Find research datasets worth reusing
Search datasets from major research repositories and use ShareScore to quickly assess how well each record supports discovery, access, and reuse.
212
datasets available to search
ShareScore release 0.7.1
Dataset results
212 results for “parallel evolution”
Supplementary material 5 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Table S5
Supplementary material 4 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Table S4
Supplementary material 3 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Table S3
Figure 3 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 3 Bayesian inference tree of the Microhyla–Glyphoglossus assemblage derived from the combined mtDNA + nuDNA analysis of 3207 bp of alignment including 12S rRNA, tRNAVal, 16S rRNA and BDNF gene fragments. Black circles correspond to well-supported (PP ≥ 0.95; BS ≥ 90) and white circles to moderately supported (0.95 > PP ≥ 0.90; 90 > BS ≥ 75) nodes; no circles indicate unsupported nodes. Letters A–I denote the species groups of Gorin et al. (2020). For voucher specimen information and GenBank accession numbers see Suppl. material 1: Table S1. Yellow, red, and blue color denotes Microhyla I, Microhyla II, and Glyphoglossus, respectively. Numbers at tree nodes correspond to PP/BS support values, respectively (shown only for moderately supported nodes). For full version of this tree showing the outgroups and node support values see Suppl. material 6: Figure S1.
Figure 7 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 7 Hand skeleton composition in the Microhyla–Glyphoglossus assemblage representatives. The hands are shown in ventral view for Glyphoglossus molossus (A), Glyphoglossus yunnanensis (B), Microhyla achatina (C), Microhyla nepenthicola (D) and Nanohyla arboricola (E). Note: figures display only calcified structures; cartilages are omitted due to limitations of micro-CT scanning. Scale bar equals 1 mm.
Figure 8 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 8 Continuous ancestral state reconstruction of male body size (left) and sexual size dimorphism (right) in the Microhyla–Glyphoglossus assemblage. Species names in purple have at least one sex with maximum SVL ≤ 20 mm, in fuchsia at least one sex with maximum SVL ≤ 16 mm. Circles at nodes are based on inferred ancestral male SVL.
Figure 12 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 12 Holotype of Microhyla maculifera Inger, 1989 (FMNH 231271, adult male) in dorsal (A) and ventral (B) aspects. Scale bar denotes 5 mm. Field Museum of Natural History. FMNH 231271. Created by Field Museum of Natural History, Amphibian and Reptile Collection and licensed under CC-BY-SA 4.0.
Figure 4 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 4 General osteology of the Microhyla–Glyphoglossus assemblage representatives. The full skeletons are shown for Glyphoglossus molossus (A – dorsal, B – ventral views), Glyphoglossus yunnanensis (C – dorsal, D – ventral views), Microhyla achatina (E – dorsal, F – ventral views), Microhyla nepenthicola (G – dorsal, H – ventral views), and Nanohyla arboricola (I – dorsal, J – ventral views). Note: figures display only calcified structures; cartilages are omitted due to limitations of micro-CT scanning. Scale bar equals 5 mm.
Supplementary material 2 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Table S2
Figure 6 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 6 Axial skeleton composition in the Microhyla–Glyphoglossus assemblage representatives. The vertebral columns are shown in dorsal view for Glyphoglossus molossus (A), Glyphoglossus yunnanensis (B), Microhyla achatina (C), Microhyla nepenthicola (D) and Nanohyla arboricola (E). Numerals (I–VIII) correspond to the numbers of presacral vertebrae (PSV); I+II denotes fusion of the two first PSV. Note: figures display only calcified structures; cartilages are omitted due to limitations of micro-CT scanning. Scale bar equals 3 mm.
Figure 11 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 11 Members of the new genus Nanohyla gen. nov. in life (males): N. annectens from Genting Highlands, Pahang, Malaysia (A), N. annamensis from Bidoup – Nui Ba N.P., Lam Dong, Vietnam (B), N. arboricola from Chu Yang Sin N.P., Dak Lak, Vietnam (C), N. hongiaoensis from Bidoup – Nui Ba N.P., Lam Dong, Vietnam (D), N. marmorata from Kon Chu Rang N.R., Gia Lai, Vietnam (E), N. nanapollexa from Kon Plong, Kon Tum, Vietnam (F), N. perparva from Gunung Mulu, Sarawak, Malaysia (G), N. petrigena from Gunung Mulu, Sarawak, Malaysia (H), and N. pulchella from Bidoup – Nui Ba N.P., Lam Dong, Vietnam (I). Insets show tympanic area of the each species; white arrow points at the tympanic rim of the external tympanum. Photos by Nikolay A. Poyarkov (A–С, D–F, I), Vu Dang Hoang Nguyen (D), and Indraneil Das (G, H).
Figure 2 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 2 Diversity of the Microhyla–Glyphoglossus assemblage based on an updated mtDNA-genealogy derived from the analysis of 2478 bp of alignment including 12S rRNA, tRNAVal, 16S rRNA gene fragments. Black circles correspond to well-supported (PP ≥ 0.95; BS ≥ 90) and white circles to moderately supported (0.95 > PP ≥ 0.90; 90 > BS ≥ 75) nodes; no circles indicate unsupported nodes. Letters A–I denote the species groups of Gorin et al. (2020). Photos by Nikolay A. Poyarkov, Indraneil Das, Vladislav A. Gorin, Parinya Pawangkhanant, Luan Thanh Nguyen, and Evgeniya N. Solovyeva. For full version of this tree showing the outgroups and node support values see Suppl. material 7: Figure S2.
Figure 10 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 10 Palmar views of hands (above) and thenar views of feet (below) of the representative Microhylas. str. and Nanohyla gen. nov. species: N. annamensis (A, B), N. arboricola (C, D), M. minuta (E, F), and M. tetrix (G, H). Arrow indicates outer metatarsal tubercle. Not to scale. Line drawings by Valentina D. Kretova.
Figure 9 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 9 Relationships between body size among sexes (A), and between male body size and sexual size dimorphism (B) in Microhylas. str., Nanohyla gen. nov., and Glyphoglossus. The line in (A) represents x=y.
Figure 1 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 1 Distribution ranges of the three clades of the Microhyla–Glyphoglossus assemblage. Distribution area of Microhyla I is shown in yellow, of Microhyla II in red, and of Glyphoglossus in blue. Distributional data from Gorin et al. (2020). Question mark denotes the unconfirmed record of "Microhyla annamensis" from Khao Sebab in eastern Thailand by Taylor (1962).
Figure 5 from: Gorin VA, Scherz MD, Korost DV, Poyarkov NA (2021) Consequences of parallel miniaturisation in Microhylinae (Anura, Microhylidae), with the description of a new genus of diminutive South East Asian frogs. Zoosystematics and Evolution 97(1): 21-54. https://doi.org/10.3897/zse.97.57968
Figure 5 Cranial osteology of the Microhyla–Glyphoglossus assemblage representatives. The skulls are shown in dorsal / ventral / lateral views for Glyphoglossus molossus (A / B / C, respectively), Glyphoglossus yunnanensis (D / E / F, respectively), Microhyla achatina (G / H / I, respectively), Microhyla nepenthicola (J / K / L, respectively), and Nanohyla arboricola (M / N / O, respectively). Note: figures display only calcified structures; cartilages are omitted due to limitations of micro-CT scanning. Scale bar equals 3 mm.
Data from: Ionome and elemental transport kinetics shaped by parallel evolution in threespine stickleback
Evidence that organisms evolve rapidly enough to alter ecological dynamics necessitates investigation of the reciprocal links between ecology and evolution. Data that link genotype to phenotype to ecology are needed to understand both the process and ecological consequences of rapid evolution. Here we quantified the suite of elements in individuals (i.e., ionome) and the fluxes of key nutrients across populations of threespine stickleback. We find that allelic variation associated with freshwater adaptation that controls bony plating is associated with changes in the ionome and nutrient recycling. More broadly, we find that adaptation of marine fish to freshwater conditions shifts the ionomes of natural populations and populations raised in common gardens. In both cases ionomic divergence between populations was primarily driven by differences in trace elements rather than elements typically associated with bone. These findings demonstrate the utility of ecological stoichiometry and the importance of ionome-wide data in understanding eco-evolutionary dynamics.
Data from: Evolutionary history and genetic parallelism affect correlated responses to evolution
We investigated the relationship between genomic and phenotypic evolution among replicate populations of Escherichia coli evolved for 1000 generations in four different environments. By re-sequencing evolved genomes, we identified parallel changes in genes encoding transcription regulators within and between environments. Depending on both the environment and the altered gene, genetic parallelism at the gene level involved mutations that either repeatedly affected identical codons or domains or were more widely distributed within the relevant genes. Evolved clones were characterized by parallel phenotypic changes in their respective evolution environments but also in the three alternative environments. Phenotypic parallelism for both traits was high for clones that evolved in the same environment, even in the absence of genetic parallelism. By contrast, clones that evolved in different environments revealed a higher parallelism in correlated responses when they shared mutated genes. Altogether, this work shows that after an environmental change or the colonization of a new habitat, similar ecological performances might be expected for individuals that shared mutated genes or experienced similar past selective pressures.
Data from: Genomics of parallel experimental evolution in Drosophila
What are the genomic foundations of adaptation in sexual populations? We address this question using fitness-character and whole-genome sequence data from 30 Drosophila laboratory populations. These 30 populations are part of a nearly forty-year laboratory radiation featuring three selection regimes, each shared by ten populations for up to 837 generations, with moderately large effective population sizes. Each of three sets of ten populations that shared a selection regime consist of five populations that have long been maintained under that selection regime, paired with five populations that had only recently been subjected to that selection regime. We find a high degree of evolutionary parallelism in fitness phenotypes when most-recent selection regimes are shared, as in previous studies from our laboratory. We also find genomic parallelism with respect to the frequencies of single-nucleotide polymorphisms, transposable elements, insertions, and structural variants, which was expected. Entirely unexpected was a high degree of parallelism for linkage disequilibrium. The evolutionary genetic changes among these sexual populations are rapid and genomically extensive. This pattern may be due to segregating functional genetic variation that is abundantly maintained genome-wide by selection, variation that responds immediately to changes of selection regime.
Data from: Evidence for parallel evolution of a gene involved in the regulation of spermatogenesis
PHD finger protein 7 (Phf7) is a male germline specific gene in Drosophila melanogaster that can trigger the male germline sexual fate and regulate spermatogenesis, and its human homologue can rescue fecundity defects in male flies lacking this gene. These findings prompted us to investigate conservation of reproductive strategies through studying the evolutionary origin of this gene. We find that Phf7 is present only in select species including mammals and some insects, whereas the closely related G2/M-phase specific E3 ubiquitin protein ligase (G2e3) is in the genome of most metazoans. Interestingly, phylogenetic analyses showed that vertebrate and insect Phf7 genes did not evolve from a common Phf7 ancestor but rather through independent duplication events from an ancestral G2e3. This is an example of parallel evolution in which a male germline factor evolved at least twice from a pre-existing template to develop new regulatory mechanisms of spermatogenesis.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.