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229
datasets available to search
ShareScore release 0.7.1
Dataset results
229 results for “plant genomics”
N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses [RNA-Seq 93-11]
GEO Series GSE108779. Oryza sativa. 2 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide binding of Arabidopsis growth regulating factors uncovers their broad regulatory functions in plant growth, development and stress response
GEO Series GSE128171. Arabidopsis thaliana. 21 samples. Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing.
Genome editing in plants using the compact editor CasΦ
GEO Series GSE206798. Zea mays; Arabidopsis thaliana. 822 samples. Type: Other.
Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes
GEO Series GSE150929. Zea mays. 6 samples. Type: Methylation profiling by high throughput sequencing.
Chloroplast redox status modulates genome-wide plant responses during drought
GEO Series GSE149503. Solanum tuberosum. 8 samples. Type: Expression profiling by array.
Genome-wide identification of mis-spliced/intron-retained transcripts in Arabidopsis thaliana rcf1-1 mutant plants under normal growth conditions as determined by tiling array analysis.
GEO Series GSE41377. Arabidopsis thaliana. 6 samples. Type: Expression profiling by genome tiling array.
N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses [SMRT sequencing 93-11]
GEO Series GSE108780. Oryza sativa. 1 samples. Type: Methylation profiling by high throughput sequencing.
Genome-wide analysis of Botrytis cinerea genes targeting plant cell walls of different hosts [tomato]
GEO Series GSE57586. Botrytis cinerea B05.10. 3 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide identification of mRNAs involved in potato response to drought exhibiting functional evolutionary conservation with Arabidopsis plants
GEO Series GSE97776. Solanum tuberosum. 36 samples. Type: Expression profiling by high throughput sequencing.
Genome sequence of the ectophytic fungus Ramichloridium luteum reveals unique evolutionary adaptations to plant surface niche
GEO Series GSE100245. Ramichloridium luteum. 6 samples. Type: Expression profiling by high throughput sequencing.
Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes
GEO Series GSE85203. Arabidopsis thaliana; Zea mays subsp. mays. 14 samples. Type: Other.
Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes
GEO Series GSE152046. Zea mays. 2 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Whole Genome Segregation of light and nitrate effect in rice plants
GEO Series GSE12940. Oryza sativa Japonica Group; Oryza sativa. 4 samples. Type: Expression profiling by array.
Assembly and annotation of Solanum dulcamara and Solanum nigrum plant genomes, two nightshades with contrasting susceptibilities to Ralstonia solanacearum
GEO Series GSE255584. Solanum nigrum. 1 samples. Type: Methylation profiling by high throughput sequencing; Other.
Comparative chemical-genomic profiling of plant-based hydrolysate toxins enables predictive assessment of responses to complex mixtures
GEO Series GSE186866. Saccharomyces cerevisiae. 151 samples. Type: Other.
N6-Methyladenine DNA Methylation in Japonica and Indica Rice Genomes and Its Association with Gene Expression, Plant Development, and Stress Responses [RNA-seq]
GEO Series GSE121269. Oryza sativa. 6 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide Analysis of Transcription Factors among Differentially Expressed Genes Induced by Adding Exogenous Nitrogen in Poplar Plants under Cadmium Stress
GEO Series GSE140398. Populus yunnanensis. 9 samples. Type: Expression profiling by high throughput sequencing.
Maternal and paternal genomes contribute equally to the transcriptome of early plant embryos
GEO Series GSE33713. Arabidopsis thaliana. 6 samples. Type: Expression profiling by high throughput sequencing.
Genome-wide DNA methylation level analysis in plants overexpressing METS1
GEO Series GSE128768. Arabidopsis thaliana. 5 samples. Type: Methylation profiling by high throughput sequencing.
Data from: A genome for gnetophytes and early evolution of seed plants
Gnetophytes are an enigmatic gymnosperm lineage comprising three genera, Gnetum, Welwitschia and Ephedra, which are morphologically distinct from all other seed plants. Their distinctiveness has triggered much debate as to their origin, evolution and phylogenetic placement among seed plants. To increase our understanding of the evolution of gnetophytes, and their relation to other seed plants, we report here a high-quality draft genome sequence for Gnetum montanum, the first for any gnetophyte. By using a novel genome assembly strategy to deal with high levels of heterozygosity, we assembled >4 Gb of sequence encoding 27,491 protein-coding genes. Comparative analysis of the G. montanum genome with other gymnosperm genomes unveiled some remarkable and distinctive genomic features, such as a diverse assemblage of retrotransposons with evidence for elevated frequencies of elimination rather than accumulation, considerable differences in intron architecture, including both length distribution and proportions of (retro) transposon elements, and distinctive patterns of proliferation of functional protein domains. Furthermore, a few gene families showed Gnetum-specific copy number expansions (for example, cellulose synthase) or contractions (for example, Late Embryogenesis Abundant protein), which could be connected with Gnetum's distinctive morphological innovations associated with their adaptation to warm, mesic environments. Overall, the G. montanum genome enables a better resolution of ancestral genomic features within seed plants, and the identification of genomic characters that distinguish Gnetum from other gymnosperms.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.