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406 results for “micro-CT”
Confocal and micro-CT data of Basinosa pengweii, holotype, NIGP173119
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Basinosa pengweii</em> (NIGP173910) from mid-Cretaceous Burmese amber.</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 16.919 μm; power, 5 W; acceleration voltage, 60 kV; exposure time, 2 s; projections, 2001. The TIFF stack is provided.</p>
Confocal and micro-CT data of Mesonosa scandens, holotype, NIGP173928
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Mesonosa scandens</em> (NIGP173928) from mid-Cretaceous Burmese amber.</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 6.7745 μm; power, 4 W; acceleration voltage, 50 kV; exposure time, 2 s; projections, 2501. The TIFF stack is provided.</p>
Confocal and micro-CT data of Archaenosodendron spp.
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices for holotypes of <em>Archaenosodendron cretaceum</em> (CNU-COL-MA-0321), <em>Archaenosodendron explanatum</em> (NIGP177613), <em>Archaenosodendron remotidens </em>(NIGP177614) and <em>Archaenosodendron angulare</em> (NIGP177615), and X-ray microtomography (micro-CT) slices for the holotype of <em>Archaenosodendron explanatum</em>. This dataset is associated with the publication "On the Nosodendridae from mid-Cretaceous amber of northern Myanmar (Coleoptera: Nosodendroidea)" (DOI:10.11646/zootaxa.5082.3.2).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 4.4634 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 4 s; projections, 2501. The TIFF stack is provided.</p>
A micro-CT of a human skull
<p>This is a micro-CT data set of a human skull - including raw data, a 3D reconstruction and a bone segmentation. See "README.pdf" for a detailed description.</p>
Confocal and micro-CT data of Nothotytthonyx serratus, holotype, NIGP179427
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Nothotytthonyx serratus</em> (NIGP179427) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "<em>Nothotytthonyx</em>, a new genus of Malthininae (Coleoptera: Cantharidae) from mid-Cretaceous amber of northern Myanmar" (DOI:10.3897/zookeys.1092.81701).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) or 561 nm (DPSS 561-10) laser excitation lines. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 6.1511 μm; power, 4 W; acceleration voltage, 50 kV; exposure time, 1.5 s; projections, 2401. The TIFF stack is provided.</p>
Micro-CT abdominal reconstruction of a worker honeybee abdomen
<p><strong>Micro-CT abdominal reconstruction of worker honeybees.</strong><em> </em></p> <p>The samples were obtained from a honeybee colony located in Cortijo Tinajas (Lecrín, Granada, Spain; coordinates: 36°55'25.1"N 3°31'42.9"W; 36.923645,-3.528575) and kindly provided by Apinevada S. L. Micro-CT scans were carried out at the Centro de Instrumentación Científica (University of Granada, Granada, UGR), using a Xradia 510 VERSA (ZEISS) (Xradia 510 VERSA (ZEISS). The following settings were established to get the same resolution of all samples: 4X magnification, 6.1515 μm pixel size, 200.021 mm mm source-sample distance, 20 mm detector-sample distance, and 2034 images.</p>
Confocal and micro-CT data of Rhomeocalpsua torosa, holotype, NIGP180054
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Rhomeocalpsua torosa</em> (NIGP180054) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "<em>Rhomeocalpsua torosa</em> gen. et sp. nov., a unique lineage of Endomychidae from mid‑Cretaceous Burmese amber (Coleoptera: Coccinelloidea)" (DOI:10.11646/palaeoentomology.5.2.7).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) or 566 nm (DPSS 561-10) laser excitation lines. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 1.9324 μm; power, 4 W; acceleration voltage, 50 kV; exposure time, 1.5 s; projections, 3001. The TIFF stack is provided.</p>
Confocal and micro-CT data of Cretakarenni shaoi, holotype, NIGP177331
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Cretakarenni shaoi</em> (NIGP177331) from mid-Cretaceous Burmese amber. Additional confocal data for <em>Cretakarenni birmanicus</em> (QUST-INSECT-0003) are also provided. This dataset is associated with the publication "Minute clubbed beetles with cephalic horns in mid-Cretaceous amber from northern Myanmar (Coleoptera: Monotomidae)" (DOI:10.11865/zs.2022206).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 2.0815 μm; power, 4 W; acceleration voltage, 50 kV; exposure time, 3 s; projections, 2801. The TIFF stack is provided.</p>
Video 2. Whole honeybee abdomen Micro-CT
<p>Videos of the whole bee abdomen using a collection of<strong> </strong> 2D images for 3D stacking. Micro-CT scans were carried out at the Centro de Instrumentación Científica (University of Granada, Granada, UGR), using a Xradia 510 VERSA (ZEISS) (Xradia 510 VERSA (ZEISS). The following settings were established to get the same resolution of all samples: 4X magnification, 6.1515 μm voxel size, 200.021 mm mm source-sample distance, 20 mm detector-sample distance, BIN 1 (2048x2048 pixels on CCD), and 2034 projections for whole bee abdomen. Voltage, current, filter and exposure time were adjusted according to features of the samples as follows: bee whole abdomen: 60 kV accelerating voltage (a.v.), 83 μA beam current (b.c.), 40 s exposure time (e.t.) and LE2 source filter (s.f.).</p>
Seeds in box micro-CT dataset
<p>Nikon XTH225 micro-CT dataset of sunflower seeds in an acrylic box.</p> <p>1572 projections size 1000x1000 pixels in TIFF-format, over 0-360 degrees both included, cone-beam geometry.</p> <p>Scan geometry meta data in .xtekct file. Rotation axis has a small tilt, see information from dual-slice centering in parameters CentreOfRotationTop and CentreOfRotationBottom in the file "47209 testscan korn01_recon.xtekct".</p> <p>Only raw projections provided, no reconstruction based on vendor software.</p>
Confocal and micro-CT data of Xenostanus jiangkuni, holotype, NIGP177782
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Xenostanus</em><strong> </strong><em>jiangkuni</em> (NIGP177782) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "Earliest fossil record of Corylophidae from Burmese amber and the phylogeny of Corylophidae (Coleoptera: Coccinelloidea)" (DOI:10.3897/asp.80.e81736).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 1.6106 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 1.5 s; projections, 3001. The TIFF stack is provided.</p>
Confocal and micro-CT data of Varcalium lawrencei, holotype, NIGP177336
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Varcalium lawrencei</em> (NIGP177336) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "A new marsh beetle from mid-Cretaceous amber of northern Myanmar (Coleoptera: Scirtidae)" (DOI:10.1038/s41598-022-16822-y).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 16.916 μm; power, 4 W; acceleration voltage, 50 kV; exposure time, 2 s; projections, 2001. The TIFF stack is provided.</p>
Confocal and micro-CT data of Nothattagenus burmiticus, holotype, NIGP164890
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Nothattagenus burmiticus</em> (NIGP164890) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "'<em>Attagenus</em>' <em>burmiticus</em> from mid-Cretaceous amber reinterpreted as a member of Orphilinae (Coleoptera: Dermestidae)" (DOI:10.11646/palaeoentomology.5.4.12).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 2.7017 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 2.5 s; projections, 2501. The TIFF stack is provided.</p>
Confocal and micro-CT data of Angucharcotes thayerae, holotype, NIGP180055
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Angucharcotes thayerae</em> (NIGP180055) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "Earliest fossil record of Phloeocharinae in mid-Cretaceous amber from northern Myanmar (Coleoptera: Staphylinidae)" (DOI:10.1016/j.cretres.2022.105371).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 1.4777 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 5 s; projections, 2801. The TIFF stack is provided.</p>
A novel technique to simulate and characterize a yarn's mechanical behavior based on a geometrical fiber model extracted from micro-CT imaging: geometry and simulation data
<p>This dataset contains the original µCT scan data, the scripts and intermediate results for the generation of the geometrical fiber model, as well as the structural simulation files and their experimental validation data described in the paper <a href="https://journals.sagepub.com/doi/10.1177/00405175221137009">"A novel technique to simulate and characterize a yarn's mechanical behavior based on a geometrical fiber model extracted from micro-CT imaging"</a>, published in Textile Research Journal.</p>
Confocal and micro-CT data of Yassibum yoshitomii, holotype, NIGP200730
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Yassibum yoshitomii</em> (NIGP200730) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "An unusual Cretaceous beetle with affinity to Anamorphidae (Coleoptera: Coccinelloidea)" (DOI: 10.7717/peerj.18008).</p> <p>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 561 nm (DPSS 561-10) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</p> <p>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 1.6339 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 4 s; projections, 3001. The TIFF stack is provided.</p>
Confocal and micro-CT data of Vicelva rasilis, holotype, NIGP166145
<div>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Vicelva rasilis</em> (NIGP166145) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "A new fossil species of the extant genus <em>Vicelva</em> from mid-Cretaceous Kachin amber (Coleoptera: Staphylinidae)" (DOI:10.1002/ece3.11487).</div> <div> </div> <div>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) or 561 nm (DPSS 561-10) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</div> <div> </div> <div>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 6.8202 μm; power, 4 W; acceleration voltage, 50 kV; exposure time, 1.5 s; projections, 2401. The TIFF stack is provided.</div>
Confocal and micro-CT data of Foveapeltis rutai
<div>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the type specimens of <em>Foveapeltis rutai</em> (holotype, NIGP203568, paratypes, IZGAS-BA-COL001 and IZGAS-BA-COL003) from mid-Cretaceous Kachin amber. This dataset is associated with the publication "<em>Foveapeltis</em> gen. nov., an unusual cleroid genus with large hypomeral cavities from mid-Cretaceous amber (Coleoptera: Cleroidea)" (DOI:10.1002/ece3.11589).</div> <div> </div> <div>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. Both original CZI files and exported TIFF stacks are provided.</div> <div> </div> <div>Micro-CT data for NIGP203568 were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 1.7815 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 4 s; projections, 3001. The TIFF stacks are provided.</div>
Confocal and micro-CT data of Eucinetus spp. from Kachin amber
<div>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotypes of <em>Eucinetus debilispinus</em> (NIGP203939), <em>Eucinetus panghongae</em> (NIGP203940) and <em>Eucinetus zhenhuai</em> (NIGP203941). This dataset is associated with the publication "Three new species of the extant genus <em>Eucinetus</em> from mid-Cretaceous amber of northern Myanmar (Coleoptera: Eucinetidae)" (DOI:10.11646/zootaxa.5492.2.4).</div> <div> </div> <div>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm Argon laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.</div> <div> </div> <div>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: NIGP203939 [isotropic voxel size, 2.2345 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 2 s; projections, 1401]; NIGP203940 [isotropic voxel size, 2.9369 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 4 s; projections, 2601]; NIGP203941 [isotropic voxel size, 3.5820 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 2 s; projections, 2501]. The TIFF stacks are provided.</div>
Confocal and micro-CT data of Domipteron gaoi, holotype, NIGP205048
<p>This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of <em>Domipteron gaoi</em> (NIGP205048) from Miocene Dominican amber. This dataset is associated with the publication "<em>Domipteron</em>, a new genus of Calopterini from Miocene Dominican amber (Coleoptera: Elateroidea: Lycidae)" (DOI:10.1017/jpa.2024.72).<br> <br>Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 561 nm (DPSS 561-10) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.<br> <br>Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 10.412 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 3.5 s; projections, 2001. The TIFF stack is provided.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.