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FIG. 5 in Systematics of Neotropical Spiny Mice, Genus Neacomys Thomas, 1900 (Rodentia: Cricetidae), from Southeastern Amazonia, with Descriptions of Three New Species
FIG. 5. Collection localities of specimens of the Dubosti Group of Neacomys examined in the present study. Numbers are keyed to entries in our gazetteer (appendix 1).
FIG. 2 A–C in Systematics of Neotropical Spiny Mice, Genus Neacomys Thomas, 1900 (Rodentia: Cricetidae), from Southeastern Amazonia, with Descriptions of Three New Species
FIG. 2 A–C (above and following two pages). Bayesian phylogeny of Neacomys based on cytochrome b sequence data. Numbers represent Bayesian posterior probabilities (above) and ML bootstrap support (below) at nodes recovered by both analyses (bootstrap support for nodes only recovered by our ML analysis are shown in appendix 2). Only ML bootstrap support>50% is shown. Branch tips are labeled with geographic identifiers and voucher codes listed in table 1. Specimens marked with asterisks (*) indicate holotypes.
FIG. 1 in Systematics of Neotropical Spiny Mice, Genus Neacomys Thomas, 1900 (Rodentia: Cricetidae), from Southeastern Amazonia, with Descriptions of Three New Species
FIG. 1. SEM images of molar toothwear age classes of Neacomys amoenus used in this study (based on Voss, 1991). From left to right: age class 1 (UFMT 4050), age class 2 (UFMT 1758), age class 3 (UFMT 1760), age class 4 (UFMT 1759), and age class 5 (UFMT 915). Arrows indicate the incompletely erupted M3 in age class 1, the distinct M2 anteroloph (not fused with the paracone) in age class 3, and the obliterated M2 anteroloph (fused with the paracone) in age class 4.
Data_Figure S4_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p> </p> <p>Data of Figure S4 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice.</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS4.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as a file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_M_1.txt) in txt format, a file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_3.pdf) PDF format.</p>
Data_Table 1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p> </p> <p>Data of Table1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice”</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Tab1.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as one file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_3.pdf) PDF format.</p>
Data_Table 3_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Table 3 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Tab3.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as two files in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_M_1.txt) in txt format, two files containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_2.csv), and two files containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_3.pdf) PDF format.</p>
Data_Table 2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Table 2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Tab2.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as one file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_3.pdf) PDF format.</p>
Data_Figure 2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Figure 2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Fig2.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as two files in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_M_1.txt) in txt format, two files containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_2.csv), and two files containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_3.pdf) PDF format.</p> <p> </p>
Data_Figure 3_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Figure 3 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Fig3.PNG). Corresponding raw data and subsequent data analysis provided as eight files in CSV format (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_1-3.csv and 31003A_179400_10.3390_metabo11070442_MW_AE-BileAcids_2_3_1-5.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_MW_FJ_AE-BileAcids_2-3_M_1.txt) in txt format, four files containing further related information in PDF format ( 31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_4-6.pdf and 31003A_179400_10.3390_metabo11070442_MW_AE-BileAcids_2_3_6.pdf).</p>
Data_Figure 4_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Figure 4 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Fig4.PNG). Corresponding raw data and subsequent data analysis provided as four files in CSV format (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_1-3.csv and 31003A_179400_10.3390_metabo11070442_MW_AE-BileAcids_2_3_2.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_MW_FJ_AE-BileAcids_2-3_M_1.txt) in txt format, five files containing further related information in PDF format ( 31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_4-7.pdf and 31003A_179400_10.3390_metabo11070442_MW_AE-BileAcids_2_3_1.pdf).</p> <p> </p>
Data_Figure 5_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Figure 5 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Fig5.PNG) and one meta-data-file (31003A_179400_10.3390_metabo11070442_AE-BileAcids_M_1.txt) in txt format</p>
Data_Figure 1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Figure 1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice.</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Fig1.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as two files in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_M_1.txt) in txt format, two files containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_2.csv), and two files containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_3.pdf) PDF format.</p>
Data_Figure S2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Figure S2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice.</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS2.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as two files in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_3.pdf) PDF format.</p>
Data_Figure S1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p> </p> <p>Data of Figure S1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice.</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS1.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as one file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_3.pdf) PDF format.</p>
Data_Figure S3_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Figure S3 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice.</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS3.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as a file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, a file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.csv), and a file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.pdf) PDF format.</p>
Data_Table S1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Table S1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice.</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_TabS1.PNG). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_M_1.txt) in txt format and two files containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_1.pdf) PDF format.</p>
Data_Figure S5_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Figure S5 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice.</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS5.PNG). Corresponding raw data and subsequent data analysis obtained from mRNA analysis provided as a file in PDF format (31003A_179400_10.3390_metabo11070442_FJ_AE-bileAcids_1-7.pdf). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_M_1.txt) in txt format, a file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_ FJ_AE-BileAcids_3_4_7-10.csv).</p>
Data_Table S2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice
<p>Data of Table S2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice.</p> <p>The Dataset (doi: 10.3390_metabo11070442) contains the original Table as PNG-format (10.3390_metabo11070442_TabS2.PNG). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_M_1.txt) in txt format.</p>
Longitudinal structural MRI and behavioural data for mice prenatally exposed to maternal immune activation either early or late in gestation
<p>Prenatal maternal immune activation (MIA) is a risk factor for neurodevelopmental disorders. How the gestational timing of MIA-exposure differentially impacts downstream development remains unclear. The data presented here includes longitudinal structural magnetic resonance imaging (MRI) data from weaning to adulthood, and behavioural testing in adolescence and adulthood on C57BL/6 mice exposed to MIA induced by the viral mimetic, polyinosinic:polycytidylic acid (poly I:C) either early (gestational day [GD]9) or late (GD17) in gestation. </p> <p>The data published here was collected and analyzed for the following publication, where more details can be found (Guma et al., 2021 https://doi.org/10.1016/j.biopsych.2021.03.017). Briefly, we found that early MIA-exposure was associated with accelerated brain volume increases in adolescence/early-adulthood that normalized in later adulthood, in regions including the striatum, hippocampus, and cingulate cortex. Similarly, alterations in anxiety-like, stereotypic, and sensorimotor gating behaviours observed in adolescence normalized in adulthood. In contrast, MIA-exposure in late gestation had less impact on anatomical and behavioural profiles. </p> <p>In addition to the univariate analyses described above, we also undertook a multivariate analysis (partial least squares) to relate imaging and behavioural variables for the time of greatest alteration, i.e. adolescence/early adulthood. We further explored the molecular underpinnings of region-specific alterations in early MIA-exposed mice in adolescence using RNA sequencing (data for differentially expressed genes in the anterior cingulate cortex, dorsal hippocampus, and ventral hippocampus are available via the original publication https://doi.org/10.1016/j.biopsych.2021.03.017 for a separate cohort of adolescent mice prenatally exposed to MIA or vehicle at GD9). </p> <p>In this dataset, you will find a total of <strong>376 preprocessed structural MRIs</strong> (in MINC format) acquired at postnatal day ~21, ~38, ~60, and ~90 in mice exposed to poly I:C or vehicle control (0.9% sterile saline) at GD9 or 17. These are T1-weighted, manganese enhanced (50mg/kg 24 hours pre-scan), structural images at 100 micron isotropic resolution acquired on a 7 Tesla Bruker Biospec 70/30; matrix size of 180 x 160 x 90; 14.5 minutes, 2 averages, using 5% isoflurane for induction, 1.5% for maintenance of anesthesia during the scan. T1-weighted scans were preprocessed by stripping native coordinates, flipping left-right to maintain fidelity, denoising, correcting inhomogeneities in the bias field using the N4 algorithm, and registering in LSQ6 alignment (i.e. 6 degrees of freedom are allowed for imagine alignment: translations and rotations along x, y, and z dimensions). The demographics information for each animal is included in the <strong>demographics.csv</strong> file. </p> <p>Behavioural tests were performed following the postnatal day 38 and 90 scans in all animals with a 2 day rest period. These include: open field test, marble burying test, three chambered social approach, and prepulse inhibition. The attentional set shifting task was also performed following the final behavioural test in the postnatal day 90 wave of behaviours. The data for all of these tests is presented in its own individual .csv spreadsheet and includes data for both the timepoints evaluated.</p> <p>Included in this data set are the structural MRIs in MINC format, the behavioural .csv data, and a <strong>readme.txt</strong> file providing further detail on the data structure and content, and on how to interpret the data column titles. DICOMS are also available for the structural MRI data, as are the raw (not-preprocessed) MINC files, available upon request to the authors. </p> <p>Finally, the authors would like to acknowledge the funding bodies that supported the completion of this work including the Canadian Institute for Health Research, the Fonds de Recherche du Québec en Santé, and the Healthy Brains for Healthy Lives at McGill University.</p>
FIG. 14 in Archboldomys (Muridae: Murinae) Reconsidered: A New Genus and Three New Species of Shrew Mice from Luzon Island, Philippines
FIG. 14. Occlusal view of maxillary and mandibular molar toothrows of A–B, Archboldomys maximus (FMNH 193531, holotype), C–D, Soricomys leonardocoi (FMNH 190972, holotype), and E–F, Soricomys montanus (FMNH 188314, holotype).
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.