanders and Brussels (Belgium). Urbanisation was measured as the percentage of built-up area across different spatial scales, at circles from 50 m to 3,200 m of radius around the lichen. Urbanisation effects on biodiversity were assessed on abundance, species richness, and community-weighted mean body size of bdelloid rotifers, as well as on genetic diversity of one of the most common and widespread bdelloid species, <em>Adineta</em> <em>vaga</em>. Overall, no negative effect of urbanisation was found at any diversity level and at any spatial scale. Counterintuitively, built-up area quantified at the largest spatial scale had a positive effect on abundance. These results leave open the question of whether negative effects of urbanisation are present for bdelloid rotifers, or if such effects are only visible at even larger spatial scales.</p>
Raw data for publication: Bioinspired Living Coating System for Wood Protection: Exploring Fungal Species on Wood Surfaces Coated with Biofinish during its Service Life
<p>Weather Data.xlsx</p> <p>This file contains hourly local weather conditions in Izola, Slovenia from October 2021- August 2022</p> <p>Number of colonies.xlsx</p> <p>This file contains the number of fungal colonies isolated from the InnoRenew CoE facade</p> <p>FUNGAL STRAINS_DNA sequence analysis.xlsx</p> <p>This file contains the Genomic DNA of the fungal strains detected on the InnoRenew CoE facade</p>
Fig. 2 in Living Together in the Plankton: A Survey of Marine Protist Symbioses
Fig. 2. Transmission electron microscopic ultrathin section images of symbionts in some open ocean protists. a – free-living open ocean amoeba with two kinds of intracytoplasmic bacteroids (arrows): round to oval within double membranes, and curved dense rod within a single-membrane vacuole; b – dinoflagellate symbionts as found in planktonic foraminiferans and radiolarians; c – putative prymnesiid symbiont from a radiolarian; d – prasinomonad symbiont from a large spongiose skeletal radiolarian. Figs. b–d: N – nucleus, V – vacuole, arrows – light absorbing plastids (adapted from Anderson 1983). All scale bars: 2 µm.
Fig. 1 in Living Together in the Plankton: A Survey of Marine Protist Symbioses
Fig. 1. Light microscopic images of living symbiont-bearing open ocean protists. a – radiolarian showing the central capsule (Cp) containing the nucleus and surrounding cytoplasm, and external to it, long-tapered, radiating pseudopodia known as axopodia (Ax) appearing as a bright halo, including numerous golden-hued algal symbionts on the axopodia (arrows). Scale bar: 500 µm; b – planktonic foraminiferan bearing a calcitic shell (Sh) and peripherally radiating calcite spines that are covered by pseudopodial cytoplasm bearing scattered algal symbionts (arrows). The small greenish, rounded shell chamber contains dense clusters of symbionts within the intrashell cytoplasm. Scale bar: 100 µm; c – composite image of a portion of a colonial radiolarian with numerous central capsules containing dinoflagellate symbionts (arrows) in the peripheral cytoplasm of the central capsules. The entire colony is enclosed within a optically clear spherical gelatinous sheath. This portion of the colony is illuminated from the lower right-hand side. Scale bar: 500 µm; d – the dinoflagellate Noctiluca scintillans (green form) with numerous living prasinomonad algal symbionts (Pedimonas noctilucae), appearing as clumps of green particles, scattered throughout the cytoplasm. Scale bar: 200 µm.
Figs 16–21 in Redescription of Strombidium coronatum (Leegaard, 1915) Kahl, 1932 (Ciliophora, Spirotricha) based on live observation, protargol impregnation, and scanning electron microscopy
Figs 16–21. Strombidium coronatum, Irish Sea specimens (16–18, scanning electron micrographs; 19–21, protargol impregnation, micrographs of several focal planes were stacked, using the computer program CombineZP from Alan Hadley). 16 – ventrolateral view; 17 – left lateral view showing uniquely shaped peristome, which is roughly triangular in outline and almost flat, extending in the sagittal plane. The extrusomes insert in short oblique rows anteriorly to the girdle kinety; note that some of them are just ejected (arrowhead); 18 – posterior cell portion showing the sharp, longitudinal ridges that have already been illustrated in the original description by Leegaard (1915); 19 – left lateral view of an early divider; 20 – dorsolateral view of an early divider; 21 – ventrolateral view. AP – apical protrusion, BM – buccal membranelles, CM – collar membranelles, DC – distended cell surface, EX – extrusome attachment sites, GK – girdle kinety, MA – macronucleus, OP – oral primordium, VK – ventral kinety. Scale bars: 40 µm (16), 20 µm (17, 19–21), and 10 µm (18).
Fig. 13. A–B. Neocranaus albiconspersus Roewer, 1913, live specimens from Huila. A. Male. B. Female. C–D in Peering beyond the monotypic veil: taxonomy and notes on the parental care of Neocranaus (Opiliones: Gonyleptoidea: Cranaidae)
Fig. 13. A–B. Neocranaus albiconspersus Roewer, 1913, live specimens from Huila. A. Male. B. Female. C–D. Neocranaus pectinitibialis (Roewer, 1915) comb. nov., live specimens from Tolima. C. Male. D. Female. Pictures: A–B: Julio César González-Gómez; C–D: Luis F. García.
Data from: Carry-over effect of leguminous winter cover crops and living mulches on winter wheat as a second main crop following white cabbage
<p><strong>Background: </strong>In trials on two strategies for the integration of legumes in a vegetable crop rotation (leguminous winter cover crops and living mulches), data were collected on the two subsequent crops white cabbage and winter wheat. The data on biomass and soil mineral nitrogen content are made publicly available here. </p> <p> </p> <p><strong>Abstract:</strong> <span>The direct effect of winter cover crops (WCC) or living mulches (LM) on a first vegetable crop has already been investigated. However, little is known about the effect on growth and yield of a second cash crop. </span><span>The aim of the study was to assess the carry-over effect of legumes grown as WCC or LM on winter wheat as a second crop after cabbage measured in yield and nitrogen release.</span><span> Two field trials were carried out in Germany between 2019 and 2022. In the WCC trial rye, rye with vetch, vetch, pea and faba bean were used as WCC and compared to bare soil. The WCC biomass was incorporated before cabbage planting in late spring. For the LM trial, perennial ryegrass or white clover were used as LM during cabbage cultivation and compared to bare soil. The LM biomass was incorporated together with the cabbage residues (STU/STT) and compared to an early incorporation of LM biomass before cabbage planting (RT). Winter wheat in both trials was seeded as the second main crop in the rotation in the fall.</span></p>
Experimental package for "Live Software Documentation of Design Pattern Instances"
Experimental package containing the materials and data for an empirical study conducted with the DesignPatterDoc plugin for IntelliJ IDEA.
Figure 10. Living and fossil limopsids. A, B in Paleogene marine bivalves of the deep-water Keasey Formation in Oregon, Part II: The pteriomorphs
Figure 10. Living and fossil limopsids. A, B. Exterior and interior of left valve, Limopsis panamensis Dall (1902), SBMNH 474078, scale bar=1 cm. C, E. Limopsis squiresi n. sp., Keasey Formation holotype, UCMP 110728. C. Left valve shell interior and resilifer preserved dorsally in matrix, with remnant periostracum and exterior shell of right valve preserved ventrally. E. Fragment of right valve exterior outlined in yellow on C, removed and inverted. Scale bar=5 mm. (D). Limopsis marysvillensis (Dickerson, 1913), Capay formation holotype, UCMP 11766.
Data from: Deep-living and diverse Antarctic seaweeds are potentially important contributors to global carbon fixation
<p>Global models predict that Antarctica has little suitable habitat for macroalgae and that Antarctic macroalgae therefore make a negligible contribution to global carbon fixation. However, coastal surveys are rare at southern polar latitudes (beyond 71° S), and here we report diverse and abundant macroalgal assemblages in un-navigated coastal habitats of the Ross Sea from 71.5˚ – 74.5˚ S. We found extensive macroalgal assemblages living at depths >70 m and specimens of crustose coralline algae as deep as 125 m. Using global light modelling and published photosynthetic rates we estimate that Antarctic macroalgae may contribute between 0.9 – 2.8 % of global macroalgal carbon fixation. Combined, this suggests that Antarctic macroalgae may be a greater contributor to global carbon fixation and possibly sequestration than previously thought. The vulnerability of these coastal environments to climate change, especially shifting sea ice extent and persistence, could influence Southern Ocean carbon fixation and rates of long-term sequestration.</p>
Data Sets "Proteinoids--Polyaniline Interaction with Stimulated Neurons on Living and Plastic Surfaces"
<p>Data sets for the paper Proteinoids--Polyaniline Interaction with Stimulated Neurons on Living and Plastic Surfaces.</p>
Spontaneous fission half-lives of actinides and superheavy elements
<p>The uploaded files contain data colected during the studies of the super-heavy elements within the micro-micro model LSD. The results of the studies were published in the paper : J. Marin Blanco, A. Dobrowolski, A. Zdeb, and J. Bartel, Phys. Rev. C <strong>108</strong>, 044618 – Published 30 October 2023. Addidtionaly, there is uploaded the pdf file of the publication. The results are related to the project No. 2021/43/P/ST2/03036 co-funded by theNational Science Centre and the European Union FrameworkProgramme for Research and Innovation Horizon 2020 under the Marie Skłodowska-Curie grant agreement no. 945339.</p> <p> </p>
Fig. 3 in Free-living Heterotrophic Flagellates Lakes in Turkey (Protista) from Two Hypersaline
Fig. 3. (a) Ancyromonas sigmoides, (b) Caecitellus parvulus, (c) Cafeteria roenbergensis, (d) Cantina marsupialis, (e) Chelonemonas sp., (f) Codosiga botrytis, (g) Carpediemonas membranifera, (h) Neobodo curvifilus, (i) Neobodo designis, (j) Neobodo saliens, (k) unidentified protist, (l)-(m) Pleurostomum flabellatum, (n) Rhyncomonas nasuta, (o) Monosiga brevicollis, (p) Salpingoeca marina, (q) Pendulomonas adriperis, (r) Halocafeteria seosinensis. All micrographs are DIC images. Scale bar in (k) represents for all figures.
Fig. 2 in Free-living Heterotrophic Flagellates Lakes in Turkey (Protista) from Two Hypersaline
Fig. 2. (a) Ancyromonas sigmoides, (b) Neobodo curvifilus, (c) Chelonemonas sp., (d) Carpediemonas membranifera, (e) Caecitellus parvulus, (f) Codosiga botrytis, (g) Cafeteria roenbergensis, (h) Pleurostomum flabellatum, (i) Rhynchomonas nasuta, (j) Salpingoeca marina, (k) Pendulomonas adriperis, (l) Neobodo saliens, (m) unidentified protist, (n) Neobodo designis, (o) Monosiga brevicollis, (p) Halocafeteria seosinensis, (q) Cantina marsupialis.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.